Wall clock time and date at job start Tue Mar 31 2020 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 109.46812 * 2 1 4 4 C 1.46492 * 119.99684 * 274.99700 * 3 2 1 5 5 C 1.50707 * 109.47593 * 275.00104 * 4 3 2 6 6 H 1.08000 * 119.99275 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99815 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00352 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47063 * 90.00170 * 9 7 5 11 11 H 1.48497 * 109.47327 * 210.00121 * 9 7 5 12 12 H 1.48503 * 109.47091 * 330.00681 * 9 7 5 13 13 S 1.65597 * 120.00069 * 95.00301 * 3 2 1 14 14 O 1.42099 * 106.40196 * 336.45849 * 13 3 2 15 15 O 1.42092 * 106.40069 * 203.53673 * 13 3 2 16 16 N 1.65599 * 107.22052 * 89.99540 * 13 3 2 17 17 C 1.46501 * 119.99923 * 65.00069 * 16 13 3 18 18 H 1.09000 * 109.78197 * 335.47980 * 17 16 13 19 19 C 1.50546 * 109.57957 * 96.04735 * 17 16 13 20 20 C 1.54069 * 112.41623 * 213.92514 * 19 17 16 21 21 C 1.54056 * 112.81521 * 318.27597 * 20 19 17 22 22 C 1.50476 * 112.50048 * 318.28454 * 21 20 19 23 23 H 1.09002 * 109.62685 * 334.44737 * 22 21 20 24 24 C 1.52997 * 109.78995 * 213.95638 * 22 21 20 25 25 C 1.54245 * 108.51856 * 94.15187 * 22 21 20 26 26 C 1.45542 * 112.40792 * 280.00900 * 25 22 21 27 27 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47385 * 300.00104 * 1 2 3 29 29 H 1.08993 * 109.47639 * 60.00045 * 1 2 3 30 30 H 1.08996 * 109.47101 * 239.99894 * 2 1 3 31 31 H 1.09003 * 109.47280 * 119.99542 * 2 1 3 32 32 H 1.09007 * 109.47448 * 35.00463 * 4 3 2 33 33 H 1.09001 * 109.47024 * 155.00717 * 4 3 2 34 34 H 0.96996 * 119.99931 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00357 * 245.00038 * 16 13 3 36 36 H 1.09000 * 108.92627 * 93.16958 * 19 17 16 37 37 H 1.09006 * 108.83640 * 334.61947 * 19 17 16 38 38 H 1.09000 * 108.81197 * 197.41864 * 20 19 17 39 39 H 1.08999 * 108.81384 * 79.13971 * 20 19 17 40 40 H 1.09003 * 108.87949 * 197.50496 * 21 20 19 41 41 H 1.09005 * 108.87812 * 79.06574 * 21 20 19 42 42 H 1.08994 * 109.47370 * 300.86960 * 24 22 21 43 43 H 1.08994 * 109.46980 * 60.87608 * 24 22 21 44 44 H 1.09003 * 109.46530 * 180.87104 * 24 22 21 45 45 H 1.08997 * 108.89530 * 159.25760 * 25 22 21 46 46 H 1.09002 * 108.89487 * 40.76592 * 25 22 21 47 47 H 1.09002 * 108.89596 * 182.69054 * 26 25 22 48 48 H 1.09003 * 108.89788 * 301.28088 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3839 7 6 3.8528 2.3614 -3.0844 8 7 5.0190 2.0819 -3.6243 9 14 2.6811 3.5330 -3.9468 10 1 2.9447 4.9214 -3.4909 11 1 2.8863 3.4467 -5.4150 12 1 1.2807 3.1622 -3.6200 13 16 2.4121 2.1203 1.4286 14 8 1.6869 1.4416 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0143 1.8138 1.7137 17 6 5.0350 2.3526 0.8114 18 1 4.5999 2.5339 -0.1714 19 6 5.5759 3.6404 1.3730 20 6 5.9496 4.6506 0.2714 21 6 6.6640 3.9931 -0.9247 22 6 7.6776 2.9666 -0.4968 23 1 8.0298 3.1968 0.5087 24 6 8.8593 2.9690 -1.4685 25 6 7.0032 1.5794 -0.5045 26 6 6.1981 1.3473 0.6855 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 5.2711 2.4850 -4.4698 35 1 4.2771 1.2776 2.4781 36 1 6.4634 3.4219 1.9669 37 1 4.8205 4.0871 2.0196 38 1 6.6050 5.4097 0.6983 39 1 5.0403 5.1345 -0.0849 40 1 7.1685 4.7671 -1.5031 41 1 5.9196 3.5109 -1.5585 42 1 8.5034 2.7452 -2.4741 43 1 9.3338 3.9502 -1.4610 44 1 9.5827 2.2132 -1.1625 45 1 7.7750 0.8120 -0.5636 46 1 6.3637 1.5027 -1.3839 47 1 5.7892 0.3377 0.6437 48 1 6.8357 1.4332 1.5654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337159975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:26 Heat of formation + Delta-G solvation = -118.572311 kcal Electronic energy + Delta-G solvation = -28341.212486 eV Core-core repulsion = 24749.169125 eV Total energy + Delta-G solvation = -3592.043361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20824 -38.25810 -37.70556 -36.85515 -36.03631 -34.54299 -33.31142 -31.86876 -31.75226 -28.83107 -27.89591 -24.98052 -24.50037 -23.84180 -23.16179 -21.49318 -20.24341 -19.94768 -18.95146 -18.49449 -18.23799 -17.43336 -16.75073 -16.06905 -15.86575 -15.56736 -15.41267 -15.01251 -14.80957 -14.51746 -14.39867 -14.10007 -14.05193 -13.71792 -13.66893 -13.61418 -13.31276 -13.15146 -13.03555 -12.95611 -12.76241 -12.71549 -12.57126 -12.28418 -12.18996 -12.09096 -11.85834 -11.74786 -11.56105 -11.45221 -11.23505 -11.06521 -11.00490 -10.75500 -10.51508 -10.24505 -9.71791 -8.11826 -6.11394 -0.23620 1.38602 1.45719 1.49219 2.03208 2.43095 2.65095 3.19339 3.47797 3.86058 3.89499 3.96903 4.08434 4.32053 4.38843 4.41406 4.42913 4.46523 4.53120 4.61572 4.70014 4.71502 4.81739 4.90915 4.99470 5.01780 5.06212 5.07679 5.08552 5.10706 5.23705 5.28433 5.37462 5.39739 5.44550 5.47642 5.53655 5.56447 5.60107 5.66075 5.66790 5.81679 5.89122 6.02218 6.34656 6.46471 6.89422 7.48520 8.97443 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.007758 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.567962 B = 3608.124827 C = 4921.944363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.991 5.991 4 C 0.216 3.784 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.256 1.256 13 S 2.796 3.204 14 O -1.009 7.009 15 O -1.013 7.013 16 N -1.111 6.111 17 C 0.127 3.873 18 H 0.114 0.886 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.074 4.074 23 H 0.078 0.922 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.099 4.099 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -2.083 7.616 8.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.831 5.831 4 C 0.092 3.908 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.149 4.149 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.180 1.180 13 S 2.804 3.196 14 O -0.993 6.993 15 O -0.997 6.997 16 N -0.872 5.872 17 C 0.021 3.979 18 H 0.131 0.869 19 C -0.166 4.166 20 C -0.148 4.148 21 C -0.164 4.164 22 C -0.093 4.093 23 H 0.096 0.904 24 C -0.195 4.195 25 C -0.161 4.161 26 C -0.138 4.138 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.546 -1.434 7.845 8.372 hybrid contribution -0.275 0.345 -0.888 0.991 sum 2.271 -1.089 6.957 7.399 Atomic orbital electron populations 1.22204 0.95694 1.03312 1.01521 1.21249 0.94655 0.81130 1.03349 1.57458 1.79457 1.24031 1.22182 1.19393 0.97519 0.91635 0.82285 1.21534 1.01332 1.28375 1.05976 0.90341 1.25143 0.95585 0.96786 0.97372 1.69906 1.20797 1.44015 1.18849 0.86580 0.82066 0.81064 0.78482 1.20588 1.21210 1.18045 1.01265 0.73142 0.72946 0.72248 1.93526 1.71531 1.76180 1.58064 1.93524 1.86818 1.33229 1.86082 1.55740 1.24213 1.68458 1.38766 1.21142 0.89428 0.92991 0.94376 0.86900 1.21834 1.01183 0.95383 0.98174 1.21801 0.99367 0.97903 0.95742 1.21510 0.98822 0.98354 0.97683 1.20747 0.94683 0.94355 0.99479 0.90391 1.21803 0.97261 1.01592 0.98884 1.20560 0.99157 0.96832 0.99528 1.20550 0.95785 0.98303 0.99186 0.89197 0.93484 0.92818 0.89922 0.90013 0.94313 0.95573 0.92809 0.74702 0.90043 0.92777 0.90793 0.94609 0.93174 0.91934 0.94408 0.92278 0.91907 0.92223 0.91503 0.92311 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 10.24 71.98 0.74 -4.01 16 2 C 0.12 3.86 6.06 86.38 0.52 4.38 16 3 N -0.99 -37.88 2.82 -519.83 -1.47 -39.35 16 4 C 0.22 9.52 4.38 85.64 0.38 9.89 16 5 C -0.53 -25.40 7.46 25.60 0.19 -25.20 16 6 H 0.08 3.91 6.54 -2.91 -0.02 3.89 16 7 C 0.05 2.66 5.11 84.65 0.43 3.09 16 8 N -0.90 -46.21 13.31 21.45 0.29 -45.92 16 9 Si 0.89 40.32 27.47 68.60 1.88 42.20 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.26 -11.12 6.54 99.48 0.65 -10.47 16 13 S 2.80 106.56 6.01 -56.49 -0.34 106.22 16 14 O -1.01 -39.20 17.11 -128.00 -2.19 -41.39 16 15 O -1.01 -45.30 16.39 -128.00 -2.10 -47.40 16 16 N -1.11 -35.68 5.39 -170.95 -0.92 -36.60 16 17 C 0.13 4.36 2.05 44.62 0.09 4.45 16 18 H 0.11 4.72 3.13 -2.39 -0.01 4.71 16 19 C -0.13 -4.03 5.05 30.16 0.15 -3.87 16 20 C -0.11 -3.66 5.85 31.31 0.18 -3.48 16 21 C -0.13 -4.44 4.89 30.13 0.15 -4.29 16 22 C -0.07 -2.23 2.39 -11.19 -0.03 -2.26 16 23 H 0.08 2.03 6.98 -2.39 -0.02 2.02 16 24 C -0.14 -3.82 8.88 71.98 0.64 -3.18 16 25 C -0.12 -4.05 4.68 28.74 0.13 -3.91 16 26 C -0.10 -2.99 4.83 28.74 0.14 -2.85 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 31 H 0.08 2.32 7.61 -2.39 -0.02 2.30 16 32 H 0.04 1.68 7.17 -2.38 -0.02 1.66 16 33 H 0.03 1.24 6.34 -2.39 -0.02 1.22 16 34 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 35 H 0.42 10.72 8.85 -96.75 -0.86 9.87 16 36 H 0.08 2.12 6.63 -2.39 -0.02 2.10 16 37 H 0.05 1.80 7.88 -2.38 -0.02 1.78 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.68 7.69 -2.39 -0.02 1.66 16 41 H 0.06 2.72 5.93 -2.38 -0.01 2.71 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.45 8.11 -2.39 -0.02 1.43 16 44 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 45 H 0.06 1.78 7.96 -2.39 -0.02 1.77 16 46 H 0.07 2.82 6.50 -2.39 -0.02 2.80 16 47 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 48 H 0.07 1.84 7.46 -2.39 -0.02 1.83 16 Total: -1.00 -57.81 367.44 -1.10 -58.91 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.03 Total: 34.56 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.72 Total: -31.24 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -2.10 Total: -121.87 kcal Atomic # 8 Polarization: -84.50 SS G_CDS: -4.29 Total: -88.79 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.20 kcal Atomic # 16 Polarization: 106.56 SS G_CDS: -0.34 Total: 106.22 kcal Total: -57.81 -1.10 -58.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337159975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.663 kcal (2) G-P(sol) polarization free energy of solvation -57.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds