Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46816 * 2 1 4 4 C 1.46498 * 120.00055 * 276.79109 * 3 2 1 5 5 C 1.50703 * 109.47507 * 275.00052 * 4 3 2 6 6 H 1.07999 * 119.99284 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00551 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99736 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47302 * 119.99986 * 9 7 5 12 12 H 1.48499 * 109.47372 * 240.00119 * 9 7 5 13 13 S 1.65597 * 120.00229 * 96.79237 * 3 2 1 14 14 O 1.42095 * 106.40724 * 161.68804 * 13 3 2 15 15 O 1.42108 * 106.39895 * 28.77155 * 13 3 2 16 16 N 1.65600 * 107.22029 * 275.23488 * 13 3 2 17 17 C 1.46497 * 120.00140 * 93.15508 * 16 13 3 18 18 C 1.53002 * 109.46984 * 91.02456 * 17 16 13 19 19 C 1.53775 * 113.61728 * 89.64618 * 18 17 16 20 20 C 1.54049 * 86.98881 * 140.01824 * 19 18 17 21 21 C 1.53778 * 113.61444 * 187.25378 * 18 17 16 22 22 C 1.46500 * 119.99510 * 273.15734 * 16 13 3 23 23 C 1.53002 * 109.47088 * 119.11153 * 22 16 13 24 24 C 1.53007 * 109.46981 * 239.10928 * 22 16 13 25 25 H 1.09007 * 109.46639 * 185.44584 * 1 2 3 26 26 H 1.08995 * 109.47225 * 305.44246 * 1 2 3 27 27 H 1.09002 * 109.47041 * 65.44723 * 1 2 3 28 28 H 1.09000 * 109.46807 * 240.00307 * 2 1 3 29 29 H 1.08995 * 109.47022 * 120.00165 * 2 1 3 30 30 H 1.09001 * 109.47156 * 35.00548 * 4 3 2 31 31 H 1.09005 * 109.47133 * 154.99980 * 4 3 2 32 32 H 0.97002 * 120.00375 * 179.97438 * 8 7 5 33 33 H 1.08991 * 109.47459 * 331.02176 * 17 16 13 34 34 H 1.09004 * 109.47092 * 211.01620 * 17 16 13 35 35 H 1.09005 * 112.84846 * 318.44608 * 18 17 16 36 36 H 1.09010 * 113.61474 * 254.61172 * 19 18 17 37 37 H 1.09001 * 113.61778 * 25.51651 * 19 18 17 38 38 H 1.08993 * 113.62322 * 220.01982 * 20 19 18 39 39 H 1.09003 * 113.61311 * 89.11418 * 20 19 18 40 40 H 1.09005 * 113.61465 * 334.48490 * 21 18 17 41 41 H 1.09001 * 113.61743 * 105.29769 * 21 18 17 42 42 H 1.08994 * 109.47487 * 359.11026 * 22 16 13 43 43 H 1.08994 * 109.47060 * 59.99611 * 23 22 16 44 44 H 1.09005 * 109.46965 * 179.97438 * 23 22 16 45 45 H 1.08999 * 109.47064 * 299.99499 * 23 22 16 46 46 H 1.08992 * 109.47037 * 42.56925 * 24 22 16 47 47 H 1.09002 * 109.47011 * 162.57176 * 24 22 16 48 48 H 1.08999 * 109.47012 * 282.56440 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1210 2.1218 -1.2598 5 6 3.4387 1.8087 -1.9207 6 1 4.1302 1.1260 -1.4496 7 6 3.7608 2.3931 -3.1272 8 7 2.9185 3.2241 -3.7012 9 14 5.3938 2.0044 -3.9467 10 1 6.1552 1.0475 -3.1041 11 1 5.1469 1.4005 -5.2808 12 1 6.1774 3.2556 -4.1071 13 16 2.4542 2.1054 1.4240 14 8 3.2621 3.2213 1.0760 15 8 2.8958 1.0644 2.2847 16 7 1.0749 2.7204 2.1036 17 6 0.3166 1.9233 3.0708 18 6 0.8157 2.2270 4.4849 19 6 0.0751 3.3918 5.1627 20 6 0.1212 2.5601 6.4586 21 6 0.2076 1.3136 5.5622 22 6 0.6132 4.0616 1.7373 23 6 -0.7766 3.9674 1.1043 24 6 0.5447 4.9372 2.9902 25 1 -0.3633 -1.0231 0.0975 26 1 -0.3633 0.5959 0.8372 27 1 -0.3633 0.4270 -0.9348 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3046 1.8299 -1.9205 31 1 2.0606 3.1914 -1.0585 32 1 3.1453 3.6355 -4.5498 33 1 0.4550 0.8636 2.8564 34 1 -0.7418 2.1736 2.9976 35 1 1.9013 2.3073 4.5424 36 1 0.6588 4.3112 5.2112 37 1 -0.9336 3.5493 4.7807 38 1 -0.7962 2.6137 7.0448 39 1 1.0168 2.7315 7.0557 40 1 -0.7649 0.9038 5.2892 41 1 0.8977 0.5552 5.9321 42 1 1.3085 4.5029 1.0233 43 1 -1.4718 3.5261 1.8184 44 1 -1.1203 4.9654 0.8323 45 1 -0.7277 3.3437 0.2118 46 1 1.4276 4.7618 3.6047 47 1 0.5076 5.9868 2.6984 48 1 -0.3502 4.6867 3.5600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337160659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -58.629935 kcal Electronic energy + Delta-G solvation = -27652.020919 eV Core-core repulsion = 24062.576855 eV Total energy + Delta-G solvation = -3589.444064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.41310 -36.80000 -36.43324 -35.96888 -35.08786 -32.65406 -31.69174 -29.93653 -27.76860 -27.37760 -26.55986 -25.37192 -23.11778 -22.90587 -21.71976 -20.71733 -19.60235 -18.22659 -17.41593 -16.71419 -16.28631 -15.83586 -15.47909 -15.04250 -14.92951 -14.29451 -14.07307 -13.73606 -13.52782 -13.36937 -13.02646 -12.93009 -12.64863 -12.42839 -12.20526 -12.07808 -11.99328 -11.87498 -11.66348 -11.44873 -11.35410 -11.31232 -11.15531 -11.00657 -10.91517 -10.85029 -10.71602 -10.56881 -10.45943 -10.33583 -10.24011 -10.06740 -9.96027 -9.71597 -8.75422 -8.42217 -8.01492 -6.04809 -4.08454 1.25830 3.31704 3.39391 3.44532 3.50976 4.11576 4.46026 4.55291 4.62121 4.69618 4.78614 4.96661 5.01325 5.22934 5.28984 5.31839 5.39842 5.44857 5.48177 5.58118 5.62013 5.67533 5.70754 5.74079 5.75259 5.81537 5.84247 5.86291 5.89821 5.98157 6.02568 6.07943 6.17502 6.24443 6.30930 6.42769 6.46911 6.53922 6.62792 6.66277 6.95680 7.29022 7.46275 7.67743 7.93232 8.23625 8.94318 9.56761 11.03688 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.004425 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.413412 B = 6326.387094 C = 6528.453882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.775 3.225 14 O -0.966 6.966 15 O -0.995 6.995 16 N -1.004 6.004 17 C 0.137 3.863 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.134 4.134 22 C 0.142 3.858 23 C -0.160 4.160 24 C -0.167 4.167 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -1.061 15.289 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.785 3.215 14 O -0.949 6.949 15 O -0.979 6.979 16 N -0.841 5.841 17 C 0.011 3.989 18 C -0.146 4.146 19 C -0.174 4.174 20 C -0.185 4.185 21 C -0.172 4.172 22 C 0.036 3.964 23 C -0.218 4.218 24 C -0.225 4.225 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.315 -0.887 15.462 18.608 hybrid contribution 0.491 -0.163 -0.813 0.963 sum -9.824 -1.050 14.649 17.669 Atomic orbital electron populations 1.22276 0.97258 1.01105 1.02333 1.21111 0.93058 0.83394 1.03295 1.57777 1.80827 1.21199 1.23465 1.19008 0.97353 0.90965 0.79035 1.21546 1.02934 1.27085 1.05225 0.92244 1.24913 0.97178 0.94840 0.97011 1.69924 1.35774 1.29838 1.17885 0.86491 0.83823 0.78345 0.79091 1.19655 1.20970 1.20803 1.02166 0.73436 0.73222 0.72663 1.93606 1.64972 1.52736 1.83621 1.93515 1.79754 1.58033 1.66610 1.58375 1.46070 1.24375 1.55269 1.21164 0.96196 0.94732 0.86841 1.23023 1.00666 0.96759 0.94102 1.23394 1.00521 0.97702 0.95804 1.22904 1.01640 0.97246 0.96663 1.22870 1.01082 0.96667 0.96630 1.20813 0.96888 0.81793 0.96924 1.22157 0.96335 1.02219 1.01133 1.22649 1.02607 0.99209 0.98071 0.92444 0.93073 0.92027 0.89930 0.90883 0.94820 0.94439 0.92799 0.90497 0.90489 0.88991 0.90876 0.89969 0.91830 0.90474 0.90166 0.91411 0.88293 0.92654 0.91842 0.91733 0.91907 0.92288 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.23 37.16 0.38 -1.99 16 2 C 0.12 2.05 6.41 -4.04 -0.03 2.03 16 3 N -0.99 -20.58 2.83 -115.66 -0.33 -20.91 16 4 C 0.26 6.44 5.12 -5.19 -0.03 6.42 16 5 C -0.53 -14.91 9.38 -34.44 -0.32 -15.23 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 S 2.78 56.12 6.02 -107.50 -0.65 55.48 16 14 O -0.97 -23.44 15.59 -57.17 -0.89 -24.33 16 15 O -1.00 -20.95 15.74 -57.17 -0.90 -21.85 16 16 N -1.00 -15.15 2.77 -107.30 -0.30 -15.45 16 17 C 0.14 1.67 4.09 -4.04 -0.02 1.65 16 18 C -0.13 -1.45 3.46 -89.81 -0.31 -1.76 16 19 C -0.14 -1.29 4.83 -25.78 -0.12 -1.41 16 20 C -0.15 -1.28 8.09 -25.78 -0.21 -1.49 16 21 C -0.13 -1.29 7.64 -25.92 -0.20 -1.49 16 22 C 0.14 1.99 3.23 -67.93 -0.22 1.77 16 23 C -0.16 -1.90 9.11 37.16 0.34 -1.56 16 24 C -0.17 -1.91 7.14 37.16 0.27 -1.64 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.65 6.79 -51.93 -0.35 0.30 16 27 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 29 H 0.07 1.21 6.97 -51.93 -0.36 0.85 16 30 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.04 1.00 7.46 -51.93 -0.39 0.61 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 34 H 0.08 0.77 6.14 -51.93 -0.32 0.45 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.70 6.11 -51.92 -0.32 0.38 16 37 H 0.08 0.69 6.84 -51.93 -0.35 0.33 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.66 6.98 -51.93 -0.36 1.30 16 43 H 0.05 0.56 6.69 -51.93 -0.35 0.21 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.65 4.95 -51.93 -0.26 0.39 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -32.47 377.59 -10.61 -43.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.38 Total: -0.29 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.57 Total: -13.03 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.11 Total: -61.68 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.79 Total: -46.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.65 Total: 55.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.47 -10.61 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337160659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.555 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds