Wall clock time and date at job start Tue Mar 31 2020 12:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47376 * 2 1 4 4 C 1.46501 * 120.00067 * 275.00187 * 3 2 1 5 5 C 1.50701 * 109.46699 * 278.97246 * 4 3 2 6 6 H 1.08004 * 119.99999 * 5.32971 * 5 4 3 7 7 C 1.37880 * 119.99751 * 185.33170 * 5 4 3 8 8 N 1.31509 * 120.00025 * 5.42580 * 7 5 4 9 9 Si 1.86797 * 119.99824 * 185.41559 * 7 5 4 10 10 H 1.48505 * 109.46842 * 95.11504 * 9 7 5 11 11 H 1.48493 * 109.47466 * 215.11449 * 9 7 5 12 12 H 1.48499 * 109.47543 * 335.11989 * 9 7 5 13 13 S 1.65599 * 119.99906 * 94.99701 * 3 2 1 14 14 O 1.42100 * 106.40536 * 330.29312 * 13 3 2 15 15 O 1.42103 * 106.40481 * 197.36926 * 13 3 2 16 16 N 1.65606 * 107.21681 * 83.82725 * 13 3 2 17 17 C 1.46501 * 119.99544 * 65.88206 * 16 13 3 18 18 C 1.53008 * 109.46959 * 163.38483 * 17 16 13 19 19 C 1.52999 * 109.47024 * 185.14185 * 18 17 16 20 20 C 1.52994 * 109.47166 * 304.95960 * 19 18 17 21 21 C 1.52999 * 109.47358 * 64.96057 * 19 18 17 22 22 C 1.53007 * 109.46786 * 184.95886 * 19 18 17 23 23 C 1.52994 * 117.49887 * 248.74563 * 22 19 18 24 24 C 1.52995 * 117.49351 * 180.08398 * 22 19 18 25 25 H 1.08995 * 109.47606 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47167 * 300.00166 * 1 2 3 27 27 H 1.09003 * 109.46699 * 59.99792 * 1 2 3 28 28 H 1.08994 * 109.46799 * 239.99788 * 2 1 3 29 29 H 1.09003 * 109.46699 * 120.00207 * 2 1 3 30 30 H 1.08995 * 109.46969 * 38.97028 * 4 3 2 31 31 H 1.08999 * 109.46761 * 158.97460 * 4 3 2 32 32 H 0.96998 * 119.99808 * 180.02562 * 8 7 5 33 33 H 0.96994 * 120.00248 * 245.87366 * 16 13 3 34 34 H 1.08994 * 109.47327 * 283.37825 * 17 16 13 35 35 H 1.08994 * 109.47397 * 43.38189 * 17 16 13 36 36 H 1.09000 * 109.46604 * 305.14331 * 18 17 16 37 37 H 1.09001 * 109.47159 * 65.13555 * 18 17 16 38 38 H 1.09000 * 109.47522 * 65.48784 * 20 19 18 39 39 H 1.08997 * 109.47134 * 185.48863 * 20 19 18 40 40 H 1.09011 * 109.47089 * 305.48873 * 20 19 18 41 41 H 1.09000 * 109.47191 * 59.99460 * 21 19 18 42 42 H 1.08994 * 109.47373 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46685 * 300.00267 * 21 19 18 44 44 H 1.08998 * 115.54587 * 34.41865 * 22 19 18 45 45 H 1.09003 * 117.50014 * 0.02562 * 23 22 19 46 46 H 1.08999 * 117.50094 * 145.02287 * 23 22 19 47 47 H 1.09000 * 117.49793 * 214.97788 * 24 22 19 48 48 H 1.08996 * 117.50490 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4514 1.7142 -1.9299 6 1 4.0618 0.9319 -1.5035 7 6 3.8551 2.3521 -3.0837 8 7 3.1686 3.3750 -3.5441 9 14 5.3772 1.7636 -3.9926 10 1 4.9770 0.8285 -5.0746 11 1 6.0835 2.9293 -4.5819 12 1 6.2811 1.0650 -3.0439 13 16 2.4122 2.1201 1.4287 14 8 1.5800 1.5396 2.4235 15 8 2.4476 3.5155 1.1624 16 7 3.9637 1.6752 1.7993 17 6 5.0734 2.1085 0.9466 18 6 6.3936 1.9350 1.7003 19 6 7.5387 2.5054 0.8612 20 6 7.5350 1.8483 -0.5204 21 6 7.3549 4.0165 0.7077 22 6 8.8714 2.2219 1.5573 23 6 9.6346 3.4154 2.1351 24 6 10.1460 2.7183 0.8719 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3225 1.8630 -1.9189 31 1 2.1631 3.1807 -1.0673 32 1 3.4525 3.8235 -4.3560 33 1 4.1377 1.1279 2.5810 34 1 5.0913 1.5051 0.0391 35 1 4.9408 3.1577 0.6828 36 1 6.3412 2.4647 2.6515 37 1 6.5706 0.8752 1.8840 38 1 6.6278 2.1304 -1.0546 39 1 8.4067 2.1815 -1.0836 40 1 7.5679 0.7645 -0.4074 41 1 7.3575 4.4847 1.6920 42 1 8.1704 4.4229 0.1095 43 1 6.4054 4.2185 0.2118 44 1 8.9267 1.2784 2.1003 45 1 9.1871 4.4026 2.0197 46 1 10.1924 3.2571 3.0581 47 1 11.0400 2.1017 0.9644 48 1 10.0351 3.2473 -0.0747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339107723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:22 Heat of formation + Delta-G solvation = -92.097506 kcal Electronic energy + Delta-G solvation = -27080.505207 eV Core-core repulsion = 23489.609879 eV Total energy + Delta-G solvation = -3590.895327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20662 -38.29167 -37.66311 -36.86228 -36.79592 -34.64370 -34.12075 -31.48728 -29.06828 -28.47125 -28.29633 -25.65063 -24.91394 -23.25957 -23.00510 -22.44965 -20.41101 -19.15846 -18.61327 -18.55459 -18.14852 -17.48992 -16.94854 -16.50685 -16.05827 -15.99477 -15.33023 -15.20138 -14.87434 -14.67980 -14.56748 -14.12940 -13.80742 -13.71376 -13.58434 -13.34007 -13.17565 -13.14640 -12.96055 -12.92267 -12.76191 -12.68826 -12.58236 -12.38603 -12.26400 -12.06538 -12.02080 -11.81045 -11.78681 -11.68947 -11.53912 -11.28754 -10.94187 -10.67223 -10.52962 -10.25554 -9.74861 -8.12245 -6.24143 -0.24469 1.44046 1.46618 1.56166 2.05053 2.45692 2.65309 2.99670 3.20409 3.47861 3.69267 3.86396 4.00754 4.02202 4.19365 4.22753 4.31828 4.41447 4.45303 4.49902 4.50669 4.66151 4.71917 4.76505 4.79101 4.82761 4.88462 5.01110 5.03375 5.08087 5.14872 5.18032 5.19560 5.20026 5.31155 5.35673 5.37441 5.44006 5.45334 5.53908 5.55948 5.57670 5.81625 5.95875 6.16436 6.30886 6.87382 7.45047 8.96146 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.005861 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.737754 B = 4776.274448 C = 6507.064541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.257 3.743 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.016 3.984 8 N -0.929 5.929 9 Si 0.940 3.060 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.238 1.238 13 S 2.797 3.203 14 O -1.008 7.008 15 O -1.020 7.020 16 N -1.114 6.114 17 C 0.115 3.885 18 C -0.103 4.103 19 C -0.027 4.027 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.182 4.182 24 C -0.181 4.181 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.422 0.578 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.688 -6.692 10.296 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.133 3.867 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.183 4.183 8 N -0.569 5.569 9 Si 0.765 3.235 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.161 1.161 13 S 2.805 3.195 14 O -0.992 6.992 15 O -1.004 7.004 16 N -0.877 5.877 17 C -0.011 4.011 18 C -0.142 4.142 19 C -0.028 4.028 20 C -0.207 4.207 21 C -0.209 4.209 22 C -0.159 4.159 23 C -0.219 4.219 24 C -0.218 4.218 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.132 0.868 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.068 -5.871 10.509 15.693 hybrid contribution 0.546 -0.149 -1.008 1.156 sum 10.614 -6.019 9.501 15.465 Atomic orbital electron populations 1.22204 0.96087 1.03170 1.01312 1.21243 0.94527 0.81248 1.03323 1.57620 1.79386 1.24064 1.22624 1.18775 0.96528 0.91161 0.80244 1.21782 1.06463 1.19650 1.09023 0.90400 1.25717 0.99788 0.94475 0.98341 1.70086 1.41952 1.21774 1.23097 0.85837 0.80324 0.77929 0.79425 1.20912 1.21861 1.16088 1.01181 0.73262 0.72821 0.72253 1.93526 1.66616 1.79518 1.59507 1.93527 1.87334 1.33786 1.85705 1.55570 1.23825 1.69338 1.38924 1.21542 0.86203 0.99724 0.93603 1.21784 0.91276 1.02601 0.98544 1.19948 0.93283 0.94975 0.94577 1.22032 1.01440 1.01013 0.96170 1.22109 1.01203 0.95574 1.02024 1.22268 0.90991 0.99152 1.03480 1.23199 1.03653 0.97352 0.97657 1.22981 0.97649 1.04334 0.96800 0.89090 0.93451 0.93483 0.89933 0.89644 0.96631 0.96152 0.92855 0.74220 0.90905 0.92864 0.90390 0.89494 0.93808 0.92470 0.91851 0.91295 0.92194 0.94175 0.86815 0.88542 0.87950 0.87936 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.01 6.03 86.38 0.52 4.53 16 3 N -1.00 -40.50 2.84 -519.86 -1.47 -41.97 16 4 C 0.26 12.82 5.47 85.63 0.47 13.29 16 5 C -0.53 -26.55 8.53 25.60 0.22 -26.33 16 6 H 0.08 3.62 6.47 -2.91 -0.02 3.60 16 7 C 0.02 0.86 5.45 84.66 0.46 1.32 16 8 N -0.93 -53.62 13.28 21.45 0.28 -53.33 16 9 Si 0.94 40.55 29.18 68.60 2.00 42.55 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.24 -9.17 6.70 99.48 0.67 -8.51 16 13 S 2.80 111.01 6.08 -56.49 -0.34 110.66 16 14 O -1.01 -40.23 17.17 -128.00 -2.20 -42.42 16 15 O -1.02 -49.62 15.97 -128.00 -2.04 -51.67 16 16 N -1.11 -34.55 6.05 -187.49 -1.13 -35.68 16 17 C 0.12 3.73 5.38 86.38 0.46 4.19 16 18 C -0.10 -2.45 4.40 30.60 0.13 -2.32 16 19 C -0.03 -0.64 0.65 -52.18 -0.03 -0.68 16 20 C -0.15 -4.10 7.72 71.98 0.56 -3.55 16 21 C -0.15 -3.98 6.83 71.98 0.49 -3.48 16 22 C -0.14 -2.65 5.14 -10.79 -0.06 -2.71 16 23 C -0.18 -3.10 9.57 30.62 0.29 -2.80 16 24 C -0.18 -3.19 9.31 30.62 0.29 -2.91 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.52 7.97 -2.38 -0.02 1.50 16 27 H 0.05 1.53 8.11 -2.39 -0.02 1.52 16 28 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 29 H 0.09 2.37 7.78 -2.39 -0.02 2.35 16 30 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.02 1.17 6.77 -2.39 -0.02 1.16 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.42 10.01 8.66 -96.75 -0.84 9.17 16 34 H 0.07 2.58 4.57 -2.39 -0.01 2.57 16 35 H 0.05 2.05 5.89 -2.39 -0.01 2.03 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.47 6.03 -2.39 -0.01 1.46 16 39 H 0.06 1.47 7.12 -2.39 -0.02 1.45 16 40 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.07 1.60 6.97 -2.39 -0.02 1.59 16 42 H 0.06 1.45 7.07 -2.39 -0.02 1.44 16 43 H 0.04 1.28 6.46 -2.39 -0.02 1.26 16 44 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 45 H 0.10 1.74 5.85 -2.39 -0.01 1.73 16 46 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.09 1.67 7.05 -2.39 -0.02 1.65 16 Total: -1.00 -66.09 380.48 -0.30 -66.39 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.07 Total: 31.32 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 4.54 Total: -25.85 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -2.32 Total: -130.98 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -4.24 Total: -94.09 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.00 Total: 42.55 kcal Atomic # 16 Polarization: 111.01 SS G_CDS: -0.34 Total: 110.66 kcal Total: -66.09 -0.30 -66.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339107723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.708 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds