Wall clock time and date at job start Tue Mar 31 2020 12:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47252 * 2 1 4 4 O 1.42100 * 110.54134 * 68.37404 * 3 2 1 5 5 O 1.42097 * 110.53900 * 291.62405 * 3 2 1 6 6 N 1.65596 * 104.44849 * 179.97438 * 3 2 1 7 7 C 1.46927 * 120.62817 * 90.00081 * 6 3 2 8 8 C 1.53201 * 108.89022 * 233.67115 * 7 6 3 9 9 C 1.53040 * 109.31239 * 305.29257 * 8 7 6 10 10 C 1.52997 * 109.45814 * 181.38264 * 9 8 7 11 11 H 1.09004 * 109.46908 * 182.39885 * 10 9 8 12 12 C 1.52999 * 109.47526 * 302.39971 * 10 9 8 13 13 N 1.46899 * 109.46755 * 62.40255 * 10 9 8 14 14 C 1.46896 * 111.00054 * 51.02362 * 13 10 9 15 15 C 1.46907 * 110.99695 * 174.97413 * 13 10 9 16 16 C 1.50702 * 109.46786 * 169.99816 * 15 13 10 17 17 H 1.08005 * 120.00217 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99934 * 179.97438 * 16 15 13 19 19 N 1.31520 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47198 * 60.00899 * 20 18 16 22 22 H 1.48507 * 109.47077 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47134 * 300.00162 * 20 18 16 24 24 C 1.53051 * 109.53588 * 61.36656 * 9 8 7 25 25 C 1.47208 * 120.81405 * 270.13411 * 6 3 2 26 26 H 1.08996 * 109.47359 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47387 * 300.00359 * 1 2 3 28 28 H 1.09002 * 109.47255 * 60.00133 * 1 2 3 29 29 H 1.09005 * 109.47092 * 239.99920 * 2 1 3 30 30 H 1.09003 * 109.46516 * 119.99939 * 2 1 3 31 31 H 1.09000 * 109.58264 * 113.81780 * 7 6 3 32 32 H 1.08991 * 109.58936 * 353.53220 * 7 6 3 33 33 H 1.08991 * 109.49576 * 65.24952 * 8 7 6 34 34 H 1.08998 * 109.49274 * 185.34578 * 8 7 6 35 35 H 1.08995 * 109.46664 * 301.35077 * 9 8 7 36 36 H 1.09002 * 109.47125 * 300.00302 * 12 10 9 37 37 H 1.09003 * 109.46577 * 60.00027 * 12 10 9 38 38 H 1.08997 * 109.47422 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47485 * 53.63120 * 14 13 10 40 40 H 1.09002 * 109.47236 * 173.62382 * 14 13 10 41 41 H 1.08996 * 109.47238 * 293.62708 * 14 13 10 42 42 H 1.08996 * 109.47226 * 289.99730 * 15 13 10 43 43 H 1.09003 * 109.46833 * 50.00338 * 15 13 10 44 44 H 0.96991 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.49412 * 58.58384 * 24 9 8 46 46 H 1.08999 * 109.49745 * 178.64703 * 24 9 8 47 47 H 1.08996 * 109.53212 * 6.54303 * 25 6 3 48 48 H 1.08996 * 109.67810 * 246.23311 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.5305 1.4995 -1.2633 8 6 5.4160 0.2494 -1.2520 9 6 6.3007 0.2670 -0.0034 10 6 7.2111 -0.9626 -0.0064 11 1 7.8110 -0.9727 0.9037 12 6 6.3562 -2.2300 -0.0677 13 7 8.0975 -0.9128 -1.1767 14 6 8.7789 0.3855 -1.2660 15 6 9.0675 -2.0157 -1.1498 16 6 9.7910 -2.0807 -2.4702 17 1 9.5542 -1.3731 -3.2511 18 6 10.7559 -3.0427 -2.6809 19 7 11.0446 -3.9040 -1.7298 20 14 11.6532 -3.1227 -4.3174 21 1 12.3661 -1.8418 -4.5542 22 1 12.6337 -4.2378 -4.2902 23 1 10.6727 -3.3528 -5.4087 24 6 5.4201 0.2464 1.2482 25 6 4.5347 1.4964 1.2653 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 5.1537 2.3878 -1.3662 32 1 3.8316 1.4447 -2.0978 33 1 4.7879 -0.6412 -1.2404 34 1 6.0441 0.2406 -2.1428 35 1 6.9108 1.1703 -0.0032 36 1 5.6984 -2.2670 0.8007 37 1 5.7563 -2.2199 -0.9777 38 1 7.0047 -3.1061 -0.0693 39 1 9.2844 0.5962 -0.3236 40 1 9.5115 0.3566 -2.0726 41 1 8.0466 1.1671 -1.4682 42 1 9.7874 -1.8469 -0.3490 43 1 8.5440 -2.9558 -0.9757 44 1 11.7232 -4.5809 -1.8782 45 1 4.7919 -0.6443 1.2363 46 1 6.0511 0.2347 2.1369 47 1 3.8368 1.4384 2.1005 48 1 5.1580 2.3843 1.3710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344099120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:53 Heat of formation + Delta-G solvation = -73.686752 kcal Electronic energy + Delta-G solvation = -26458.763469 eV Core-core repulsion = 22868.666492 eV Total energy + Delta-G solvation = -3590.096977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -39.38389 -37.35885 -36.72462 -36.13267 -33.49085 -33.36090 -32.03600 -31.11523 -29.47218 -27.40627 -24.89303 -24.45769 -24.25853 -23.40401 -22.04303 -20.50428 -19.21034 -18.56168 -17.73352 -16.58942 -16.47203 -16.44576 -15.18252 -14.99253 -14.88477 -14.50366 -14.44366 -14.40956 -13.93326 -13.56457 -13.48998 -13.27526 -12.92331 -12.82808 -12.53057 -12.36203 -12.28612 -12.01382 -11.94662 -11.90888 -11.78636 -11.74100 -11.28613 -11.19196 -10.98823 -10.86251 -10.84762 -10.65297 -10.62126 -10.35422 -10.10721 -10.00456 -9.63095 -9.21703 -9.02408 -8.42941 -7.21695 -6.03826 -4.04720 0.02644 2.41517 3.31992 3.36279 3.38985 3.61003 3.88317 4.24724 4.40099 4.45337 4.51638 4.69716 4.82227 4.87915 5.08257 5.11008 5.17885 5.21641 5.31945 5.35293 5.37421 5.45657 5.53603 5.62927 5.67087 5.74580 5.84624 5.89277 5.98188 6.04903 6.08478 6.16051 6.24008 6.27028 6.39709 6.48590 6.54624 6.65768 6.76956 6.81271 7.32370 7.35556 7.79984 8.11040 8.21562 8.56269 9.02961 9.59292 11.07010 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.002878 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.052606 B = 9727.347647 C = 9775.211299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.634 4.634 3 S 2.608 3.392 4 O -0.959 6.959 5 O -0.956 6.956 6 N -0.998 5.998 7 C 0.118 3.882 8 C -0.124 4.124 9 C -0.080 4.080 10 C 0.085 3.915 11 H 0.028 0.972 12 C -0.144 4.144 13 N -0.533 5.533 14 C 0.034 3.966 15 C 0.191 3.809 16 C -0.506 4.506 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.133 4.133 25 C 0.124 3.876 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.007 0.993 40 H 0.074 0.926 41 H 0.048 0.952 42 H -0.013 1.013 43 H 0.034 0.966 44 H 0.261 0.739 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 8.418 6.178 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.763 4.763 3 S 2.701 3.299 4 O -0.949 6.949 5 O -0.946 6.946 6 N -0.836 5.836 7 C -0.006 4.006 8 C -0.163 4.163 9 C -0.099 4.099 10 C -0.024 4.024 11 H 0.046 0.954 12 C -0.202 4.202 13 N -0.258 5.258 14 C -0.115 4.115 15 C 0.066 3.934 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.173 4.173 25 C -0.001 4.001 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.005 0.995 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.726 9.014 5.794 21.575 hybrid contribution 1.399 -0.957 -0.059 1.696 sum -17.327 8.057 5.735 19.951 Atomic orbital electron populations 1.21498 0.90737 1.05025 1.03256 1.30590 1.06939 1.26969 1.11838 1.05114 0.73055 0.77514 0.74174 1.93579 1.83399 1.72616 1.45322 1.93590 1.83295 1.72537 1.45181 1.57775 1.23765 1.89444 1.12588 1.21570 0.95717 0.99588 0.83773 1.21970 0.97970 0.96578 0.99774 1.21180 0.95852 0.98829 0.93991 1.21543 0.93887 0.94204 0.92751 0.95424 1.21928 0.99578 0.97905 1.00763 1.62168 1.22269 1.03857 1.37498 1.22268 0.97742 0.91438 1.00038 1.19764 0.88594 0.88614 0.96448 1.21138 1.18976 1.14908 0.99467 0.91956 1.24984 0.97094 0.95662 0.96891 1.69945 1.32880 1.18311 1.32809 0.86581 0.79399 0.77469 0.84055 1.20327 1.21428 1.20187 1.22067 0.98544 0.97713 0.98928 1.21468 0.95509 0.98954 0.84170 0.90038 0.91129 0.91041 0.84870 0.85074 0.91040 0.89490 0.91522 0.88853 0.90936 0.93511 0.91978 0.92057 0.97472 0.90770 0.93292 0.99523 0.94756 0.92920 0.91245 0.90856 0.89577 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.92 37.16 0.37 -0.59 16 2 C -0.63 -4.48 6.90 37.16 0.26 -4.22 16 3 S 2.61 26.49 5.41 -107.50 -0.58 25.90 16 4 O -0.96 -12.20 16.75 -57.54 -0.96 -13.16 16 5 O -0.96 -12.51 16.72 -57.54 -0.96 -13.47 16 6 N -1.00 -9.88 3.23 -113.31 -0.37 -10.25 16 7 C 0.12 1.22 6.31 -3.71 -0.02 1.20 16 8 C -0.12 -1.45 4.65 -26.61 -0.12 -1.58 16 9 C -0.08 -0.99 1.44 -90.57 -0.13 -1.12 16 10 C 0.09 1.37 1.86 -67.72 -0.13 1.25 16 11 H 0.03 0.48 8.13 -51.93 -0.42 0.06 16 12 C -0.14 -2.20 8.41 37.16 0.31 -1.89 16 13 N -0.53 -10.59 3.94 -236.33 -0.93 -11.52 16 14 C 0.03 0.62 8.53 60.06 0.51 1.13 16 15 C 0.19 4.77 4.58 -4.97 -0.02 4.75 16 16 C -0.51 -13.83 8.37 -34.44 -0.29 -14.12 16 17 H 0.06 1.68 7.18 -52.48 -0.38 1.30 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.13 -1.32 5.03 -26.61 -0.13 -1.45 16 25 C 0.12 1.15 6.33 -3.56 -0.02 1.13 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.13 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.85 7.10 -51.93 -0.37 0.48 16 33 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 34 H 0.09 1.27 7.26 -51.93 -0.38 0.89 16 35 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 36 H 0.05 0.58 6.52 -51.93 -0.34 0.24 16 37 H 0.06 0.93 6.41 -51.93 -0.33 0.60 16 38 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 39 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 40 H 0.07 1.50 6.64 -51.93 -0.34 1.16 16 41 H 0.05 0.75 6.15 -51.93 -0.32 0.43 16 42 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 43 H 0.03 0.91 6.04 -51.93 -0.31 0.60 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.72 7.12 -51.93 -0.37 0.35 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -33.02 371.88 -10.26 -43.28 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.26 Total: -3.00 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 0.48 Total: -14.08 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.56 Total: -47.39 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.93 Total: -26.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 26.49 SS G_CDS: -0.58 Total: 25.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.02 -10.26 -43.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344099120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.408 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds