Wall clock time and date at job start Tue Mar 31 2020 12:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47223 * 2 1 4 4 C 1.46500 * 119.99988 * 274.99971 * 3 2 1 5 5 C 1.50701 * 109.46871 * 293.26945 * 4 3 2 6 6 H 1.08001 * 120.00365 * 5.00020 * 5 4 3 7 7 C 1.37876 * 119.99812 * 184.99485 * 5 4 3 8 8 N 1.31521 * 119.99909 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00147 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46918 * 89.99840 * 9 7 5 11 11 H 1.48504 * 109.47278 * 209.99822 * 9 7 5 12 12 H 1.48493 * 109.47125 * 329.99751 * 9 7 5 13 13 S 1.65605 * 120.00152 * 94.99815 * 3 2 1 14 14 O 1.42094 * 106.40088 * 148.25952 * 13 3 2 15 15 O 1.42106 * 106.39884 * 15.33881 * 13 3 2 16 16 N 1.65593 * 107.21681 * 261.80417 * 13 3 2 17 17 C 1.46491 * 120.00611 * 67.78861 * 16 13 3 18 18 H 1.09004 * 109.47359 * 4.38378 * 17 16 13 19 19 C 1.53004 * 109.47230 * 244.38574 * 17 16 13 20 20 C 1.53003 * 109.47203 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47114 * 59.99955 * 20 19 17 22 22 C 1.52997 * 109.47030 * 299.99828 * 21 20 19 23 23 C 1.53001 * 109.46820 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47672 * 300.00208 * 22 21 20 25 25 C 1.53000 * 109.47698 * 124.38421 * 17 16 13 26 26 H 1.09002 * 109.47357 * 300.00299 * 1 2 3 27 27 H 1.09001 * 109.47148 * 60.00041 * 1 2 3 28 28 H 1.08999 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47110 * 239.99765 * 2 1 3 30 30 H 1.08997 * 109.46846 * 120.00357 * 2 1 3 31 31 H 1.08998 * 109.47284 * 53.26853 * 4 3 2 32 32 H 1.09002 * 109.47392 * 173.27498 * 4 3 2 33 33 H 0.97000 * 120.00023 * 180.02562 * 8 7 5 34 34 H 0.97009 * 119.99953 * 247.51245 * 16 13 3 35 35 H 1.08993 * 109.47033 * 299.99797 * 19 17 16 36 36 H 1.08999 * 109.46712 * 59.99860 * 19 17 16 37 37 H 1.08994 * 109.46998 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.46930 * 300.00183 * 20 19 17 39 39 H 1.09000 * 109.46683 * 59.99994 * 21 20 19 40 40 H 1.09001 * 109.46657 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.46904 * 60.00619 * 23 22 21 42 42 H 1.09011 * 109.46863 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47374 * 300.00184 * 23 22 21 44 44 H 1.08999 * 109.46991 * 59.99243 * 24 22 21 45 45 H 1.08994 * 109.47374 * 180.02562 * 24 22 21 46 46 H 1.09007 * 109.46774 * 300.00214 * 24 22 21 47 47 H 1.09001 * 109.47272 * 300.00622 * 25 17 16 48 48 H 1.09005 * 109.46926 * 60.00349 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.2471 1.4744 -2.0906 6 1 3.7259 0.5685 -1.7494 7 6 3.6319 2.0507 -3.2825 8 7 4.5818 1.4970 -4.0043 9 14 2.8042 3.6180 -3.8724 10 1 3.5441 4.7951 -3.3506 11 1 2.8062 3.6503 -5.3571 12 1 1.4043 3.6546 -3.3785 13 16 2.4122 2.1202 1.4287 14 8 3.4682 3.0245 1.1349 15 8 2.5208 1.0870 2.3983 16 7 1.1142 3.0462 1.8756 17 6 -0.1410 2.4046 2.2740 18 1 -0.0074 1.3228 2.2889 19 6 -1.2400 2.7688 1.2736 20 6 -2.5508 2.0981 1.6893 21 6 -2.9509 2.5814 3.0848 22 6 -1.8520 2.2171 4.0851 23 6 -2.2518 2.7010 5.4804 24 6 -1.6638 0.6989 4.1057 25 6 -0.5409 2.8883 3.6693 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.2168 2.0697 -1.8117 32 1 2.4165 3.1475 -1.0586 33 1 4.8528 1.9026 -4.8426 34 1 1.1862 4.0136 1.8775 35 1 -1.3737 3.8504 1.2586 36 1 -0.9551 2.4241 0.2796 37 1 -3.3335 2.3572 0.9764 38 1 -2.4168 1.0164 1.7040 39 1 -3.0848 3.6630 3.0701 40 1 -3.8845 2.1032 3.3810 41 1 -3.1857 2.2234 5.7768 42 1 -1.4687 2.4418 6.1931 43 1 -2.3855 3.7825 5.4655 44 1 -1.3790 0.3546 3.1115 45 1 -0.8813 0.4393 4.8186 46 1 -2.5978 0.2210 4.4018 47 1 0.2420 2.6289 4.3820 48 1 -0.6747 3.9700 3.6543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337170579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:13 Heat of formation + Delta-G solvation = -101.610532 kcal Electronic energy + Delta-G solvation = -27525.558862 eV Core-core repulsion = 23934.251019 eV Total energy + Delta-G solvation = -3591.307843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.91292 -36.75004 -36.20365 -35.27697 -35.05211 -32.64629 -32.48605 -30.25804 -28.98535 -27.51866 -27.17604 -26.51686 -23.03092 -22.59654 -21.53626 -21.28048 -19.17173 -18.35220 -17.35629 -17.08405 -16.59265 -16.28806 -15.40438 -14.94471 -14.87459 -14.56975 -14.21881 -13.97166 -13.84695 -13.46789 -13.31126 -12.88592 -12.70400 -12.47517 -12.26180 -12.17039 -12.10841 -11.97713 -11.86535 -11.71001 -11.62531 -11.54341 -11.46736 -11.22438 -11.10629 -11.05481 -10.84892 -10.56991 -10.51696 -10.46064 -10.22746 -10.19502 -10.11268 -9.55551 -9.29185 -8.61147 -8.12736 -6.10588 -4.09805 1.13657 3.26043 3.31740 3.33618 3.41856 4.03198 4.37190 4.43702 4.50437 4.59383 4.85593 4.89978 4.95912 5.12152 5.19178 5.20359 5.24936 5.29310 5.38761 5.48412 5.49537 5.50784 5.61477 5.68140 5.71266 5.73298 5.77858 5.81150 5.86071 5.90059 5.93005 6.02580 6.09225 6.16876 6.23776 6.24844 6.30255 6.40537 6.54215 6.62713 6.79935 7.04785 7.14668 7.44762 7.59671 8.47767 8.94239 9.49085 11.02645 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.004421 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.296411 B = 6331.501988 C = 6615.812280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 N -0.984 5.984 4 C 0.228 3.772 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.777 3.223 14 O -0.973 6.973 15 O -0.992 6.992 16 N -1.129 6.129 17 C 0.150 3.850 18 H 0.097 0.903 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.063 4.063 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.649 1.692 14.872 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.010 4.010 3 N -0.825 5.825 4 C 0.104 3.896 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.785 3.215 14 O -0.956 6.956 15 O -0.975 6.975 16 N -0.886 5.886 17 C 0.043 3.957 18 H 0.114 0.886 19 C -0.177 4.177 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.064 4.064 23 C -0.198 4.198 24 C -0.207 4.207 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.701 1.419 15.171 22.607 hybrid contribution -0.607 1.383 -0.767 1.694 sum -17.307 2.801 14.404 22.690 Atomic orbital electron populations 1.22528 0.97507 1.01827 1.02167 1.21178 0.92945 0.82828 1.04066 1.57456 1.81182 1.21681 1.22155 1.19386 0.97507 0.91532 0.81159 1.21307 1.18909 1.12306 1.04399 0.90177 1.24877 0.94637 0.97064 0.96386 1.69893 1.29091 1.40116 1.14226 0.86930 0.80528 0.84506 0.78241 1.19778 1.20986 1.18989 1.02046 0.73139 0.73179 0.73104 1.93628 1.51878 1.65339 1.84799 1.93533 1.86227 1.57840 1.59949 1.56295 1.28677 1.19672 1.83966 1.20887 0.83373 0.97723 0.93714 0.88566 1.22085 0.94464 1.01363 0.99741 1.21581 0.96933 1.00895 0.96475 1.21624 0.97534 1.00971 0.94482 1.20534 0.94847 0.95863 0.95180 1.21853 1.01192 1.00888 0.95826 1.22029 1.01662 0.94517 1.02496 1.21973 0.96802 1.00455 0.96291 0.92681 0.91901 0.92017 0.88950 0.90447 0.95656 0.95012 0.92510 0.75668 0.91498 0.90493 0.91717 0.91300 0.91981 0.91992 0.92684 0.92578 0.92775 0.91894 0.92354 0.92684 0.91184 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.45 37.16 0.35 -2.08 16 2 C 0.12 1.99 6.24 -4.04 -0.03 1.97 16 3 N -0.98 -19.47 2.92 -115.67 -0.34 -19.81 16 4 C 0.23 5.25 4.53 -5.19 -0.02 5.22 16 5 C -0.53 -14.77 9.29 -34.44 -0.32 -15.09 16 6 H 0.08 2.42 7.80 -52.49 -0.41 2.01 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 9 Si 0.87 21.00 27.37 -169.99 -4.65 16.34 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.92 6.69 56.52 0.38 -5.54 16 13 S 2.78 52.93 6.01 -107.50 -0.65 52.29 16 14 O -0.97 -22.50 17.08 -57.17 -0.98 -23.47 16 15 O -0.99 -19.87 15.95 -57.17 -0.91 -20.78 16 16 N -1.13 -15.85 5.44 -4.89 -0.03 -15.88 16 17 C 0.15 1.79 2.08 -67.93 -0.14 1.64 16 18 H 0.10 1.22 3.67 -51.93 -0.19 1.03 16 19 C -0.14 -1.45 4.67 -26.73 -0.12 -1.57 16 20 C -0.12 -1.05 5.60 -26.73 -0.15 -1.20 16 21 C -0.11 -0.86 4.73 -26.73 -0.13 -0.98 16 22 C -0.06 -0.54 0.77 -154.49 -0.12 -0.66 16 23 C -0.14 -1.05 8.47 37.16 0.31 -0.73 16 24 C -0.15 -1.33 7.78 37.16 0.29 -1.04 16 25 C -0.12 -1.18 4.34 -26.71 -0.12 -1.30 16 26 H 0.05 0.66 3.12 -51.93 -0.16 0.50 16 27 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.71 7.39 -51.93 -0.38 1.33 16 30 H 0.08 1.28 6.87 -51.93 -0.36 0.93 16 31 H 0.03 0.56 7.55 -51.93 -0.39 0.16 16 32 H 0.03 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.41 4.98 8.96 -34.47 -0.31 4.67 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.91 6.85 -51.93 -0.36 0.55 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.59 5.97 -51.93 -0.31 0.28 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -33.33 366.53 -9.64 -42.98 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.10 Total: 3.06 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.29 Total: -13.83 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.41 Total: -62.11 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.89 Total: -44.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.65 Total: 16.34 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.65 Total: 52.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.33 -9.64 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337170579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.633 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds