Wall clock time and date at job start Tue Mar 31 2020 12:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47252 * 2 1 4 4 O 1.42100 * 110.54134 * 68.37404 * 3 2 1 5 5 O 1.42097 * 110.53900 * 291.62405 * 3 2 1 6 6 N 1.65596 * 104.44849 * 179.97438 * 3 2 1 7 7 C 1.46927 * 120.62817 * 90.00081 * 6 3 2 8 8 C 1.53201 * 108.89022 * 233.67115 * 7 6 3 9 9 C 1.53040 * 109.31239 * 305.29257 * 8 7 6 10 10 C 1.52997 * 109.45814 * 181.38264 * 9 8 7 11 11 H 1.09004 * 109.46908 * 182.39885 * 10 9 8 12 12 C 1.52999 * 109.47526 * 302.39971 * 10 9 8 13 13 N 1.46899 * 109.46755 * 62.40255 * 10 9 8 14 14 C 1.46896 * 111.00054 * 51.02362 * 13 10 9 15 15 C 1.46907 * 110.99695 * 174.97413 * 13 10 9 16 16 C 1.50702 * 109.46786 * 169.99816 * 15 13 10 17 17 H 1.08005 * 120.00217 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99934 * 179.97438 * 16 15 13 19 19 N 1.31520 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47198 * 60.00899 * 20 18 16 22 22 H 1.48507 * 109.47077 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47134 * 300.00162 * 20 18 16 24 24 C 1.53051 * 109.53588 * 61.36656 * 9 8 7 25 25 C 1.47208 * 120.81405 * 270.13411 * 6 3 2 26 26 H 1.08996 * 109.47359 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47387 * 300.00359 * 1 2 3 28 28 H 1.09002 * 109.47255 * 60.00133 * 1 2 3 29 29 H 1.09005 * 109.47092 * 239.99920 * 2 1 3 30 30 H 1.09003 * 109.46516 * 119.99939 * 2 1 3 31 31 H 1.09000 * 109.58264 * 113.81780 * 7 6 3 32 32 H 1.08991 * 109.58936 * 353.53220 * 7 6 3 33 33 H 1.08991 * 109.49576 * 65.24952 * 8 7 6 34 34 H 1.08998 * 109.49274 * 185.34578 * 8 7 6 35 35 H 1.08995 * 109.46664 * 301.35077 * 9 8 7 36 36 H 1.09002 * 109.47125 * 300.00302 * 12 10 9 37 37 H 1.09003 * 109.46577 * 60.00027 * 12 10 9 38 38 H 1.08997 * 109.47422 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47485 * 53.63120 * 14 13 10 40 40 H 1.09002 * 109.47236 * 173.62382 * 14 13 10 41 41 H 1.08996 * 109.47238 * 293.62708 * 14 13 10 42 42 H 1.08996 * 109.47226 * 289.99730 * 15 13 10 43 43 H 1.09003 * 109.46833 * 50.00338 * 15 13 10 44 44 H 0.96991 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.49412 * 58.58384 * 24 9 8 46 46 H 1.08999 * 109.49745 * 178.64703 * 24 9 8 47 47 H 1.08996 * 109.53212 * 6.54303 * 25 6 3 48 48 H 1.08996 * 109.67810 * 246.23311 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.5305 1.4995 -1.2633 8 6 5.4160 0.2494 -1.2520 9 6 6.3007 0.2670 -0.0034 10 6 7.2111 -0.9626 -0.0064 11 1 7.8110 -0.9727 0.9037 12 6 6.3562 -2.2300 -0.0677 13 7 8.0975 -0.9128 -1.1767 14 6 8.7789 0.3855 -1.2660 15 6 9.0675 -2.0157 -1.1498 16 6 9.7910 -2.0807 -2.4702 17 1 9.5542 -1.3731 -3.2511 18 6 10.7559 -3.0427 -2.6809 19 7 11.0446 -3.9040 -1.7298 20 14 11.6532 -3.1227 -4.3174 21 1 12.3661 -1.8418 -4.5542 22 1 12.6337 -4.2378 -4.2902 23 1 10.6727 -3.3528 -5.4087 24 6 5.4201 0.2464 1.2482 25 6 4.5347 1.4964 1.2653 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 5.1537 2.3878 -1.3662 32 1 3.8316 1.4447 -2.0978 33 1 4.7879 -0.6412 -1.2404 34 1 6.0441 0.2406 -2.1428 35 1 6.9108 1.1703 -0.0032 36 1 5.6984 -2.2670 0.8007 37 1 5.7563 -2.2199 -0.9777 38 1 7.0047 -3.1061 -0.0693 39 1 9.2844 0.5962 -0.3236 40 1 9.5115 0.3566 -2.0726 41 1 8.0466 1.1671 -1.4682 42 1 9.7874 -1.8469 -0.3490 43 1 8.5440 -2.9558 -0.9757 44 1 11.7232 -4.5809 -1.8782 45 1 4.7919 -0.6443 1.2363 46 1 6.0511 0.2347 2.1369 47 1 3.8368 1.4384 2.1005 48 1 5.1580 2.3843 1.3710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344099120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:52 Heat of formation + Delta-G solvation = -96.930879 kcal Electronic energy + Delta-G solvation = -26459.771410 eV Core-core repulsion = 22868.666492 eV Total energy + Delta-G solvation = -3591.104918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.46558 -38.22913 -38.00096 -37.01253 -35.07006 -33.99808 -33.62939 -31.95607 -30.67688 -29.28922 -26.28388 -25.81499 -24.92179 -24.26667 -23.50251 -21.74609 -20.18376 -19.52273 -18.65345 -18.45662 -17.35016 -17.25122 -16.76465 -16.41241 -15.94647 -15.70916 -15.48740 -15.22061 -15.13048 -14.69763 -14.39865 -14.25483 -14.09447 -13.89569 -13.63187 -13.38621 -13.34705 -13.21505 -13.18357 -12.98029 -12.84221 -12.73194 -12.67216 -12.47050 -12.38576 -12.34663 -12.14494 -12.06549 -11.72219 -11.55678 -11.35048 -11.24265 -11.09480 -10.91048 -10.55429 -9.86264 -8.90304 -8.17689 -6.26765 -0.71847 1.41954 1.44510 1.52239 1.65909 2.41738 2.89143 3.14795 3.15309 3.35946 3.62569 3.81083 3.85263 3.91003 4.04910 4.18322 4.31498 4.39035 4.49153 4.51906 4.57034 4.58056 4.59587 4.71847 4.77443 4.86681 4.88620 4.90361 4.96578 4.99740 5.04776 5.10056 5.11576 5.17919 5.20542 5.29477 5.37106 5.39652 5.42692 5.49935 5.66186 5.69565 5.75947 6.12608 6.43268 6.75887 6.90876 7.42709 8.92980 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.002878 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.052606 B = 9727.347647 C = 9775.211299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.614 4.614 3 S 2.610 3.390 4 O -0.989 6.989 5 O -0.992 6.992 6 N -0.999 5.999 7 C 0.122 3.878 8 C -0.119 4.119 9 C -0.072 4.072 10 C 0.082 3.918 11 H 0.013 0.987 12 C -0.139 4.139 13 N -0.535 5.535 14 C 0.038 3.962 15 C 0.207 3.793 16 C -0.520 4.520 17 H 0.063 0.937 18 C 0.001 3.999 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.268 1.268 24 C -0.127 4.127 25 C 0.123 3.877 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.004 0.996 40 H 0.051 0.949 41 H 0.083 0.917 42 H -0.049 1.049 43 H 0.014 0.986 44 H 0.263 0.737 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.612 8.589 5.946 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.747 4.747 3 S 2.707 3.293 4 O -0.980 6.980 5 O -0.982 6.982 6 N -0.837 5.837 7 C -0.003 4.003 8 C -0.158 4.158 9 C -0.091 4.091 10 C -0.026 4.026 11 H 0.031 0.969 12 C -0.196 4.196 13 N -0.259 5.259 14 C -0.110 4.110 15 C 0.080 3.920 16 C -0.559 4.559 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.577 5.577 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.167 4.167 25 C -0.001 4.001 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.101 0.899 42 H -0.032 1.032 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.262 9.245 5.566 22.956 hybrid contribution 1.817 -1.030 0.068 2.090 sum -18.445 8.215 5.635 20.963 Atomic orbital electron populations 1.21676 0.90276 1.06315 1.03563 1.30412 1.07284 1.23243 1.13766 1.04909 0.72821 0.78747 0.72789 1.93536 1.83745 1.74518 1.46175 1.93542 1.83738 1.74585 1.46349 1.57671 1.23681 1.89750 1.12551 1.21493 0.95675 0.98773 0.84315 1.21899 0.97816 0.97751 0.98359 1.21111 0.95648 0.96389 0.95975 1.21703 0.93714 0.96766 0.90449 0.96896 1.21893 0.99263 0.95802 1.02638 1.62107 1.21049 1.03011 1.39724 1.22248 0.98159 0.91541 0.99039 1.19398 0.88456 0.89724 0.94394 1.21488 1.19302 1.14822 1.00251 0.91874 1.25882 0.97977 0.95246 1.00593 1.70080 1.33607 1.19042 1.34967 0.85492 0.78187 0.77711 0.79550 1.19405 1.21109 1.19261 1.22033 0.98356 0.98692 0.97580 1.21533 0.95680 0.98607 0.84318 0.88168 0.90814 0.91063 0.83311 0.82889 0.91067 0.88856 0.90635 0.90809 0.91251 0.90031 0.91494 0.95529 0.97695 0.93050 0.89855 1.03178 0.96837 0.92845 0.89916 0.90178 0.88197 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.92 71.98 0.71 -0.92 16 2 C -0.61 -6.57 6.90 71.98 0.50 -6.07 16 3 S 2.61 48.07 5.41 -56.49 -0.31 47.76 16 4 O -0.99 -23.70 16.75 -127.65 -2.14 -25.84 16 5 O -0.99 -24.91 16.72 -127.65 -2.13 -27.05 16 6 N -1.00 -17.49 3.23 -512.40 -1.66 -19.14 16 7 C 0.12 2.29 6.31 86.37 0.54 2.84 16 8 C -0.12 -2.56 4.65 30.67 0.14 -2.41 16 9 C -0.07 -1.66 1.44 -10.76 -0.02 -1.68 16 10 C 0.08 2.61 1.86 44.91 0.08 2.69 16 11 H 0.01 0.46 8.13 -2.38 -0.02 0.44 16 12 C -0.14 -4.11 8.41 71.98 0.61 -3.50 16 13 N -0.53 -21.51 3.94 -901.60 -3.55 -25.06 16 14 C 0.04 1.41 8.53 127.69 1.09 2.50 16 15 C 0.21 10.75 4.58 85.56 0.39 11.14 16 16 C -0.52 -29.02 8.37 25.60 0.21 -28.81 16 17 H 0.06 3.44 7.18 -2.91 -0.02 3.42 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.94 -56.16 13.29 21.45 0.28 -55.88 16 20 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C -0.13 -2.16 5.03 30.67 0.15 -2.00 16 25 C 0.12 1.97 6.33 86.31 0.55 2.52 16 26 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.65 7.10 -2.39 -0.02 1.63 16 33 H 0.08 1.48 6.47 -2.39 -0.02 1.47 16 34 H 0.07 1.90 7.26 -2.39 -0.02 1.88 16 35 H 0.07 1.65 6.30 -2.39 -0.02 1.63 16 36 H 0.08 1.82 6.52 -2.39 -0.02 1.80 16 37 H 0.07 1.90 6.41 -2.39 -0.02 1.89 16 38 H 0.03 0.96 6.33 -2.39 -0.02 0.94 16 39 H 0.00 0.17 8.12 -2.38 -0.02 0.15 16 40 H 0.05 2.10 6.64 -2.39 -0.02 2.09 16 41 H 0.08 2.46 6.15 -2.39 -0.01 2.45 16 42 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 43 H 0.01 0.76 6.04 -2.39 -0.01 0.74 16 44 H 0.26 14.90 8.31 -92.72 -0.77 14.13 16 45 H 0.08 1.20 6.56 -2.39 -0.02 1.19 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 47 H 0.10 1.37 7.12 -2.39 -0.02 1.35 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.14 371.88 -1.12 -74.26 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.93 Total: 8.16 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 5.43 Total: -23.21 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.92 Total: -100.08 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -4.27 Total: -52.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 48.07 SS G_CDS: -0.31 Total: 47.76 kcal Total: -73.14 -1.12 -74.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344099120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.674 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds