Wall clock time and date at job start Tue Mar 31 2020 12:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47512 * 2 1 4 4 C 1.46498 * 119.99706 * 84.14924 * 3 2 1 5 5 C 1.50703 * 109.46934 * 85.00253 * 4 3 2 6 6 H 1.08005 * 119.99733 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99795 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00331 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99665 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47258 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47486 * 120.00404 * 9 7 5 12 12 H 1.48512 * 109.46973 * 240.00379 * 9 7 5 13 13 S 1.65598 * 120.00220 * 264.15656 * 3 2 1 14 14 O 1.42104 * 106.40225 * 29.38594 * 13 3 2 15 15 O 1.42099 * 106.40521 * 162.31006 * 13 3 2 16 16 N 1.65603 * 107.21425 * 275.84928 * 13 3 2 17 17 C 1.46927 * 120.63143 * 83.81738 * 16 13 3 18 18 C 1.53193 * 108.77110 * 233.58558 * 17 16 13 19 19 C 1.53040 * 109.31224 * 305.35986 * 18 17 16 20 20 C 1.53039 * 109.53668 * 61.36765 * 19 18 17 21 21 H 1.09000 * 109.49428 * 58.58970 * 20 19 18 22 22 C 1.53003 * 109.49510 * 178.64892 * 20 19 18 23 23 C 1.53001 * 109.46725 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47497 * 300.00157 * 22 20 19 25 25 C 1.46929 * 120.63149 * 263.52800 * 16 13 3 26 26 H 1.08999 * 109.47039 * 54.99341 * 1 2 3 27 27 H 1.09003 * 109.46578 * 294.99739 * 1 2 3 28 28 H 1.08996 * 109.47702 * 175.00095 * 1 2 3 29 29 H 1.09001 * 109.47377 * 120.00622 * 2 1 3 30 30 H 1.09004 * 109.46414 * 240.00637 * 2 1 3 31 31 H 1.09001 * 109.47434 * 205.00184 * 4 3 2 32 32 H 1.08995 * 109.47264 * 325.00169 * 4 3 2 33 33 H 0.97001 * 119.99804 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.58802 * 353.36683 * 17 16 13 35 35 H 1.08996 * 109.59258 * 113.79401 * 17 16 13 36 36 H 1.08993 * 109.50413 * 65.31525 * 18 17 16 37 37 H 1.09003 * 109.49571 * 185.41311 * 18 17 16 38 38 H 1.09002 * 109.45956 * 181.39379 * 19 18 17 39 39 H 1.09007 * 109.46014 * 301.36118 * 19 18 17 40 40 H 1.09003 * 109.46790 * 60.00225 * 22 20 19 41 41 H 1.08994 * 109.47196 * 60.00879 * 23 22 20 42 42 H 1.09006 * 109.46580 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47656 * 299.99985 * 23 22 20 44 44 H 1.09010 * 109.47076 * 59.99871 * 24 22 20 45 45 H 1.08999 * 109.47600 * 180.02562 * 24 22 20 46 46 H 1.09003 * 109.47524 * 300.00240 * 24 22 20 47 47 H 1.08998 * 109.59061 * 246.20424 * 25 16 13 48 48 H 1.09000 * 109.58552 * 6.63395 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1407 2.1148 1.2621 5 6 3.4684 1.7980 1.9007 6 1 4.1529 1.1184 1.4147 7 6 3.8098 2.3764 3.1048 8 7 2.9765 3.2043 3.6964 9 14 5.4559 1.9842 3.8960 10 1 6.2038 1.0318 3.0365 11 1 6.2416 3.2348 4.0502 12 1 5.2305 1.3735 5.2309 13 16 2.4321 2.1132 -1.4266 14 8 1.6191 1.5224 -2.4313 15 8 2.4566 3.5103 -1.1685 16 7 3.9916 1.6735 -1.7688 17 6 4.2796 0.4010 -2.4445 18 6 5.2958 -0.3825 -1.6076 19 6 6.5281 0.4906 -1.3601 20 6 6.1204 1.7414 -0.5781 21 1 5.6636 1.4468 0.3667 22 6 7.3584 2.5970 -0.3019 23 6 6.9500 3.8475 0.4793 24 6 8.3647 1.7881 0.5190 25 6 5.1132 2.5515 -1.4083 26 1 -0.3633 0.5895 -0.8417 27 1 -0.3632 0.4343 0.9315 28 1 -0.3634 -1.0237 -0.0895 29 1 1.8934 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.0773 3.1855 1.0677 32 1 1.3347 1.8192 1.9338 33 1 3.2166 3.6109 4.5437 34 1 3.3610 -0.1781 -2.5400 35 1 4.6944 0.5977 -3.4330 36 1 4.8468 -0.6570 -0.6532 37 1 5.5908 -1.2843 -2.1442 38 1 7.2632 -0.0733 -0.7858 39 1 6.9622 0.7853 -2.3155 40 1 7.8143 2.8921 -1.2470 41 1 6.4940 3.5527 1.4243 42 1 7.8320 4.4573 0.6756 43 1 6.2334 4.4237 -0.1059 44 1 8.6555 0.8973 -0.0380 45 1 9.2464 2.3978 0.7161 46 1 7.9089 1.4929 1.4641 47 1 5.5947 2.9201 -2.3140 48 1 4.7449 3.3919 -0.8199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337167285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:24 Heat of formation + Delta-G solvation = -100.696587 kcal Electronic energy + Delta-G solvation = -28357.121672 eV Core-core repulsion = 24765.853461 eV Total energy + Delta-G solvation = -3591.268211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.82982 -36.69861 -35.98348 -35.18110 -35.12919 -32.70112 -31.80947 -29.92003 -29.53935 -27.07895 -26.58886 -23.94443 -23.36321 -23.04654 -21.67537 -20.55058 -19.43696 -18.27340 -17.17019 -16.85425 -16.28618 -15.81025 -15.03348 -14.78158 -14.38649 -14.13200 -13.88246 -13.68756 -13.58160 -13.37159 -13.15130 -12.93966 -12.75952 -12.23163 -12.06565 -11.96243 -11.83308 -11.76692 -11.66200 -11.39529 -11.30894 -11.23677 -11.06637 -11.00765 -10.92468 -10.80773 -10.71970 -10.56274 -10.39359 -10.21188 -10.11380 -9.89710 -9.79139 -9.57642 -8.59813 -8.46582 -7.99638 -6.10008 -4.15173 1.29886 3.21315 3.30205 3.31377 3.49624 4.15352 4.35454 4.83592 4.87136 5.06477 5.10731 5.22979 5.25045 5.28307 5.37866 5.42485 5.58884 5.61372 5.74532 5.78010 5.80799 5.82945 5.93127 5.95645 5.97798 6.05037 6.09331 6.11783 6.17114 6.25171 6.29914 6.33576 6.36611 6.43127 6.58077 6.60463 6.68194 6.69784 6.74205 6.88980 7.00784 7.38956 7.49422 7.69896 7.88500 8.18721 8.89796 9.49891 10.98269 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.008398 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.966275 B = 3333.344517 C = 4765.600854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.246 3.754 5 C -0.532 4.532 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.880 3.120 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.287 1.287 13 S 2.783 3.217 14 O -1.000 7.000 15 O -0.977 6.977 16 N -1.004 6.004 17 C 0.127 3.873 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.106 4.106 21 H 0.099 0.901 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.150 4.150 25 C 0.133 3.867 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -6.201 -9.000 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.124 3.876 5 C -0.571 4.571 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.708 3.292 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.213 1.213 13 S 2.792 3.208 14 O -0.984 6.984 15 O -0.961 6.961 16 N -0.842 5.842 17 C 0.001 3.999 18 C -0.174 4.174 19 C -0.147 4.147 20 C -0.126 4.126 21 H 0.118 0.882 22 C -0.105 4.105 23 C -0.212 4.212 24 C -0.207 4.207 25 C 0.008 3.992 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.747 -5.496 -9.372 12.291 hybrid contribution 1.211 -0.469 0.956 1.613 sum 6.958 -5.965 -8.416 12.443 Atomic orbital electron populations 1.22204 0.96945 1.01254 1.02453 1.20957 0.93666 0.83081 1.01783 1.57771 1.78316 1.22688 1.24448 1.19181 0.97393 0.92124 0.78946 1.21601 1.02443 1.27464 1.05592 0.91588 1.24890 0.96770 0.94921 0.96974 1.69936 1.35697 1.29775 1.17359 0.86756 0.84469 0.78496 0.79480 1.19121 1.20677 1.21312 1.01846 0.72631 0.73376 0.72908 1.93531 1.66727 1.79578 1.58530 1.93562 1.86426 1.30528 1.85569 1.58205 1.24458 1.28700 1.72850 1.21273 0.99353 0.84078 0.95193 1.21915 0.96588 0.97822 1.01035 1.21542 0.96998 0.96367 0.99753 1.21810 0.95124 0.94862 1.00791 0.88247 1.21045 0.95288 0.95583 0.98537 1.21941 1.00850 0.96991 1.01383 1.21921 0.98569 0.99699 1.00522 1.21505 0.86989 0.92512 0.98210 0.92552 0.92143 0.92484 0.90301 0.92382 0.93231 0.94553 0.92764 0.90281 0.91907 0.90952 0.91594 0.91907 0.92527 0.91763 0.91797 0.93375 0.92053 0.92710 0.93200 0.92474 0.92460 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.23 37.16 0.38 -2.30 16 2 C 0.13 2.25 6.07 -4.04 -0.02 2.23 16 3 N -0.99 -20.16 2.83 -115.66 -0.33 -20.49 16 4 C 0.25 5.96 5.41 -5.19 -0.03 5.93 16 5 C -0.53 -13.28 9.30 -34.44 -0.32 -13.60 16 6 H 0.07 1.58 5.86 -52.48 -0.31 1.27 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 9 Si 0.88 20.05 28.63 -169.99 -4.87 15.18 16 10 H -0.27 -5.76 6.97 56.52 0.39 -5.37 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 S 2.78 56.14 6.01 -107.50 -0.65 55.49 16 14 O -1.00 -20.67 16.19 -57.17 -0.93 -21.60 16 15 O -0.98 -22.90 15.13 -57.17 -0.86 -23.76 16 16 N -1.00 -16.93 3.34 -113.27 -0.38 -17.31 16 17 C 0.13 1.74 6.35 -3.71 -0.02 1.72 16 18 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 19 C -0.11 -1.38 4.85 -26.69 -0.13 -1.51 16 20 C -0.11 -1.63 1.93 -90.27 -0.17 -1.80 16 21 H 0.10 1.85 6.08 -51.93 -0.32 1.53 16 22 C -0.09 -1.19 2.50 -90.62 -0.23 -1.42 16 23 C -0.15 -2.42 8.86 37.16 0.33 -2.09 16 24 C -0.15 -1.98 8.84 37.15 0.33 -1.65 16 25 C 0.13 2.18 5.20 -3.49 -0.02 2.16 16 26 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 30 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 31 H 0.05 1.34 6.87 -51.93 -0.36 0.99 16 32 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.17 7.20 -51.93 -0.37 0.80 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 44 H 0.05 0.64 6.40 -51.92 -0.33 0.31 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.10 1.86 5.58 -51.93 -0.29 1.57 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -29.69 374.45 -10.21 -39.90 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.41 Total: 3.63 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.17 Total: -12.50 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.03 Total: -61.98 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.79 Total: -45.36 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.87 Total: 15.18 kcal Atomic # 16 Polarization: 56.14 SS G_CDS: -0.65 Total: 55.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.69 -10.21 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337167285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.799 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds