Wall clock time and date at job start Tue Mar 31 2020 12:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47376 * 2 1 4 4 C 1.46501 * 120.00067 * 275.00187 * 3 2 1 5 5 C 1.50701 * 109.46699 * 278.97246 * 4 3 2 6 6 H 1.08004 * 119.99999 * 5.32971 * 5 4 3 7 7 C 1.37880 * 119.99751 * 185.33170 * 5 4 3 8 8 N 1.31509 * 120.00025 * 5.42580 * 7 5 4 9 9 Si 1.86797 * 119.99824 * 185.41559 * 7 5 4 10 10 H 1.48505 * 109.46842 * 95.11504 * 9 7 5 11 11 H 1.48493 * 109.47466 * 215.11449 * 9 7 5 12 12 H 1.48499 * 109.47543 * 335.11989 * 9 7 5 13 13 S 1.65599 * 119.99906 * 94.99701 * 3 2 1 14 14 O 1.42100 * 106.40536 * 330.29312 * 13 3 2 15 15 O 1.42103 * 106.40481 * 197.36926 * 13 3 2 16 16 N 1.65606 * 107.21681 * 83.82725 * 13 3 2 17 17 C 1.46501 * 119.99544 * 65.88206 * 16 13 3 18 18 C 1.53008 * 109.46959 * 163.38483 * 17 16 13 19 19 C 1.52999 * 109.47024 * 185.14185 * 18 17 16 20 20 C 1.52994 * 109.47166 * 304.95960 * 19 18 17 21 21 C 1.52999 * 109.47358 * 64.96057 * 19 18 17 22 22 C 1.53007 * 109.46786 * 184.95886 * 19 18 17 23 23 C 1.52994 * 117.49887 * 248.74563 * 22 19 18 24 24 C 1.52995 * 117.49351 * 180.08398 * 22 19 18 25 25 H 1.08995 * 109.47606 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47167 * 300.00166 * 1 2 3 27 27 H 1.09003 * 109.46699 * 59.99792 * 1 2 3 28 28 H 1.08994 * 109.46799 * 239.99788 * 2 1 3 29 29 H 1.09003 * 109.46699 * 120.00207 * 2 1 3 30 30 H 1.08995 * 109.46969 * 38.97028 * 4 3 2 31 31 H 1.08999 * 109.46761 * 158.97460 * 4 3 2 32 32 H 0.96998 * 119.99808 * 180.02562 * 8 7 5 33 33 H 0.96994 * 120.00248 * 245.87366 * 16 13 3 34 34 H 1.08994 * 109.47327 * 283.37825 * 17 16 13 35 35 H 1.08994 * 109.47397 * 43.38189 * 17 16 13 36 36 H 1.09000 * 109.46604 * 305.14331 * 18 17 16 37 37 H 1.09001 * 109.47159 * 65.13555 * 18 17 16 38 38 H 1.09000 * 109.47522 * 65.48784 * 20 19 18 39 39 H 1.08997 * 109.47134 * 185.48863 * 20 19 18 40 40 H 1.09011 * 109.47089 * 305.48873 * 20 19 18 41 41 H 1.09000 * 109.47191 * 59.99460 * 21 19 18 42 42 H 1.08994 * 109.47373 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46685 * 300.00267 * 21 19 18 44 44 H 1.08998 * 115.54587 * 34.41865 * 22 19 18 45 45 H 1.09003 * 117.50014 * 0.02562 * 23 22 19 46 46 H 1.08999 * 117.50094 * 145.02287 * 23 22 19 47 47 H 1.09000 * 117.49793 * 214.97788 * 24 22 19 48 48 H 1.08996 * 117.50490 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4514 1.7142 -1.9299 6 1 4.0618 0.9319 -1.5035 7 6 3.8551 2.3521 -3.0837 8 7 3.1686 3.3750 -3.5441 9 14 5.3772 1.7636 -3.9926 10 1 4.9770 0.8285 -5.0746 11 1 6.0835 2.9293 -4.5819 12 1 6.2811 1.0650 -3.0439 13 16 2.4122 2.1201 1.4287 14 8 1.5800 1.5396 2.4235 15 8 2.4476 3.5155 1.1624 16 7 3.9637 1.6752 1.7993 17 6 5.0734 2.1085 0.9466 18 6 6.3936 1.9350 1.7003 19 6 7.5387 2.5054 0.8612 20 6 7.5350 1.8483 -0.5204 21 6 7.3549 4.0165 0.7077 22 6 8.8714 2.2219 1.5573 23 6 9.6346 3.4154 2.1351 24 6 10.1460 2.7183 0.8719 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3225 1.8630 -1.9189 31 1 2.1631 3.1807 -1.0673 32 1 3.4525 3.8235 -4.3560 33 1 4.1377 1.1279 2.5810 34 1 5.0913 1.5051 0.0391 35 1 4.9408 3.1577 0.6828 36 1 6.3412 2.4647 2.6515 37 1 6.5706 0.8752 1.8840 38 1 6.6278 2.1304 -1.0546 39 1 8.4067 2.1815 -1.0836 40 1 7.5679 0.7645 -0.4074 41 1 7.3575 4.4847 1.6920 42 1 8.1704 4.4229 0.1095 43 1 6.4054 4.2185 0.2118 44 1 8.9267 1.2784 2.1003 45 1 9.1871 4.4026 2.0197 46 1 10.1924 3.2571 3.0581 47 1 11.0400 2.1017 0.9644 48 1 10.0351 3.2473 -0.0747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339107723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:23 Heat of formation + Delta-G solvation = -72.875828 kcal Electronic energy + Delta-G solvation = -27079.671692 eV Core-core repulsion = 23489.609879 eV Total energy + Delta-G solvation = -3590.061813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.23851 -36.60865 -36.03724 -35.60055 -35.13668 -32.98625 -32.71556 -29.90556 -27.87444 -27.21366 -26.61689 -24.52604 -23.14428 -22.23509 -21.70091 -21.36022 -18.88735 -18.06364 -17.07575 -16.76876 -16.42021 -16.23874 -15.47862 -15.07231 -14.93905 -14.40325 -14.13204 -13.81637 -13.62139 -13.22181 -12.98003 -12.87706 -12.51376 -12.09047 -12.06886 -11.92095 -11.78710 -11.64405 -11.52708 -11.36731 -11.36153 -11.23940 -11.11363 -11.02743 -10.88921 -10.83146 -10.74446 -10.51420 -10.35133 -10.29923 -10.09705 -9.92820 -9.78390 -9.75540 -8.84860 -8.49547 -8.03349 -6.12019 -4.17824 1.36916 3.22191 3.30846 3.31688 3.60118 3.80892 4.22913 4.34134 4.59357 4.87128 4.91582 5.04533 5.13343 5.20613 5.23195 5.29553 5.42717 5.54843 5.58802 5.63509 5.74517 5.77889 5.81652 5.83602 5.89217 5.93562 6.04619 6.09791 6.11444 6.15209 6.21791 6.24728 6.32407 6.37578 6.45465 6.60094 6.63866 6.69394 6.71668 6.75260 7.32495 7.41421 7.50182 7.71957 7.85957 8.16319 8.86315 9.47083 10.95823 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.005861 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.737754 B = 4776.274448 C = 6507.064541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.785 3.215 14 O -1.004 7.004 15 O -0.979 6.979 16 N -1.132 6.132 17 C 0.113 3.887 18 C -0.110 4.110 19 C -0.030 4.030 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.187 4.187 24 C -0.181 4.181 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 -4.420 8.800 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.188 1.188 13 S 2.793 3.207 14 O -0.988 6.988 15 O -0.962 6.962 16 N -0.890 5.890 17 C -0.012 4.012 18 C -0.150 4.150 19 C -0.031 4.031 20 C -0.206 4.206 21 C -0.209 4.209 22 C -0.155 4.155 23 C -0.224 4.224 24 C -0.218 4.218 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.884 -3.558 8.974 12.464 hybrid contribution 1.269 -0.859 -0.592 1.643 sum 9.153 -4.417 8.383 13.174 Atomic orbital electron populations 1.22216 0.97010 1.01284 1.02477 1.20935 0.93612 0.82986 1.01914 1.57729 1.78681 1.22845 1.24122 1.19225 0.97031 0.92772 0.78975 1.21528 1.06587 1.20108 1.09479 0.91765 1.24925 0.96918 0.94460 0.97320 1.69941 1.39847 1.20112 1.22465 0.86772 0.83308 0.78589 0.80435 1.20906 1.21158 1.18796 1.01727 0.72638 0.73746 0.72613 1.93541 1.65848 1.79743 1.59642 1.93575 1.86560 1.30906 1.85185 1.55987 1.25322 1.69330 1.38363 1.21592 0.84498 1.01729 0.93397 1.21801 0.93536 1.00928 0.98685 1.20003 0.91995 0.95882 0.95182 1.22045 1.02850 1.00314 0.95375 1.22112 1.02644 0.94538 1.01630 1.22353 0.92144 0.98092 1.02934 1.23145 1.04130 0.97993 0.97088 1.22928 0.97536 1.04305 0.97004 0.92491 0.92475 0.92139 0.90249 0.92250 0.95041 0.92429 0.92626 0.76407 0.89501 0.90055 0.91617 0.91743 0.90649 0.93023 0.92760 0.92429 0.92774 0.91162 0.88175 0.88068 0.89494 0.89344 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.26 6.03 -4.04 -0.02 2.24 16 3 N -0.99 -20.07 2.84 -115.67 -0.33 -20.40 16 4 C 0.24 5.84 5.47 -5.19 -0.03 5.81 16 5 C -0.54 -13.28 8.53 -34.44 -0.29 -13.57 16 6 H 0.06 1.51 6.47 -52.48 -0.34 1.17 16 7 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 8 N -0.89 -24.63 13.28 55.43 0.74 -23.90 16 9 Si 0.88 19.65 29.18 -169.99 -4.96 14.68 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.26 -5.47 6.70 56.52 0.38 -5.10 16 13 S 2.78 55.22 6.08 -107.50 -0.65 54.57 16 14 O -1.00 -20.56 17.17 -57.17 -0.98 -21.54 16 15 O -0.98 -22.97 15.97 -57.17 -0.91 -23.89 16 16 N -1.13 -18.24 6.05 -10.61 -0.06 -18.30 16 17 C 0.11 1.87 5.38 -4.04 -0.02 1.85 16 18 C -0.11 -1.44 4.40 -26.73 -0.12 -1.56 16 19 C -0.03 -0.38 0.65 -154.51 -0.10 -0.48 16 20 C -0.15 -2.16 7.72 37.15 0.29 -1.87 16 21 C -0.15 -2.02 6.83 37.16 0.25 -1.77 16 22 C -0.14 -1.51 5.14 -90.62 -0.47 -1.97 16 23 C -0.19 -1.87 9.57 -26.70 -0.26 -2.13 16 24 C -0.18 -1.86 9.31 -26.69 -0.25 -2.10 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.95 7.97 -51.93 -0.41 0.53 16 27 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 28 H 0.08 1.35 8.11 -51.93 -0.42 0.92 16 29 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 30 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.06 1.56 6.77 -51.93 -0.35 1.21 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.40 5.31 8.66 -34.48 -0.30 5.01 16 34 H 0.09 1.56 4.57 -51.93 -0.24 1.32 16 35 H 0.08 1.51 5.89 -51.93 -0.31 1.21 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.29 6.03 -51.93 -0.31 0.98 16 39 H 0.05 0.70 7.12 -51.93 -0.37 0.34 16 40 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.70 6.97 -51.93 -0.36 0.33 16 42 H 0.05 0.67 7.07 -51.93 -0.37 0.30 16 43 H 0.07 1.08 6.46 -51.93 -0.34 0.74 16 44 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 45 H 0.10 1.03 5.85 -51.93 -0.30 0.72 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.01 7.05 -51.93 -0.37 0.65 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -29.88 380.48 -10.31 -40.19 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.15 Total: 9.10 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.73 Total: -16.25 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.34 Total: -62.60 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.89 Total: -45.43 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.96 Total: 14.68 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -0.65 Total: 54.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.88 -10.31 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339107723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.686 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds