Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.46677 * 2 1 4 4 C 1.46495 * 120.00038 * 274.99796 * 3 2 1 5 5 C 1.50709 * 109.47282 * 275.00133 * 4 3 2 6 6 H 1.08000 * 119.99508 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00367 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47122 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47413 * 119.99780 * 9 7 5 12 12 H 1.48502 * 109.47352 * 239.99916 * 9 7 5 13 13 S 1.65607 * 120.00121 * 95.00121 * 3 2 1 14 14 O 1.42101 * 106.40144 * 336.45750 * 13 3 2 15 15 O 1.42093 * 106.40011 * 203.53711 * 13 3 2 16 16 N 1.65598 * 107.21895 * 89.99427 * 13 3 2 17 17 C 1.46492 * 120.00548 * 270.00244 * 16 13 3 18 18 C 1.46508 * 119.99851 * 89.99923 * 16 13 3 19 19 H 1.08999 * 110.43187 * 358.91903 * 18 16 13 20 20 C 1.54888 * 110.48145 * 121.45046 * 18 16 13 21 21 C 1.54895 * 102.74386 * 156.62633 * 20 18 16 22 22 C 1.54266 * 104.19648 * 322.05753 * 21 20 18 23 23 C 1.52997 * 110.03475 * 142.89659 * 22 21 20 24 24 C 1.53003 * 110.03482 * 264.28219 * 22 21 20 25 25 C 1.53879 * 106.59869 * 23.61031 * 22 21 20 26 26 H 1.09008 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47560 * 299.99597 * 1 2 3 28 28 H 1.09001 * 109.47565 * 60.00228 * 1 2 3 29 29 H 1.08993 * 109.47565 * 240.00233 * 2 1 3 30 30 H 1.09007 * 109.47287 * 119.99422 * 2 1 3 31 31 H 1.08998 * 109.47302 * 35.00195 * 4 3 2 32 32 H 1.09000 * 109.47595 * 155.00309 * 4 3 2 33 33 H 0.96994 * 120.00692 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47185 * 270.00270 * 17 16 13 35 35 H 1.09002 * 109.47394 * 29.99776 * 17 16 13 36 36 H 1.08993 * 109.47690 * 149.99807 * 17 16 13 37 37 H 1.08998 * 110.75908 * 38.31694 * 20 18 16 38 38 H 1.08996 * 110.76227 * 274.93417 * 20 18 16 39 39 H 1.09001 * 110.48689 * 203.38469 * 21 20 18 40 40 H 1.08993 * 110.48739 * 80.73765 * 21 20 18 41 41 H 1.09002 * 109.47153 * 61.45394 * 23 22 21 42 42 H 1.09001 * 109.46832 * 301.45585 * 23 22 21 43 43 H 1.09004 * 109.47261 * 181.45567 * 23 22 21 44 44 H 1.09005 * 109.46611 * 297.90786 * 24 22 21 45 45 H 1.08997 * 109.47305 * 57.90303 * 24 22 21 46 46 H 1.08995 * 109.47700 * 177.90665 * 24 22 21 47 47 H 1.08998 * 110.03211 * 119.28035 * 25 22 21 48 48 H 1.08999 * 110.03590 * 240.71757 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1719 1.1112 -1.3839 7 6 3.8529 2.3615 -3.0843 8 7 3.0279 3.1864 -3.6915 9 14 5.5092 1.9646 -3.8512 10 1 6.2453 1.0167 -2.9765 11 1 5.3017 1.3479 -5.1860 12 1 6.2979 3.2140 -4.0003 13 16 2.4120 2.1203 1.4287 14 8 1.6867 1.4416 2.4449 15 8 2.3055 3.5187 1.1998 16 7 4.0142 1.8139 1.7138 17 6 4.4089 0.6240 2.4718 18 6 5.0371 2.7327 1.2079 19 1 4.5745 3.5492 0.6535 20 6 5.8931 3.2860 2.3741 21 6 7.2103 3.6930 1.6680 22 6 7.4306 2.5893 0.6129 23 6 8.0172 3.1944 -0.6641 24 6 8.3722 1.5170 1.1648 25 6 6.0488 1.9787 0.3204 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3616 1.8098 -1.9453 32 1 2.0920 3.1803 -1.0756 33 1 3.2797 3.5889 -4.5372 34 1 4.4545 0.8680 3.5332 35 1 3.6771 -0.1678 2.3122 36 1 5.3887 0.2865 2.1342 37 1 6.0775 2.5120 3.1191 38 1 5.4139 4.1537 2.8273 39 1 8.0354 3.7100 2.3800 40 1 7.1006 4.6646 1.1864 41 1 8.9842 3.6455 -0.4414 42 1 7.3403 3.9573 -1.0487 43 1 8.1449 2.4115 -1.4117 44 1 9.3435 1.9625 1.3804 45 1 7.9521 1.1009 2.0804 46 1 8.4921 0.7238 0.4269 47 1 5.7960 2.1135 -0.7313 48 1 6.0483 0.9181 0.5719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337161624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = -113.142973 kcal Electronic energy + Delta-G solvation = -28091.854170 eV Core-core repulsion = 24500.046243 eV Total energy + Delta-G solvation = -3591.807927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31445 -38.35116 -37.65021 -36.88131 -36.36247 -34.66456 -32.05857 -31.52721 -29.37970 -28.42594 -28.11922 -27.18928 -25.04198 -24.72598 -23.23402 -21.44379 -19.83095 -19.58296 -18.76678 -18.57327 -18.18011 -17.45237 -16.61037 -16.15566 -16.06006 -15.45296 -15.04309 -14.88220 -14.73709 -14.57773 -14.46324 -14.26398 -13.82839 -13.77660 -13.62964 -13.50489 -13.34521 -13.20530 -13.07347 -12.94762 -12.81590 -12.73948 -12.65328 -12.37004 -12.34110 -12.27184 -12.21077 -11.95066 -11.66463 -11.63521 -11.47993 -11.31835 -11.25398 -11.15286 -10.56408 -9.90740 -9.67579 -8.13777 -6.24667 -0.28809 1.38941 1.42034 1.51860 1.99136 2.42518 2.57576 3.19061 3.39592 3.63615 3.69563 3.90751 3.96060 4.12785 4.33865 4.42141 4.43600 4.47027 4.52635 4.60428 4.61476 4.67929 4.74064 4.75667 4.83340 4.86765 4.91506 4.98519 5.01538 5.07567 5.11787 5.15626 5.19438 5.22930 5.27646 5.32133 5.40057 5.42631 5.51161 5.57874 5.60251 5.67254 5.76185 5.81665 6.04118 6.15598 6.87488 7.44222 8.95117 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.008264 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.925890 B = 3387.210463 C = 5212.092287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.523 4.523 6 H 0.080 0.920 7 C 0.015 3.985 8 N -0.931 5.931 9 Si 0.939 3.061 10 H -0.248 1.248 11 H -0.288 1.288 12 H -0.282 1.282 13 S 2.790 3.210 14 O -1.002 7.002 15 O -1.019 7.019 16 N -0.995 5.995 17 C 0.087 3.913 18 C 0.149 3.851 19 H 0.067 0.933 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.069 4.069 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -6.574 11.329 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.137 3.863 5 C -0.562 4.562 6 H 0.098 0.902 7 C -0.183 4.183 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.171 1.171 11 H -0.215 1.215 12 H -0.208 1.208 13 S 2.801 3.199 14 O -0.986 6.986 15 O -1.004 7.004 16 N -0.835 5.835 17 C -0.058 4.058 18 C 0.043 3.957 19 H 0.085 0.915 20 C -0.166 4.166 21 C -0.145 4.145 22 C -0.070 4.070 23 C -0.200 4.200 24 C -0.186 4.186 25 C -0.169 4.169 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.924 -5.998 11.744 15.922 hybrid contribution 0.353 0.158 -1.488 1.538 sum 9.277 -5.840 10.255 15.012 Atomic orbital electron populations 1.22196 0.96080 1.03237 1.01172 1.21253 0.94530 0.81352 1.03201 1.57707 1.79307 1.23963 1.22773 1.18710 0.96797 0.90524 0.80255 1.21870 1.02129 1.26866 1.05376 0.90205 1.25671 1.00101 0.94911 0.97664 1.70074 1.37880 1.31620 1.17579 0.85808 0.80730 0.78533 0.78510 1.17083 1.21471 1.20842 1.01417 0.73475 0.72424 0.72607 1.93509 1.71437 1.76220 1.57475 1.93505 1.86731 1.33676 1.86446 1.57675 1.23603 1.34715 1.67489 1.21646 1.02930 0.85327 0.95859 1.21669 0.88340 0.90588 0.95130 0.91522 1.22830 0.95525 1.01050 0.97157 1.22423 0.97178 0.97578 0.97324 1.21163 0.94388 0.96184 0.95227 1.21961 1.01007 1.00129 0.96939 1.21838 0.98647 0.97314 1.00807 1.22760 0.93751 1.00403 0.99939 0.88946 0.93619 0.93537 0.90111 0.89625 0.96404 0.97028 0.92907 0.91314 0.91166 0.88896 0.88882 0.91955 0.88906 0.92204 0.90758 0.94455 0.93752 0.91399 0.91500 0.93194 0.92465 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 10.23 71.98 0.74 -4.48 16 2 C 0.12 4.11 6.06 86.38 0.52 4.63 16 3 N -1.00 -41.43 2.82 -519.85 -1.47 -42.90 16 4 C 0.26 13.24 5.43 85.64 0.47 13.70 16 5 C -0.52 -26.60 8.58 25.60 0.22 -26.38 16 6 H 0.08 3.80 6.41 -2.91 -0.02 3.78 16 7 C 0.02 0.82 5.46 84.65 0.46 1.29 16 8 N -0.93 -54.10 13.29 21.44 0.28 -53.82 16 9 Si 0.94 41.54 28.77 68.60 1.97 43.51 16 10 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 S 2.79 113.71 6.01 -56.49 -0.34 113.37 16 14 O -1.00 -40.48 16.18 -128.00 -2.07 -42.55 16 15 O -1.02 -50.04 15.30 -128.00 -1.96 -51.99 16 16 N -1.00 -32.59 3.23 -510.93 -1.65 -34.24 16 17 C 0.09 2.06 9.06 127.77 1.16 3.22 16 18 C 0.15 4.95 3.25 46.06 0.15 5.10 16 19 H 0.07 2.78 7.01 -2.39 -0.02 2.76 16 20 C -0.13 -3.20 6.45 31.89 0.21 -2.99 16 21 C -0.11 -2.40 5.90 31.67 0.19 -2.21 16 22 C -0.07 -1.70 0.94 -51.46 -0.05 -1.74 16 23 C -0.14 -3.80 8.15 71.98 0.59 -3.21 16 24 C -0.13 -2.39 8.15 71.98 0.59 -1.80 16 25 C -0.13 -4.01 5.22 31.32 0.16 -3.85 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 30 H 0.09 2.44 7.26 -2.38 -0.02 2.43 16 31 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.01 0.68 6.91 -2.39 -0.02 0.66 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.07 1.59 7.44 -2.39 -0.02 1.58 16 36 H 0.09 1.80 6.23 -2.39 -0.01 1.79 16 37 H 0.09 1.93 7.23 -2.39 -0.02 1.91 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.58 7.84 -2.39 -0.02 1.56 16 40 H 0.06 1.45 7.85 -2.39 -0.02 1.43 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 47 H 0.06 2.19 5.06 -2.39 -0.01 2.18 16 48 H 0.08 2.26 5.61 -2.39 -0.01 2.25 16 Total: -1.00 -66.88 378.71 1.08 -65.80 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.92 Total: 21.56 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.40 Total: -18.74 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -2.83 Total: -130.96 kcal Atomic # 8 Polarization: -90.51 SS G_CDS: -4.03 Total: -94.54 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.97 Total: 43.51 kcal Atomic # 16 Polarization: 113.71 SS G_CDS: -0.34 Total: 113.37 kcal Total: -66.88 1.08 -65.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337161624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.341 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds