Wall clock time and date at job start Tue Mar 31 2020 12:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47040 * 2 1 4 4 C 1.46497 * 119.99935 * 274.99545 * 3 2 1 5 5 C 1.50701 * 109.47555 * 279.13263 * 4 3 2 6 6 H 1.07997 * 119.99705 * 4.29430 * 5 4 3 7 7 C 1.37872 * 120.00077 * 184.29295 * 5 4 3 8 8 N 1.31508 * 120.00367 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99905 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47073 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47186 * 119.99779 * 9 7 5 12 12 H 1.48506 * 109.47245 * 240.00149 * 9 7 5 13 13 S 1.65600 * 119.99790 * 95.00073 * 3 2 1 14 14 O 1.42095 * 106.40181 * 329.77144 * 13 3 2 15 15 O 1.42106 * 106.40003 * 196.85337 * 13 3 2 16 16 N 1.65600 * 107.21853 * 83.31444 * 13 3 2 17 17 C 1.46491 * 120.00112 * 66.35592 * 16 13 3 18 18 C 1.53007 * 109.47290 * 163.61105 * 17 16 13 19 19 C 1.53004 * 117.49773 * 134.78451 * 18 17 16 20 20 C 1.52998 * 117.49871 * 0.02562 * 19 18 17 21 21 C 1.53002 * 117.49596 * 145.02339 * 19 18 17 22 22 C 1.53001 * 117.49426 * 66.13040 * 18 17 16 23 23 C 1.53003 * 117.49534 * 214.98210 * 22 18 17 24 24 C 1.52999 * 117.50192 * 359.97438 * 22 18 17 25 25 H 1.09000 * 109.47152 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.46817 * 59.99982 * 1 2 3 27 27 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47152 * 239.99828 * 2 1 3 29 29 H 1.08999 * 109.46817 * 120.00018 * 2 1 3 30 30 H 1.09005 * 109.46948 * 39.13787 * 4 3 2 31 31 H 1.09000 * 109.47175 * 159.13051 * 4 3 2 32 32 H 0.96994 * 120.00788 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99780 * 246.62922 * 16 13 3 34 34 H 1.08995 * 109.47400 * 283.61580 * 17 16 13 35 35 H 1.09004 * 109.47277 * 43.61617 * 17 16 13 36 36 H 1.08997 * 115.55208 * 280.46008 * 18 17 16 37 37 H 1.08997 * 109.47426 * 67.13862 * 20 19 18 38 38 H 1.08996 * 109.47195 * 187.14867 * 20 19 18 39 39 H 1.09003 * 109.47121 * 307.14035 * 20 19 18 40 40 H 1.08999 * 109.46846 * 8.61379 * 21 19 18 41 41 H 1.09000 * 109.46532 * 128.60825 * 21 19 18 42 42 H 1.08994 * 109.47261 * 248.61027 * 21 19 18 43 43 H 1.09006 * 109.47196 * 111.39235 * 23 22 18 44 44 H 1.09006 * 109.46737 * 231.38691 * 23 22 18 45 45 H 1.09001 * 109.47280 * 351.38692 * 23 22 18 46 46 H 1.09002 * 109.47347 * 8.61153 * 24 22 18 47 47 H 1.08998 * 109.47114 * 128.61086 * 24 22 18 48 48 H 1.08997 * 109.47218 * 248.61374 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4495 1.7115 -1.9318 6 1 4.0670 0.9393 -1.4973 7 6 3.8425 2.3339 -3.0976 8 7 3.0909 3.2745 -3.6265 9 14 5.4427 1.8410 -3.9259 10 1 6.0986 0.7678 -3.1365 11 1 5.1583 1.3448 -5.2964 12 1 6.3436 3.0191 -4.0029 13 16 2.4122 2.1202 1.4287 14 8 1.5715 1.5483 2.4213 15 8 2.4594 3.5147 1.1595 16 7 3.9587 1.6642 1.8064 17 6 5.0762 2.0957 0.9632 18 6 6.3911 1.9050 1.7220 19 6 7.5572 1.2659 0.9652 20 6 7.3194 0.8669 -0.4925 21 6 8.9676 1.7607 1.2924 22 6 6.8185 0.4720 2.0455 23 6 7.5471 0.2340 3.3698 24 6 5.8981 -0.6606 1.5861 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3210 1.8652 -1.9179 31 1 2.1658 3.1807 -1.0672 32 1 3.3675 3.7127 -4.4464 33 1 4.1242 1.1081 2.5838 34 1 5.0938 1.5002 0.0505 35 1 4.9535 3.1483 0.7080 36 1 6.6287 2.6782 2.4527 37 1 7.1748 1.7633 -1.0956 38 1 8.1827 0.3146 -0.8636 39 1 6.4311 0.2385 -0.5570 40 1 8.9292 2.4203 2.1593 41 1 9.6096 0.9079 1.5129 42 1 9.3685 2.3062 0.4382 43 1 6.9062 -0.3401 4.0390 44 1 8.4672 -0.3200 3.1837 45 1 7.7869 1.1926 3.8299 46 1 5.1173 -0.2557 0.9422 47 1 6.4787 -1.3987 1.0328 48 1 5.4426 -1.1341 2.4557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337166467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:49 Heat of formation + Delta-G solvation = -90.796159 kcal Electronic energy + Delta-G solvation = -27622.302141 eV Core-core repulsion = 24031.463244 eV Total energy + Delta-G solvation = -3590.838897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78701 -38.28607 -37.64973 -36.86368 -35.57215 -34.64413 -31.99756 -31.48607 -29.73396 -29.20614 -28.46218 -27.05794 -25.57266 -24.91856 -23.24991 -20.63508 -20.16988 -18.73494 -18.56249 -18.50717 -18.14900 -17.24704 -16.79531 -16.21851 -16.10506 -15.44776 -15.34771 -15.02105 -14.79361 -14.60863 -14.28043 -13.78245 -13.67953 -13.65811 -13.45612 -13.33848 -13.24745 -13.21318 -13.12236 -13.00330 -12.96203 -12.87155 -12.75284 -12.67665 -12.64200 -12.49504 -12.26556 -12.02942 -11.99506 -11.67870 -11.55728 -11.52631 -10.55798 -10.48063 -10.28867 -10.06601 -9.74110 -8.12762 -6.25138 -0.25583 1.42639 1.45693 1.55981 2.02165 2.44753 2.59389 2.79838 3.20358 3.46487 3.68472 3.77853 3.81246 4.00972 4.20544 4.25280 4.33383 4.44153 4.49242 4.61745 4.66920 4.72623 4.75339 4.79214 4.87952 4.97135 5.01035 5.01818 5.05795 5.12032 5.13856 5.17599 5.19822 5.20714 5.22377 5.30071 5.32545 5.44641 5.47957 5.49830 5.56772 5.64772 5.81836 5.95066 6.15715 6.28335 6.87048 7.44525 8.95877 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.007463 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.115667 B = 3751.148516 C = 5592.817275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.994 5.994 4 C 0.258 3.742 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.013 3.987 8 N -0.931 5.931 9 Si 0.941 3.059 10 H -0.237 1.237 11 H -0.289 1.289 12 H -0.287 1.287 13 S 2.797 3.203 14 O -1.007 7.007 15 O -1.021 7.021 16 N -1.107 6.107 17 C 0.148 3.852 18 C -0.159 4.159 19 C -0.112 4.112 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.110 4.110 24 C -0.129 4.129 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.421 0.579 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -9.905 11.263 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.571 5.571 9 Si 0.766 3.234 10 H -0.160 1.160 11 H -0.216 1.216 12 H -0.213 1.213 13 S 2.805 3.195 14 O -0.991 6.991 15 O -1.005 7.005 16 N -0.870 5.870 17 C 0.022 3.978 18 C -0.179 4.179 19 C -0.113 4.113 20 C -0.184 4.184 21 C -0.166 4.166 22 C -0.102 4.102 23 C -0.166 4.166 24 C -0.186 4.186 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.960 -9.085 11.472 17.159 hybrid contribution 0.549 0.120 -0.987 1.136 sum 9.509 -8.965 10.484 16.755 Atomic orbital electron populations 1.22201 0.96136 1.03139 1.01289 1.21234 0.94483 0.81214 1.03290 1.57603 1.79341 1.24060 1.22529 1.18756 0.96636 0.91001 0.80221 1.21815 1.06261 1.20557 1.08009 0.90288 1.25744 1.00132 0.94791 0.97958 1.70076 1.39752 1.26210 1.21099 0.85780 0.80095 0.78995 0.78544 1.15987 1.21557 1.21337 1.01182 0.73235 0.72790 0.72291 1.93527 1.66135 1.79767 1.59625 1.93524 1.87352 1.33939 1.85704 1.55581 1.23321 1.68594 1.39509 1.20847 0.84432 0.99331 0.93188 1.22886 0.94120 0.97658 1.03224 1.21796 0.93535 1.02936 0.93046 1.21488 1.02133 1.00984 0.93750 1.21298 0.92587 1.01101 1.01567 1.21812 1.00241 0.91252 0.96918 1.21345 0.99983 1.02093 0.93221 1.21545 0.98549 0.96763 1.01757 0.93451 0.93536 0.89121 0.89955 0.89631 0.96541 0.96381 0.92872 0.74344 0.90271 0.93020 0.87011 0.93819 0.91094 0.92261 0.91776 0.90850 0.92469 0.91403 0.91276 0.92133 0.92525 0.91811 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.12 4.02 6.03 86.38 0.52 4.54 16 3 N -0.99 -40.17 2.84 -519.84 -1.47 -41.64 16 4 C 0.26 12.86 5.45 85.63 0.47 13.32 16 5 C -0.53 -26.39 8.62 25.60 0.22 -26.17 16 6 H 0.08 3.65 6.43 -2.91 -0.02 3.63 16 7 C 0.01 0.68 5.46 84.65 0.46 1.14 16 8 N -0.93 -53.97 13.29 21.44 0.28 -53.68 16 9 Si 0.94 40.72 29.54 68.60 2.03 42.74 16 10 H -0.24 -9.11 7.11 99.48 0.71 -8.40 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 13 S 2.80 111.04 6.08 -56.49 -0.34 110.70 16 14 O -1.01 -40.20 17.17 -128.00 -2.20 -42.39 16 15 O -1.02 -49.87 15.95 -128.00 -2.04 -51.91 16 16 N -1.11 -34.96 5.17 -187.50 -0.97 -35.93 16 17 C 0.15 4.91 5.30 86.38 0.46 5.37 16 18 C -0.16 -4.08 5.17 -10.79 -0.06 -4.14 16 19 C -0.11 -2.61 2.70 -52.16 -0.14 -2.75 16 20 C -0.13 -3.45 8.30 71.98 0.60 -2.85 16 21 C -0.11 -2.01 8.88 71.98 0.64 -1.37 16 22 C -0.10 -2.12 2.56 -52.16 -0.13 -2.25 16 23 C -0.11 -1.71 8.88 71.98 0.64 -1.07 16 24 C -0.13 -2.73 7.45 71.98 0.54 -2.19 16 25 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 26 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 29 H 0.09 2.34 7.79 -2.39 -0.02 2.32 16 30 H 0.02 0.87 8.10 -2.38 -0.02 0.85 16 31 H 0.02 1.04 6.79 -2.39 -0.02 1.02 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.42 10.75 7.89 -96.74 -0.76 9.99 16 34 H 0.08 2.83 2.99 -2.39 -0.01 2.82 16 35 H 0.05 2.02 7.69 -2.39 -0.02 2.00 16 36 H 0.11 2.68 7.96 -2.39 -0.02 2.66 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.72 5.23 -2.39 -0.01 1.71 16 40 H 0.06 1.08 7.77 -2.39 -0.02 1.06 16 41 H 0.07 1.13 8.02 -2.39 -0.02 1.11 16 42 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 43 H 0.07 0.95 7.92 -2.38 -0.02 0.93 16 44 H 0.07 0.95 8.02 -2.38 -0.02 0.93 16 45 H 0.06 0.91 7.77 -2.39 -0.02 0.89 16 46 H 0.06 1.43 4.86 -2.39 -0.01 1.42 16 47 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 48 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 Total: -1.00 -66.18 382.67 0.41 -65.77 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.18 Total: 29.16 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.95 Total: -22.82 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -2.16 Total: -131.26 kcal Atomic # 8 Polarization: -90.07 SS G_CDS: -4.24 Total: -94.31 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 111.04 SS G_CDS: -0.34 Total: 110.70 kcal Total: -66.18 0.41 -65.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.023 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds