Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.46677 * 2 1 4 4 C 1.46495 * 120.00038 * 274.99796 * 3 2 1 5 5 C 1.50709 * 109.47282 * 275.00133 * 4 3 2 6 6 H 1.08000 * 119.99508 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00367 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47122 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47413 * 119.99780 * 9 7 5 12 12 H 1.48502 * 109.47352 * 239.99916 * 9 7 5 13 13 S 1.65607 * 120.00121 * 95.00121 * 3 2 1 14 14 O 1.42101 * 106.40144 * 336.45750 * 13 3 2 15 15 O 1.42093 * 106.40011 * 203.53711 * 13 3 2 16 16 N 1.65598 * 107.21895 * 89.99427 * 13 3 2 17 17 C 1.46492 * 120.00548 * 270.00244 * 16 13 3 18 18 C 1.46508 * 119.99851 * 89.99923 * 16 13 3 19 19 H 1.08999 * 110.43187 * 358.91903 * 18 16 13 20 20 C 1.54888 * 110.48145 * 121.45046 * 18 16 13 21 21 C 1.54895 * 102.74386 * 156.62633 * 20 18 16 22 22 C 1.54266 * 104.19648 * 322.05753 * 21 20 18 23 23 C 1.52997 * 110.03475 * 142.89659 * 22 21 20 24 24 C 1.53003 * 110.03482 * 264.28219 * 22 21 20 25 25 C 1.53879 * 106.59869 * 23.61031 * 22 21 20 26 26 H 1.09008 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47560 * 299.99597 * 1 2 3 28 28 H 1.09001 * 109.47565 * 60.00228 * 1 2 3 29 29 H 1.08993 * 109.47565 * 240.00233 * 2 1 3 30 30 H 1.09007 * 109.47287 * 119.99422 * 2 1 3 31 31 H 1.08998 * 109.47302 * 35.00195 * 4 3 2 32 32 H 1.09000 * 109.47595 * 155.00309 * 4 3 2 33 33 H 0.96994 * 120.00692 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47185 * 270.00270 * 17 16 13 35 35 H 1.09002 * 109.47394 * 29.99776 * 17 16 13 36 36 H 1.08993 * 109.47690 * 149.99807 * 17 16 13 37 37 H 1.08998 * 110.75908 * 38.31694 * 20 18 16 38 38 H 1.08996 * 110.76227 * 274.93417 * 20 18 16 39 39 H 1.09001 * 110.48689 * 203.38469 * 21 20 18 40 40 H 1.08993 * 110.48739 * 80.73765 * 21 20 18 41 41 H 1.09002 * 109.47153 * 61.45394 * 23 22 21 42 42 H 1.09001 * 109.46832 * 301.45585 * 23 22 21 43 43 H 1.09004 * 109.47261 * 181.45567 * 23 22 21 44 44 H 1.09005 * 109.46611 * 297.90786 * 24 22 21 45 45 H 1.08997 * 109.47305 * 57.90303 * 24 22 21 46 46 H 1.08995 * 109.47700 * 177.90665 * 24 22 21 47 47 H 1.08998 * 110.03211 * 119.28035 * 25 22 21 48 48 H 1.08999 * 110.03590 * 240.71757 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1719 1.1112 -1.3839 7 6 3.8529 2.3615 -3.0843 8 7 3.0279 3.1864 -3.6915 9 14 5.5092 1.9646 -3.8512 10 1 6.2453 1.0167 -2.9765 11 1 5.3017 1.3479 -5.1860 12 1 6.2979 3.2140 -4.0003 13 16 2.4120 2.1203 1.4287 14 8 1.6867 1.4416 2.4449 15 8 2.3055 3.5187 1.1998 16 7 4.0142 1.8139 1.7138 17 6 4.4089 0.6240 2.4718 18 6 5.0371 2.7327 1.2079 19 1 4.5745 3.5492 0.6535 20 6 5.8931 3.2860 2.3741 21 6 7.2103 3.6930 1.6680 22 6 7.4306 2.5893 0.6129 23 6 8.0172 3.1944 -0.6641 24 6 8.3722 1.5170 1.1648 25 6 6.0488 1.9787 0.3204 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3616 1.8098 -1.9453 32 1 2.0920 3.1803 -1.0756 33 1 3.2797 3.5889 -4.5372 34 1 4.4545 0.8680 3.5332 35 1 3.6771 -0.1678 2.3122 36 1 5.3887 0.2865 2.1342 37 1 6.0775 2.5120 3.1191 38 1 5.4139 4.1537 2.8273 39 1 8.0354 3.7100 2.3800 40 1 7.1006 4.6646 1.1864 41 1 8.9842 3.6455 -0.4414 42 1 7.3403 3.9573 -1.0487 43 1 8.1449 2.4115 -1.4117 44 1 9.3435 1.9625 1.3804 45 1 7.9521 1.1009 2.0804 46 1 8.4921 0.7238 0.4269 47 1 5.7960 2.1135 -0.7313 48 1 6.0483 0.9181 0.5719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337161624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -94.811915 kcal Electronic energy + Delta-G solvation = -28091.059276 eV Core-core repulsion = 24500.046243 eV Total energy + Delta-G solvation = -3591.013033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.15299 -36.66810 -35.98792 -35.21572 -35.09616 -32.71488 -30.95227 -29.92463 -28.18875 -27.13415 -26.58059 -26.00928 -23.74510 -23.10947 -21.65414 -20.16547 -18.52258 -18.29154 -17.22356 -16.85750 -16.28568 -15.94410 -15.02161 -14.95041 -14.44500 -13.99215 -13.73869 -13.71801 -13.41124 -13.29940 -13.01280 -12.92121 -12.70198 -12.25765 -12.04579 -11.96952 -11.94465 -11.84658 -11.66521 -11.44018 -11.31578 -11.25850 -11.15268 -11.05905 -10.93580 -10.80896 -10.56623 -10.46916 -10.34554 -10.23099 -10.20206 -10.12539 -9.88530 -9.64779 -8.59121 -8.46950 -8.00291 -6.10935 -4.16170 1.30681 3.21237 3.30407 3.31401 3.50932 4.15129 4.34831 4.77035 4.84239 4.91940 5.03998 5.21734 5.23435 5.42303 5.46560 5.55252 5.56327 5.69816 5.72904 5.76035 5.77937 5.81510 5.85879 5.87480 5.95178 5.97006 6.06730 6.09309 6.11531 6.12951 6.24300 6.30269 6.34108 6.38233 6.48268 6.61390 6.67005 6.69496 6.83029 6.90549 7.06318 7.38536 7.47848 7.68750 7.87187 8.17488 8.89051 9.48780 10.97298 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.008264 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.925890 B = 3387.210463 C = 5212.092287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.534 4.534 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.281 1.281 13 S 2.783 3.217 14 O -0.999 6.999 15 O -0.979 6.979 16 N -1.000 6.000 17 C 0.098 3.902 18 C 0.155 3.845 19 H 0.109 0.891 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.070 4.070 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.093 0.907 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -4.426 9.440 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.573 4.573 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.708 3.292 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.207 1.207 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.963 6.963 16 N -0.837 5.837 17 C -0.048 4.048 18 C 0.049 3.951 19 H 0.127 0.873 20 C -0.173 4.173 21 C -0.150 4.150 22 C -0.071 4.071 23 C -0.199 4.199 24 C -0.191 4.191 25 C -0.170 4.170 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.342 -3.817 9.829 12.304 hybrid contribution 1.210 -0.500 -0.955 1.620 sum 7.551 -4.317 8.873 12.426 Atomic orbital electron populations 1.22207 0.97006 1.01327 1.02365 1.20963 0.93605 0.83041 1.01925 1.57783 1.78462 1.22800 1.24260 1.19191 0.97375 0.92176 0.79040 1.21648 1.02142 1.27695 1.05814 0.91381 1.24907 0.96903 0.94955 0.96906 1.69937 1.35801 1.29988 1.17029 0.86733 0.84476 0.78511 0.79430 1.19214 1.21228 1.20676 1.01849 0.72617 0.73407 0.72859 1.93525 1.70640 1.76455 1.57696 1.93559 1.85786 1.30925 1.85993 1.57923 1.25088 1.33364 1.67301 1.21302 1.01612 0.86718 0.95175 1.21661 0.88357 0.91401 0.93670 0.87313 1.22846 0.95799 1.00680 0.97954 1.22427 0.96960 0.98417 0.97230 1.21152 0.95549 0.95251 0.95135 1.21948 1.00268 1.00892 0.96775 1.21880 0.98456 0.98262 1.00532 1.22810 0.92257 0.99573 1.02388 0.92407 0.92706 0.92080 0.90281 0.92150 0.94512 0.93296 0.92741 0.93252 0.91791 0.91150 0.91251 0.91515 0.91863 0.91265 0.93176 0.92061 0.92902 0.93176 0.92831 0.92902 0.88875 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.23 37.15 0.38 -2.32 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -20.27 2.82 -115.66 -0.33 -20.60 16 4 C 0.24 5.92 5.43 -5.19 -0.03 5.89 16 5 C -0.53 -13.25 8.58 -34.44 -0.30 -13.55 16 6 H 0.07 1.62 6.41 -52.49 -0.34 1.28 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 9 Si 0.88 19.96 28.77 -169.99 -4.89 15.07 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 S 2.78 56.16 6.01 -107.50 -0.65 55.51 16 14 O -1.00 -20.60 16.18 -57.17 -0.93 -21.52 16 15 O -0.98 -22.90 15.30 -57.17 -0.87 -23.77 16 16 N -1.00 -16.93 3.23 -112.84 -0.36 -17.30 16 17 C 0.10 1.32 9.06 59.84 0.54 1.87 16 18 C 0.16 2.62 3.25 -66.27 -0.22 2.40 16 19 H 0.11 2.15 7.01 -51.93 -0.36 1.78 16 20 C -0.13 -1.83 6.45 -24.74 -0.16 -1.99 16 21 C -0.11 -1.41 5.90 -25.07 -0.15 -1.56 16 22 C -0.07 -0.95 0.94 -153.39 -0.14 -1.10 16 23 C -0.14 -1.99 8.15 37.16 0.30 -1.69 16 24 C -0.13 -1.54 8.15 37.16 0.30 -1.23 16 25 C -0.13 -2.13 5.22 -25.61 -0.13 -2.26 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.06 0.93 7.26 -51.93 -0.38 0.55 16 31 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.05 1.32 6.91 -51.93 -0.36 0.96 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.06 0.83 7.44 -51.93 -0.39 0.45 16 36 H 0.07 0.83 6.23 -51.93 -0.32 0.51 16 37 H 0.07 0.86 7.23 -51.93 -0.38 0.49 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.68 7.84 -51.93 -0.41 0.28 16 40 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.79 5.06 -51.93 -0.26 1.53 16 48 H 0.07 1.06 5.61 -51.93 -0.29 0.77 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -29.64 378.71 -9.82 -39.46 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.52 Total: 3.20 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.28 Total: -11.68 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.04 Total: -61.98 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.80 Total: -45.30 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.89 Total: 15.07 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.65 Total: 55.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.64 -9.82 -39.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337161624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.354 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds