Wall clock time and date at job start Tue Mar 31 2020 12:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47223 * 2 1 4 4 C 1.46500 * 119.99988 * 274.99971 * 3 2 1 5 5 C 1.50701 * 109.46871 * 293.26945 * 4 3 2 6 6 H 1.08001 * 120.00365 * 5.00020 * 5 4 3 7 7 C 1.37876 * 119.99812 * 184.99485 * 5 4 3 8 8 N 1.31521 * 119.99909 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00147 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46918 * 89.99840 * 9 7 5 11 11 H 1.48504 * 109.47278 * 209.99822 * 9 7 5 12 12 H 1.48493 * 109.47125 * 329.99751 * 9 7 5 13 13 S 1.65605 * 120.00152 * 94.99815 * 3 2 1 14 14 O 1.42094 * 106.40088 * 148.25952 * 13 3 2 15 15 O 1.42106 * 106.39884 * 15.33881 * 13 3 2 16 16 N 1.65593 * 107.21681 * 261.80417 * 13 3 2 17 17 C 1.46491 * 120.00611 * 67.78861 * 16 13 3 18 18 H 1.09004 * 109.47359 * 4.38378 * 17 16 13 19 19 C 1.53004 * 109.47230 * 244.38574 * 17 16 13 20 20 C 1.53003 * 109.47203 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47114 * 59.99955 * 20 19 17 22 22 C 1.52997 * 109.47030 * 299.99828 * 21 20 19 23 23 C 1.53001 * 109.46820 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47672 * 300.00208 * 22 21 20 25 25 C 1.53000 * 109.47698 * 124.38421 * 17 16 13 26 26 H 1.09002 * 109.47357 * 300.00299 * 1 2 3 27 27 H 1.09001 * 109.47148 * 60.00041 * 1 2 3 28 28 H 1.08999 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47110 * 239.99765 * 2 1 3 30 30 H 1.08997 * 109.46846 * 120.00357 * 2 1 3 31 31 H 1.08998 * 109.47284 * 53.26853 * 4 3 2 32 32 H 1.09002 * 109.47392 * 173.27498 * 4 3 2 33 33 H 0.97000 * 120.00023 * 180.02562 * 8 7 5 34 34 H 0.97009 * 119.99953 * 247.51245 * 16 13 3 35 35 H 1.08993 * 109.47033 * 299.99797 * 19 17 16 36 36 H 1.08999 * 109.46712 * 59.99860 * 19 17 16 37 37 H 1.08994 * 109.46998 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.46930 * 300.00183 * 20 19 17 39 39 H 1.09000 * 109.46683 * 59.99994 * 21 20 19 40 40 H 1.09001 * 109.46657 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.46904 * 60.00619 * 23 22 21 42 42 H 1.09011 * 109.46863 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47374 * 300.00184 * 23 22 21 44 44 H 1.08999 * 109.46991 * 59.99243 * 24 22 21 45 45 H 1.08994 * 109.47374 * 180.02562 * 24 22 21 46 46 H 1.09007 * 109.46774 * 300.00214 * 24 22 21 47 47 H 1.09001 * 109.47272 * 300.00622 * 25 17 16 48 48 H 1.09005 * 109.46926 * 60.00349 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.2471 1.4744 -2.0906 6 1 3.7259 0.5685 -1.7494 7 6 3.6319 2.0507 -3.2825 8 7 4.5818 1.4970 -4.0043 9 14 2.8042 3.6180 -3.8724 10 1 3.5441 4.7951 -3.3506 11 1 2.8062 3.6503 -5.3571 12 1 1.4043 3.6546 -3.3785 13 16 2.4122 2.1202 1.4287 14 8 3.4682 3.0245 1.1349 15 8 2.5208 1.0870 2.3983 16 7 1.1142 3.0462 1.8756 17 6 -0.1410 2.4046 2.2740 18 1 -0.0074 1.3228 2.2889 19 6 -1.2400 2.7688 1.2736 20 6 -2.5508 2.0981 1.6893 21 6 -2.9509 2.5814 3.0848 22 6 -1.8520 2.2171 4.0851 23 6 -2.2518 2.7010 5.4804 24 6 -1.6638 0.6989 4.1057 25 6 -0.5409 2.8883 3.6693 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.2168 2.0697 -1.8117 32 1 2.4165 3.1475 -1.0586 33 1 4.8528 1.9026 -4.8426 34 1 1.1862 4.0136 1.8775 35 1 -1.3737 3.8504 1.2586 36 1 -0.9551 2.4241 0.2796 37 1 -3.3335 2.3572 0.9764 38 1 -2.4168 1.0164 1.7040 39 1 -3.0848 3.6630 3.0701 40 1 -3.8845 2.1032 3.3810 41 1 -3.1857 2.2234 5.7768 42 1 -1.4687 2.4418 6.1931 43 1 -2.3855 3.7825 5.4655 44 1 -1.3790 0.3546 3.1115 45 1 -0.8813 0.4393 4.8186 46 1 -2.5978 0.2210 4.4018 47 1 0.2420 2.6289 4.3820 48 1 -0.6747 3.9700 3.6543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337170579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:13 Heat of formation + Delta-G solvation = -125.424713 kcal Electronic energy + Delta-G solvation = -27526.591523 eV Core-core repulsion = 23934.251019 eV Total energy + Delta-G solvation = -3592.340503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68332 -38.36621 -37.79390 -36.93109 -36.03969 -34.65756 -33.31992 -31.79068 -29.91190 -28.98800 -28.15593 -27.21222 -24.69227 -23.40744 -23.15319 -22.09732 -20.43216 -19.41717 -19.05086 -18.73050 -18.14481 -17.55144 -16.87632 -16.15875 -15.87175 -15.59216 -15.45292 -15.31042 -14.82114 -14.55615 -14.45632 -14.29179 -14.05061 -13.83812 -13.68370 -13.52114 -13.24280 -13.13297 -13.03732 -12.88612 -12.79134 -12.70900 -12.67475 -12.50098 -12.34079 -12.19253 -12.00231 -11.91128 -11.78039 -11.70694 -11.59369 -11.25059 -11.13983 -10.90782 -10.78347 -10.32166 -9.78107 -8.29356 -6.34482 -0.38398 1.35951 1.39926 1.47820 1.97986 2.34881 2.57255 3.05346 3.37947 3.66567 3.80380 3.85771 3.94125 4.08698 4.22811 4.28026 4.42119 4.45299 4.49307 4.51742 4.52933 4.67097 4.73413 4.81382 4.84742 4.87489 4.93575 5.03015 5.04541 5.06945 5.12063 5.15819 5.23491 5.25512 5.30469 5.31937 5.41963 5.46124 5.48051 5.51084 5.53520 5.56403 5.71079 5.77870 6.15022 6.32630 6.69465 7.28673 8.87599 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.004421 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.296411 B = 6331.501988 C = 6615.812280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 N -0.990 5.990 4 C 0.237 3.763 5 C -0.540 4.540 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.229 1.229 13 S 2.790 3.210 14 O -1.018 7.018 15 O -1.006 7.006 16 N -1.112 6.112 17 C 0.143 3.857 18 H 0.088 0.912 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.061 4.061 23 C -0.138 4.138 24 C -0.153 4.153 25 C -0.115 4.115 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.267 0.733 34 H 0.422 0.578 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.319 3.171 15.722 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.831 5.831 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.152 1.152 13 S 2.799 3.201 14 O -1.002 7.002 15 O -0.989 6.989 16 N -0.874 5.874 17 C 0.036 3.964 18 H 0.106 0.894 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.142 4.142 22 C -0.062 4.062 23 C -0.196 4.196 24 C -0.210 4.210 25 C -0.154 4.154 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.258 0.742 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.389 2.878 16.044 26.104 hybrid contribution 0.581 0.812 -0.927 1.362 sum -19.808 3.690 15.117 25.189 Atomic orbital electron populations 1.22452 0.94026 1.03693 1.02864 1.21328 0.95821 0.81443 1.03028 1.57401 1.81694 1.22705 1.21283 1.19146 0.96516 0.91233 0.81890 1.21633 1.19908 1.11117 1.05232 0.94571 1.25881 0.95352 1.01084 0.96553 1.70060 1.31271 1.42356 1.15005 0.85861 0.81167 0.79062 0.77887 1.19785 1.20402 1.15192 1.01395 0.73242 0.72731 0.72745 1.93561 1.54814 1.66444 1.85378 1.93509 1.86708 1.58614 1.60089 1.55843 1.28358 1.19938 1.83250 1.21171 0.82541 0.97245 0.95397 0.89416 1.22075 0.94693 1.02190 0.98515 1.21589 0.96060 1.00772 0.97275 1.21606 0.97574 1.01492 0.93536 1.20536 0.94170 0.95358 0.96143 1.21834 1.01487 1.01360 0.94896 1.22063 1.02046 0.95044 1.01866 1.21984 0.97428 1.01381 0.94637 0.91193 0.91926 0.89611 0.91248 0.90327 0.93393 0.94915 0.92378 0.74220 0.90558 0.91587 0.90560 0.91253 0.91351 0.90675 0.91620 0.93141 0.92174 0.92500 0.93430 0.91271 0.92500 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 9.45 71.98 0.68 -3.61 16 2 C 0.11 3.77 6.24 86.38 0.54 4.31 16 3 N -0.99 -39.23 2.92 -519.87 -1.52 -40.75 16 4 C 0.24 10.79 4.53 85.63 0.39 11.18 16 5 C -0.54 -30.93 9.29 25.60 0.24 -30.69 16 6 H 0.04 2.32 7.80 -2.91 -0.02 2.29 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 9 Si 0.94 42.72 27.37 68.60 1.88 44.59 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.23 -9.05 6.69 99.48 0.67 -8.38 16 13 S 2.79 106.32 6.01 -56.49 -0.34 105.98 16 14 O -1.02 -47.76 17.08 -128.00 -2.19 -49.95 16 15 O -1.01 -40.50 15.95 -128.00 -2.04 -42.54 16 16 N -1.11 -29.60 5.44 -169.39 -0.92 -30.52 16 17 C 0.14 3.09 2.08 44.99 0.09 3.18 16 18 H 0.09 2.07 3.67 -2.38 -0.01 2.06 16 19 C -0.14 -2.44 4.67 30.60 0.14 -2.29 16 20 C -0.12 -1.64 5.60 30.60 0.17 -1.46 16 21 C -0.10 -1.25 4.73 30.59 0.14 -1.11 16 22 C -0.06 -0.88 0.77 -52.17 -0.04 -0.92 16 23 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 24 C -0.15 -2.38 7.78 71.98 0.56 -1.82 16 25 C -0.11 -2.08 4.34 30.61 0.13 -1.95 16 26 H 0.07 1.53 3.12 -2.39 -0.01 1.53 16 27 H 0.06 1.58 8.01 -2.39 -0.02 1.56 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.68 7.39 -2.39 -0.02 2.66 16 30 H 0.08 2.65 6.87 -2.39 -0.02 2.63 16 31 H 0.05 1.99 7.55 -2.39 -0.02 1.97 16 32 H 0.03 1.50 6.44 -2.39 -0.02 1.49 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.42 9.47 8.96 -96.74 -0.87 8.61 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.35 6.85 -2.39 -0.02 1.34 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.96 5.97 -2.38 -0.01 0.95 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.94 4.81 -2.39 -0.01 0.93 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -74.46 366.53 -0.67 -75.13 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.04 Total: 22.44 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.12 Total: -25.25 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -2.14 Total: -130.41 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.23 Total: -92.49 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.59 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.34 Total: 105.98 kcal Total: -74.46 -0.67 -75.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337170579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.297 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds