Wall clock time and date at job start Tue Mar 31 2020 12:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46816 * 2 1 4 4 C 1.46498 * 120.00055 * 276.79109 * 3 2 1 5 5 C 1.50703 * 109.47507 * 275.00052 * 4 3 2 6 6 H 1.07999 * 119.99284 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00551 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99736 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47302 * 119.99986 * 9 7 5 12 12 H 1.48499 * 109.47372 * 240.00119 * 9 7 5 13 13 S 1.65597 * 120.00229 * 96.79237 * 3 2 1 14 14 O 1.42095 * 106.40724 * 161.68804 * 13 3 2 15 15 O 1.42108 * 106.39895 * 28.77155 * 13 3 2 16 16 N 1.65600 * 107.22029 * 275.23488 * 13 3 2 17 17 C 1.46497 * 120.00140 * 93.15508 * 16 13 3 18 18 C 1.53002 * 109.46984 * 91.02456 * 17 16 13 19 19 C 1.53775 * 113.61728 * 89.64618 * 18 17 16 20 20 C 1.54049 * 86.98881 * 140.01824 * 19 18 17 21 21 C 1.53778 * 113.61444 * 187.25378 * 18 17 16 22 22 C 1.46500 * 119.99510 * 273.15734 * 16 13 3 23 23 C 1.53002 * 109.47088 * 119.11153 * 22 16 13 24 24 C 1.53007 * 109.46981 * 239.10928 * 22 16 13 25 25 H 1.09007 * 109.46639 * 185.44584 * 1 2 3 26 26 H 1.08995 * 109.47225 * 305.44246 * 1 2 3 27 27 H 1.09002 * 109.47041 * 65.44723 * 1 2 3 28 28 H 1.09000 * 109.46807 * 240.00307 * 2 1 3 29 29 H 1.08995 * 109.47022 * 120.00165 * 2 1 3 30 30 H 1.09001 * 109.47156 * 35.00548 * 4 3 2 31 31 H 1.09005 * 109.47133 * 154.99980 * 4 3 2 32 32 H 0.97002 * 120.00375 * 179.97438 * 8 7 5 33 33 H 1.08991 * 109.47459 * 331.02176 * 17 16 13 34 34 H 1.09004 * 109.47092 * 211.01620 * 17 16 13 35 35 H 1.09005 * 112.84846 * 318.44608 * 18 17 16 36 36 H 1.09010 * 113.61474 * 254.61172 * 19 18 17 37 37 H 1.09001 * 113.61778 * 25.51651 * 19 18 17 38 38 H 1.08993 * 113.62322 * 220.01982 * 20 19 18 39 39 H 1.09003 * 113.61311 * 89.11418 * 20 19 18 40 40 H 1.09005 * 113.61465 * 334.48490 * 21 18 17 41 41 H 1.09001 * 113.61743 * 105.29769 * 21 18 17 42 42 H 1.08994 * 109.47487 * 359.11026 * 22 16 13 43 43 H 1.08994 * 109.47060 * 59.99611 * 23 22 16 44 44 H 1.09005 * 109.46965 * 179.97438 * 23 22 16 45 45 H 1.08999 * 109.47064 * 299.99499 * 23 22 16 46 46 H 1.08992 * 109.47037 * 42.56925 * 24 22 16 47 47 H 1.09002 * 109.47011 * 162.57176 * 24 22 16 48 48 H 1.08999 * 109.47012 * 282.56440 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1210 2.1218 -1.2598 5 6 3.4387 1.8087 -1.9207 6 1 4.1302 1.1260 -1.4496 7 6 3.7608 2.3931 -3.1272 8 7 2.9185 3.2241 -3.7012 9 14 5.3938 2.0044 -3.9467 10 1 6.1552 1.0475 -3.1041 11 1 5.1469 1.4005 -5.2808 12 1 6.1774 3.2556 -4.1071 13 16 2.4542 2.1054 1.4240 14 8 3.2621 3.2213 1.0760 15 8 2.8958 1.0644 2.2847 16 7 1.0749 2.7204 2.1036 17 6 0.3166 1.9233 3.0708 18 6 0.8157 2.2270 4.4849 19 6 0.0751 3.3918 5.1627 20 6 0.1212 2.5601 6.4586 21 6 0.2076 1.3136 5.5622 22 6 0.6132 4.0616 1.7373 23 6 -0.7766 3.9674 1.1043 24 6 0.5447 4.9372 2.9902 25 1 -0.3633 -1.0231 0.0975 26 1 -0.3633 0.5959 0.8372 27 1 -0.3633 0.4270 -0.9348 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3046 1.8299 -1.9205 31 1 2.0606 3.1914 -1.0585 32 1 3.1453 3.6355 -4.5498 33 1 0.4550 0.8636 2.8564 34 1 -0.7418 2.1736 2.9976 35 1 1.9013 2.3073 4.5424 36 1 0.6588 4.3112 5.2112 37 1 -0.9336 3.5493 4.7807 38 1 -0.7962 2.6137 7.0448 39 1 1.0168 2.7315 7.0557 40 1 -0.7649 0.9038 5.2892 41 1 0.8977 0.5552 5.9321 42 1 1.3085 4.5029 1.0233 43 1 -1.4718 3.5261 1.8184 44 1 -1.1203 4.9654 0.8323 45 1 -0.7277 3.3437 0.2118 46 1 1.4276 4.7618 3.6047 47 1 0.5076 5.9868 2.6984 48 1 -0.3502 4.6867 3.5600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337160659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:52 Heat of formation + Delta-G solvation = -79.372183 kcal Electronic energy + Delta-G solvation = -27652.920371 eV Core-core repulsion = 24062.576855 eV Total energy + Delta-G solvation = -3590.343516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29449 -38.39239 -37.72618 -37.49491 -36.83074 -34.73321 -32.76615 -31.50200 -28.77445 -28.46490 -28.30452 -26.14361 -24.96066 -23.80760 -23.27612 -21.90945 -20.44049 -19.64918 -18.99204 -18.34135 -18.31544 -17.30462 -16.66967 -16.32743 -16.03391 -15.78771 -15.28653 -15.19569 -14.83555 -14.71467 -14.43821 -14.06190 -13.83183 -13.70178 -13.56249 -13.38977 -13.18415 -13.16417 -13.05415 -12.97849 -12.85992 -12.75534 -12.69895 -12.54053 -12.25029 -12.20009 -12.10185 -11.89357 -11.74043 -11.66652 -11.61797 -11.44217 -11.09367 -10.86392 -10.61280 -9.92829 -9.73353 -8.21969 -6.33968 -0.32683 1.35563 1.38063 1.49668 2.04678 2.37795 2.58656 3.08499 3.38249 3.66970 3.80621 3.89681 3.95118 4.01871 4.07939 4.21822 4.26542 4.40957 4.45888 4.49076 4.55453 4.66649 4.73057 4.79646 4.85974 4.87151 4.95740 4.96466 5.01524 5.02442 5.09700 5.14855 5.17239 5.18850 5.24392 5.26593 5.41704 5.43451 5.46054 5.49824 5.54389 5.68130 5.71277 5.81079 6.03528 6.11263 6.74410 7.34858 8.85509 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.004425 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.413412 B = 6326.387094 C = 6528.453882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.998 5.998 4 C 0.279 3.721 5 C -0.552 4.552 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.267 1.267 12 H -0.278 1.278 13 S 2.783 3.217 14 O -1.015 7.015 15 O -1.009 7.009 16 N -0.990 5.990 17 C 0.130 3.870 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.130 4.130 22 C 0.134 3.866 23 C -0.153 4.153 24 C -0.160 4.160 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.013 0.987 32 H 0.268 0.732 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -1.473 16.586 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.838 5.838 4 C 0.155 3.845 5 C -0.592 4.592 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.204 1.204 13 S 2.794 3.206 14 O -0.999 6.999 15 O -0.993 6.993 16 N -0.831 5.831 17 C 0.005 3.995 18 C -0.159 4.159 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.029 3.971 23 C -0.212 4.212 24 C -0.219 4.219 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.586 -1.328 16.765 21.006 hybrid contribution 1.179 -0.042 -1.142 1.642 sum -11.408 -1.370 15.623 19.393 Atomic orbital electron populations 1.22186 0.94111 1.03296 1.02329 1.21357 0.95733 0.81494 1.03063 1.57681 1.81466 1.22493 1.22185 1.18493 0.95699 0.89985 0.80326 1.21870 1.04171 1.27187 1.05922 0.93474 1.25706 1.00548 0.94652 0.97594 1.70005 1.37328 1.30375 1.18348 0.85576 0.79709 0.78237 0.78616 1.19662 1.19221 1.20389 1.01629 0.74183 0.72343 0.72452 1.93533 1.67546 1.54444 1.84399 1.93481 1.80723 1.58460 1.66589 1.57964 1.45012 1.24952 1.55155 1.21522 0.97499 0.94212 0.86232 1.23026 0.99200 0.99396 0.94313 1.23411 1.01037 0.96735 0.95659 1.22871 1.02328 0.96252 0.96466 1.22912 1.01605 0.96589 0.95716 1.20981 0.97215 0.81205 0.97741 1.22118 0.95200 1.03043 1.00815 1.22634 1.03378 0.99192 0.96674 0.89339 0.91631 0.93186 0.91248 0.90025 0.95489 0.96873 0.92344 0.90735 0.87024 0.92247 0.91260 0.87823 0.89937 0.91085 0.88106 0.92304 0.92152 0.89702 0.90403 0.93725 0.93178 0.91223 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.23 71.98 0.74 -3.48 16 2 C 0.11 3.81 6.41 86.38 0.55 4.36 16 3 N -1.00 -42.81 2.83 -519.84 -1.47 -44.28 16 4 C 0.28 14.52 5.12 85.63 0.44 14.96 16 5 C -0.55 -32.28 9.38 25.60 0.24 -32.04 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.85 5.46 84.65 0.46 1.31 16 8 N -0.92 -54.66 13.29 21.45 0.28 -54.38 16 9 Si 0.95 45.59 29.54 68.60 2.03 47.62 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 S 2.78 116.76 6.02 -56.49 -0.34 116.42 16 14 O -1.02 -52.29 15.59 -128.00 -2.00 -54.29 16 15 O -1.01 -43.59 15.74 -128.00 -2.02 -45.60 16 16 N -0.99 -29.65 2.77 -493.39 -1.37 -31.01 16 17 C 0.13 2.90 4.09 86.38 0.35 3.25 16 18 C -0.14 -2.99 3.46 -10.27 -0.04 -3.03 16 19 C -0.13 -2.06 4.83 31.21 0.15 -1.91 16 20 C -0.14 -2.07 8.09 31.21 0.25 -1.82 16 21 C -0.13 -2.16 7.64 31.12 0.24 -1.93 16 22 C 0.13 3.71 3.23 44.99 0.15 3.86 16 23 C -0.15 -3.34 9.11 71.98 0.66 -2.68 16 24 C -0.16 -3.40 7.14 71.98 0.51 -2.88 16 25 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.06 1.52 6.79 -2.39 -0.02 1.50 16 27 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 28 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 29 H 0.08 2.69 6.97 -2.39 -0.02 2.67 16 30 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.01 0.75 7.46 -2.38 -0.02 0.73 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.07 1.72 7.11 -2.39 -0.02 1.70 16 34 H 0.11 1.74 6.14 -2.38 -0.01 1.73 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.16 6.11 -2.38 -0.01 1.15 16 37 H 0.10 1.21 6.84 -2.39 -0.02 1.19 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.28 8.10 -2.38 -0.02 1.26 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 2.15 6.98 -2.39 -0.02 2.13 16 43 H 0.08 1.34 6.69 -2.39 -0.02 1.32 16 44 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.20 6.58 -2.39 -0.02 1.18 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.10 1.48 4.95 -2.39 -0.01 1.47 16 Total: -1.00 -73.47 377.59 0.75 -72.72 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.92 Total: 14.82 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.71 Total: -22.02 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -2.55 Total: -129.67 kcal Atomic # 8 Polarization: -95.88 SS G_CDS: -4.01 Total: -99.89 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 116.76 SS G_CDS: -0.34 Total: 116.42 kcal Total: -73.47 0.75 -72.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337160659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.654 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds