Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.52997 * 109.47212 * 275.00347 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47859 * 179.97438 * 5 4 3 7 7 C 1.48533 * 110.99670 * 52.60024 * 6 5 4 8 8 C 1.54936 * 103.22827 * 159.72645 * 7 6 5 9 9 C 1.54602 * 102.91755 * 322.58844 * 8 7 6 10 10 C 1.47895 * 111.00585 * 169.99973 * 6 5 4 11 11 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 12 12 O 1.42101 * 104.27728 * 26.06466 * 11 2 1 13 13 O 1.42101 * 104.28108 * 153.92463 * 11 2 1 14 14 C 1.81403 * 104.45087 * 269.99629 * 11 2 1 15 15 C 1.52992 * 109.47390 * 179.97438 * 14 11 2 16 16 C 1.53004 * 109.47498 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47513 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99918 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47407 * 89.99996 * 21 19 17 23 23 H 1.48502 * 109.46602 * 209.99560 * 21 19 17 24 24 H 1.48491 * 109.47243 * 329.99060 * 21 19 17 25 25 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 26 26 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 27 27 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 28 28 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 29 29 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 32 32 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 34 34 H 1.09002 * 110.67270 * 278.16471 * 7 6 5 35 35 H 1.08998 * 110.66667 * 41.29259 * 7 6 5 36 36 H 1.09002 * 110.72666 * 204.23420 * 8 7 6 37 37 H 1.08998 * 110.72369 * 80.94172 * 8 7 6 38 38 H 1.09001 * 110.30688 * 263.03605 * 9 8 7 39 39 H 1.08996 * 110.30747 * 140.87557 * 9 8 7 40 40 H 1.08994 * 109.91810 * 333.51090 * 10 6 5 41 41 H 1.08999 * 109.91451 * 94.60787 * 10 6 5 42 42 H 1.09000 * 109.47162 * 299.99966 * 14 11 2 43 43 H 1.09000 * 109.47109 * 59.99791 * 14 11 2 44 44 H 1.09000 * 109.47252 * 300.00292 * 15 14 11 45 45 H 1.09007 * 109.47178 * 59.99755 * 15 14 11 46 46 H 1.09000 * 109.47245 * 300.00465 * 16 15 14 47 47 H 1.09005 * 109.46462 * 60.00362 * 16 15 14 48 48 H 0.97005 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4370 5 6 3.1080 3.0986 -1.4370 6 7 3.2488 3.5829 -2.8167 7 6 1.9313 3.6310 -3.5010 8 6 2.1758 4.6155 -4.6721 9 6 3.1130 5.6729 -4.0447 10 6 3.7672 4.9677 -2.8422 11 16 2.2930 -1.4341 -0.0006 12 8 1.3969 -2.3559 -0.6061 13 8 3.5395 -1.1188 -0.6058 14 6 2.5194 -1.8268 1.7558 15 6 3.2810 -3.1470 1.8892 16 6 3.4726 -3.4780 3.3707 17 6 4.2232 -4.7781 3.5020 18 1 4.5324 -5.3149 2.6173 19 6 4.5144 -5.2828 4.7516 20 7 4.1375 -4.6293 5.8289 21 14 5.4455 -6.8940 4.9144 22 1 6.9045 -6.6204 4.9580 23 1 5.0329 -7.5798 6.1652 24 1 5.1393 -7.7625 3.7496 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6501 2.0043 0.5895 29 1 3.1858 1.1177 0.4342 30 1 2.8909 1.0378 -2.0265 31 1 1.3553 1.9244 -1.8713 32 1 2.5603 3.8340 -0.8476 33 1 4.0963 2.9480 -1.0026 34 1 1.6571 2.6456 -3.8776 35 1 1.1631 4.0148 -2.8298 36 1 1.2398 5.0721 -4.9939 37 1 2.6662 4.1107 -5.5043 38 1 2.5386 6.5367 -3.7102 39 1 3.8733 5.9786 -4.7635 40 1 3.4988 5.4817 -1.9193 41 1 4.8508 4.9564 -2.9591 42 1 3.0867 -1.0296 2.2362 43 1 1.5453 -1.9196 2.2359 44 1 2.7134 -3.9440 1.4089 45 1 4.2552 -3.0547 1.4090 46 1 4.0404 -2.6809 3.8506 47 1 2.4985 -3.5703 3.8511 48 1 4.3427 -4.9843 6.7080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350258166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = -85.114838 kcal Electronic energy + Delta-G solvation = -24875.695871 eV Core-core repulsion = 21285.103335 eV Total energy + Delta-G solvation = -3590.592536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34971 -37.05657 -36.82879 -35.68547 -34.66071 -33.64712 -32.18264 -30.36541 -29.18142 -27.81109 -26.78668 -24.53590 -23.61704 -22.44831 -21.13685 -20.62011 -20.54986 -18.72944 -17.54926 -16.67330 -16.59990 -16.35177 -15.89870 -15.73886 -15.22990 -14.79779 -14.52166 -14.42311 -14.11640 -14.00541 -13.43429 -13.20016 -12.85634 -12.66623 -12.57748 -12.30976 -12.27692 -11.91860 -11.81602 -11.77240 -11.74258 -11.70972 -11.54965 -11.45753 -11.27615 -11.13844 -10.94028 -10.92011 -10.84775 -10.74696 -10.41056 -9.95072 -9.52923 -9.23835 -8.94425 -8.70297 -8.40827 -6.05772 -4.08774 0.44327 2.73712 3.30691 3.36696 3.40979 3.66449 4.03070 4.26264 4.33265 4.35987 4.42262 4.48946 4.60599 4.77691 4.91260 4.96728 5.07151 5.13378 5.15063 5.17629 5.22298 5.30613 5.32919 5.35272 5.39007 5.43714 5.45960 5.48023 5.63183 5.64846 5.66612 5.76302 5.83218 5.89650 6.02348 6.09764 6.25970 6.45252 6.47496 6.58902 6.76409 6.87303 7.56736 7.66629 7.92264 8.32841 8.97438 9.55923 11.05423 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002230 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.682720 B =12555.625503 C =12936.007022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.008 6.008 3 C 0.127 3.873 4 C -0.141 4.141 5 C 0.049 3.951 6 N -0.517 5.517 7 C 0.033 3.967 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.034 3.966 11 S 2.596 3.404 12 O -0.960 6.960 13 O -0.955 6.955 14 C -0.610 4.610 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 21.757 -15.673 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.844 5.844 3 C 0.001 3.999 4 C -0.180 4.180 5 C -0.079 4.079 6 N -0.242 5.242 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.170 4.170 10 C -0.094 4.094 11 S 2.692 3.308 12 O -0.950 6.950 13 O -0.945 6.945 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.954 20.949 -16.521 27.571 hybrid contribution -0.205 -0.050 1.461 1.476 sum -7.159 20.899 -15.060 26.736 Atomic orbital electron populations 1.21423 0.78601 1.02862 1.02068 1.57629 1.15041 1.21503 1.90253 1.21206 0.96739 0.85144 0.96795 1.22102 1.00762 0.97262 0.97910 1.22252 1.00959 0.95757 0.88962 1.64793 1.22635 1.20916 1.15815 1.23260 0.90786 1.00126 0.95343 1.22498 0.99363 0.96358 0.98134 1.22399 0.99043 0.98044 0.97482 1.22881 1.00708 0.88303 0.97471 1.05597 0.73815 0.72769 0.78571 1.93563 1.64771 1.62205 1.74460 1.93574 1.43867 1.82738 1.74339 1.30591 1.10532 1.09449 1.23550 1.21501 0.98195 0.90617 1.04222 1.19064 0.97386 0.96782 0.87539 1.21257 1.36193 1.06577 0.92390 0.92350 1.25026 0.95926 0.97585 0.95898 1.69961 1.46700 1.39053 0.97734 0.86544 0.80089 0.83532 0.77582 1.20557 1.21182 1.19737 0.92651 0.90930 0.91272 0.90608 0.89788 0.89783 0.91578 0.94635 0.90030 0.89829 0.93780 0.91156 0.90657 0.91639 0.90992 0.93797 0.90245 0.85525 0.85570 0.91619 0.91563 0.96136 0.96146 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 10.24 59.84 0.61 1.49 16 2 N -1.01 -11.34 3.12 -121.76 -0.38 -11.72 16 3 C 0.13 1.22 5.28 -4.04 -0.02 1.20 16 4 C -0.14 -1.40 5.20 -26.74 -0.14 -1.54 16 5 C 0.05 0.44 5.03 -3.83 -0.02 0.42 16 6 N -0.52 -4.86 5.40 -230.47 -1.24 -6.11 16 7 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 8 C -0.13 -0.84 7.06 -24.87 -0.18 -1.02 16 9 C -0.13 -0.83 6.93 -25.37 -0.18 -1.01 16 10 C 0.03 0.26 6.69 -2.76 -0.02 0.25 16 11 S 2.60 39.16 5.32 -107.50 -0.57 38.59 16 12 O -0.96 -17.12 17.09 -57.54 -0.98 -18.11 16 13 O -0.95 -16.77 16.75 -57.54 -0.96 -17.73 16 14 C -0.61 -9.51 6.18 37.15 0.23 -9.28 16 15 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 27 H 0.07 0.45 7.94 -51.93 -0.41 0.04 16 28 H 0.08 0.54 7.96 -51.93 -0.41 0.12 16 29 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 30 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 31 H 0.07 0.60 6.79 -51.93 -0.35 0.24 16 32 H 0.04 0.27 7.81 -51.93 -0.41 -0.13 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 35 H 0.04 0.33 8.00 -51.93 -0.42 -0.09 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.31 7.57 -51.93 -0.39 -0.08 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 43 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.63 393.16 -11.94 -46.57 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -9.04 Total: -3.58 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -0.40 Total: -24.59 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.89 Total: -43.74 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.95 Total: -35.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.16 SS G_CDS: -0.57 Total: 38.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.63 -11.94 -46.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350258166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.541 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds