Wall clock time and date at job start Tue Mar 31 2020 12:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47040 * 2 1 4 4 C 1.46497 * 119.99935 * 274.99545 * 3 2 1 5 5 C 1.50701 * 109.47555 * 279.13263 * 4 3 2 6 6 H 1.07997 * 119.99705 * 4.29430 * 5 4 3 7 7 C 1.37872 * 120.00077 * 184.29295 * 5 4 3 8 8 N 1.31508 * 120.00367 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99905 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47073 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47186 * 119.99779 * 9 7 5 12 12 H 1.48506 * 109.47245 * 240.00149 * 9 7 5 13 13 S 1.65600 * 119.99790 * 95.00073 * 3 2 1 14 14 O 1.42095 * 106.40181 * 329.77144 * 13 3 2 15 15 O 1.42106 * 106.40003 * 196.85337 * 13 3 2 16 16 N 1.65600 * 107.21853 * 83.31444 * 13 3 2 17 17 C 1.46491 * 120.00112 * 66.35592 * 16 13 3 18 18 C 1.53007 * 109.47290 * 163.61105 * 17 16 13 19 19 C 1.53004 * 117.49773 * 134.78451 * 18 17 16 20 20 C 1.52998 * 117.49871 * 0.02562 * 19 18 17 21 21 C 1.53002 * 117.49596 * 145.02339 * 19 18 17 22 22 C 1.53001 * 117.49426 * 66.13040 * 18 17 16 23 23 C 1.53003 * 117.49534 * 214.98210 * 22 18 17 24 24 C 1.52999 * 117.50192 * 359.97438 * 22 18 17 25 25 H 1.09000 * 109.47152 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.46817 * 59.99982 * 1 2 3 27 27 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47152 * 239.99828 * 2 1 3 29 29 H 1.08999 * 109.46817 * 120.00018 * 2 1 3 30 30 H 1.09005 * 109.46948 * 39.13787 * 4 3 2 31 31 H 1.09000 * 109.47175 * 159.13051 * 4 3 2 32 32 H 0.96994 * 120.00788 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99780 * 246.62922 * 16 13 3 34 34 H 1.08995 * 109.47400 * 283.61580 * 17 16 13 35 35 H 1.09004 * 109.47277 * 43.61617 * 17 16 13 36 36 H 1.08997 * 115.55208 * 280.46008 * 18 17 16 37 37 H 1.08997 * 109.47426 * 67.13862 * 20 19 18 38 38 H 1.08996 * 109.47195 * 187.14867 * 20 19 18 39 39 H 1.09003 * 109.47121 * 307.14035 * 20 19 18 40 40 H 1.08999 * 109.46846 * 8.61379 * 21 19 18 41 41 H 1.09000 * 109.46532 * 128.60825 * 21 19 18 42 42 H 1.08994 * 109.47261 * 248.61027 * 21 19 18 43 43 H 1.09006 * 109.47196 * 111.39235 * 23 22 18 44 44 H 1.09006 * 109.46737 * 231.38691 * 23 22 18 45 45 H 1.09001 * 109.47280 * 351.38692 * 23 22 18 46 46 H 1.09002 * 109.47347 * 8.61153 * 24 22 18 47 47 H 1.08998 * 109.47114 * 128.61086 * 24 22 18 48 48 H 1.08997 * 109.47218 * 248.61374 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4495 1.7115 -1.9318 6 1 4.0670 0.9393 -1.4973 7 6 3.8425 2.3339 -3.0976 8 7 3.0909 3.2745 -3.6265 9 14 5.4427 1.8410 -3.9259 10 1 6.0986 0.7678 -3.1365 11 1 5.1583 1.3448 -5.2964 12 1 6.3436 3.0191 -4.0029 13 16 2.4122 2.1202 1.4287 14 8 1.5715 1.5483 2.4213 15 8 2.4594 3.5147 1.1595 16 7 3.9587 1.6642 1.8064 17 6 5.0762 2.0957 0.9632 18 6 6.3911 1.9050 1.7220 19 6 7.5572 1.2659 0.9652 20 6 7.3194 0.8669 -0.4925 21 6 8.9676 1.7607 1.2924 22 6 6.8185 0.4720 2.0455 23 6 7.5471 0.2340 3.3698 24 6 5.8981 -0.6606 1.5861 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3210 1.8652 -1.9179 31 1 2.1658 3.1807 -1.0672 32 1 3.3675 3.7127 -4.4464 33 1 4.1242 1.1081 2.5838 34 1 5.0938 1.5002 0.0505 35 1 4.9535 3.1483 0.7080 36 1 6.6287 2.6782 2.4527 37 1 7.1748 1.7633 -1.0956 38 1 8.1827 0.3146 -0.8636 39 1 6.4311 0.2385 -0.5570 40 1 8.9292 2.4203 2.1593 41 1 9.6096 0.9079 1.5129 42 1 9.3685 2.3062 0.4382 43 1 6.9062 -0.3401 4.0390 44 1 8.4672 -0.3200 3.1837 45 1 7.7869 1.1926 3.8299 46 1 5.1173 -0.2557 0.9422 47 1 6.4787 -1.3987 1.0328 48 1 5.4426 -1.1341 2.4557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337166467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:50 Heat of formation + Delta-G solvation = -71.714316 kcal Electronic energy + Delta-G solvation = -27621.474690 eV Core-core repulsion = 24031.463244 eV Total energy + Delta-G solvation = -3590.011446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.75861 -36.58648 -36.00322 -35.13753 -34.22173 -32.70976 -31.08197 -29.90337 -28.77280 -28.09403 -26.62016 -26.15478 -24.39795 -23.14284 -21.66760 -19.41007 -18.69172 -17.63853 -17.04804 -16.76051 -16.42894 -15.66129 -15.38486 -14.94412 -14.53433 -14.38572 -13.90505 -13.77007 -13.34581 -13.18111 -12.92054 -12.66232 -12.38946 -12.33908 -12.19668 -12.05836 -11.98103 -11.88439 -11.84830 -11.70556 -11.66457 -11.53093 -11.35531 -11.24124 -11.06887 -10.92808 -10.78989 -10.63598 -10.51458 -10.32343 -10.01090 -9.78182 -9.42740 -9.14508 -8.83100 -8.50493 -8.02900 -6.11540 -4.17944 1.36159 3.21924 3.30384 3.31952 3.48897 3.81673 4.24373 4.34442 4.64742 4.76639 4.80671 5.13208 5.15538 5.21666 5.22881 5.43094 5.49776 5.54896 5.62628 5.70210 5.74440 5.78193 5.83273 5.88462 5.95069 5.97033 6.00495 6.06345 6.10488 6.13238 6.13805 6.21071 6.30471 6.33923 6.40580 6.46436 6.62264 6.65914 6.69815 6.74581 7.33886 7.41863 7.50675 7.72330 7.86069 8.16142 8.86249 9.47564 10.96478 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.007463 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.115667 B = 3751.148516 C = 5592.817275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.283 1.283 13 S 2.784 3.216 14 O -1.003 7.003 15 O -0.980 6.980 16 N -1.127 6.127 17 C 0.143 3.857 18 C -0.145 4.145 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.263 0.737 33 H 0.406 0.594 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 -7.381 9.693 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.710 3.290 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.209 1.209 13 S 2.792 3.208 14 O -0.987 6.987 15 O -0.963 6.963 16 N -0.886 5.886 17 C 0.018 3.982 18 C -0.164 4.164 19 C -0.111 4.111 20 C -0.180 4.180 21 C -0.169 4.169 22 C -0.119 4.119 23 C -0.168 4.168 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.887 -6.520 9.862 13.682 hybrid contribution 1.247 -0.636 -0.543 1.501 sum 8.133 -7.157 9.319 14.290 Atomic orbital electron populations 1.22214 0.97014 1.01265 1.02491 1.20932 0.93629 0.82967 1.01871 1.57731 1.78674 1.22854 1.24100 1.19215 0.97193 0.92598 0.78942 1.21540 1.06370 1.21051 1.08545 0.91777 1.24929 0.96978 0.94766 0.97034 1.69933 1.37645 1.24518 1.20446 0.86710 0.83860 0.78803 0.79641 1.18830 1.21215 1.20862 1.01749 0.72674 0.73735 0.72637 1.93542 1.65390 1.79993 1.59747 1.93574 1.86581 1.31012 1.85164 1.55995 1.24776 1.68671 1.39127 1.20981 0.82795 1.01511 0.92914 1.22955 0.95394 0.95660 1.02428 1.21713 0.92786 1.02835 0.93736 1.21490 1.01910 1.01990 0.92644 1.21294 0.93915 1.00355 1.01306 1.21703 1.01172 0.92804 0.96254 1.21317 0.99563 1.01387 0.94564 1.21508 0.98850 0.96585 1.01295 0.92474 0.92127 0.92521 0.90243 0.92279 0.94843 0.92678 0.92675 0.76145 0.89092 0.89980 0.87854 0.91666 0.92690 0.91167 0.92615 0.92475 0.92194 0.92399 0.92526 0.92651 0.90561 0.92490 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.24 6.03 -4.04 -0.02 2.22 16 3 N -0.99 -19.84 2.84 -115.66 -0.33 -20.17 16 4 C 0.24 5.84 5.45 -5.20 -0.03 5.81 16 5 C -0.54 -13.20 8.62 -34.44 -0.30 -13.50 16 6 H 0.06 1.49 6.43 -52.49 -0.34 1.15 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 9 Si 0.88 19.71 29.54 -169.99 -5.02 14.69 16 10 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 S 2.78 54.87 6.08 -107.50 -0.65 54.21 16 14 O -1.00 -20.45 17.17 -57.17 -0.98 -21.43 16 15 O -0.98 -23.02 15.95 -57.17 -0.91 -23.93 16 16 N -1.13 -18.17 5.17 -10.62 -0.05 -18.22 16 17 C 0.14 2.39 5.30 -4.04 -0.02 2.37 16 18 C -0.14 -1.97 5.17 -90.61 -0.47 -2.44 16 19 C -0.11 -1.40 2.70 -154.47 -0.42 -1.82 16 20 C -0.12 -1.79 8.30 37.16 0.31 -1.48 16 21 C -0.11 -1.20 8.88 37.16 0.33 -0.87 16 22 C -0.12 -1.42 2.56 -154.47 -0.40 -1.81 16 23 C -0.11 -1.09 8.88 37.16 0.33 -0.76 16 24 C -0.13 -1.51 7.45 37.16 0.28 -1.23 16 25 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 26 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 30 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.06 1.49 6.79 -51.93 -0.35 1.14 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.41 5.57 7.89 -34.47 -0.27 5.30 16 34 H 0.09 1.63 2.99 -51.93 -0.16 1.47 16 35 H 0.08 1.54 7.69 -51.93 -0.40 1.14 16 36 H 0.10 1.33 7.96 -51.93 -0.41 0.92 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.08 5.23 -51.93 -0.27 0.81 16 40 H 0.05 0.56 7.77 -51.93 -0.40 0.15 16 41 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 44 H 0.06 0.52 8.02 -51.93 -0.42 0.10 16 45 H 0.05 0.52 7.77 -51.93 -0.40 0.12 16 46 H 0.08 1.05 4.86 -51.93 -0.25 0.79 16 47 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 48 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -29.94 382.67 -9.81 -39.76 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.24 Total: 7.63 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.13 Total: -14.21 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 0.35 Total: -62.49 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.89 Total: -45.36 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.65 Total: 54.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.94 -9.81 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.959 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds