Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.52997 * 109.47212 * 275.00347 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47859 * 179.97438 * 5 4 3 7 7 C 1.48533 * 110.99670 * 52.60024 * 6 5 4 8 8 C 1.54936 * 103.22827 * 159.72645 * 7 6 5 9 9 C 1.54602 * 102.91755 * 322.58844 * 8 7 6 10 10 C 1.47895 * 111.00585 * 169.99973 * 6 5 4 11 11 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 12 12 O 1.42101 * 104.27728 * 26.06466 * 11 2 1 13 13 O 1.42101 * 104.28108 * 153.92463 * 11 2 1 14 14 C 1.81403 * 104.45087 * 269.99629 * 11 2 1 15 15 C 1.52992 * 109.47390 * 179.97438 * 14 11 2 16 16 C 1.53004 * 109.47498 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47513 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99918 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47407 * 89.99996 * 21 19 17 23 23 H 1.48502 * 109.46602 * 209.99560 * 21 19 17 24 24 H 1.48491 * 109.47243 * 329.99060 * 21 19 17 25 25 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 26 26 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 27 27 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 28 28 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 29 29 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 32 32 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 34 34 H 1.09002 * 110.67270 * 278.16471 * 7 6 5 35 35 H 1.08998 * 110.66667 * 41.29259 * 7 6 5 36 36 H 1.09002 * 110.72666 * 204.23420 * 8 7 6 37 37 H 1.08998 * 110.72369 * 80.94172 * 8 7 6 38 38 H 1.09001 * 110.30688 * 263.03605 * 9 8 7 39 39 H 1.08996 * 110.30747 * 140.87557 * 9 8 7 40 40 H 1.08994 * 109.91810 * 333.51090 * 10 6 5 41 41 H 1.08999 * 109.91451 * 94.60787 * 10 6 5 42 42 H 1.09000 * 109.47162 * 299.99966 * 14 11 2 43 43 H 1.09000 * 109.47109 * 59.99791 * 14 11 2 44 44 H 1.09000 * 109.47252 * 300.00292 * 15 14 11 45 45 H 1.09007 * 109.47178 * 59.99755 * 15 14 11 46 46 H 1.09000 * 109.47245 * 300.00465 * 16 15 14 47 47 H 1.09005 * 109.46462 * 60.00362 * 16 15 14 48 48 H 0.97005 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4370 5 6 3.1080 3.0986 -1.4370 6 7 3.2488 3.5829 -2.8167 7 6 1.9313 3.6310 -3.5010 8 6 2.1758 4.6155 -4.6721 9 6 3.1130 5.6729 -4.0447 10 6 3.7672 4.9677 -2.8422 11 16 2.2930 -1.4341 -0.0006 12 8 1.3969 -2.3559 -0.6061 13 8 3.5395 -1.1188 -0.6058 14 6 2.5194 -1.8268 1.7558 15 6 3.2810 -3.1470 1.8892 16 6 3.4726 -3.4780 3.3707 17 6 4.2232 -4.7781 3.5020 18 1 4.5324 -5.3149 2.6173 19 6 4.5144 -5.2828 4.7516 20 7 4.1375 -4.6293 5.8289 21 14 5.4455 -6.8940 4.9144 22 1 6.9045 -6.6204 4.9580 23 1 5.0329 -7.5798 6.1652 24 1 5.1393 -7.7625 3.7496 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6501 2.0043 0.5895 29 1 3.1858 1.1177 0.4342 30 1 2.8909 1.0378 -2.0265 31 1 1.3553 1.9244 -1.8713 32 1 2.5603 3.8340 -0.8476 33 1 4.0963 2.9480 -1.0026 34 1 1.6571 2.6456 -3.8776 35 1 1.1631 4.0148 -2.8298 36 1 1.2398 5.0721 -4.9939 37 1 2.6662 4.1107 -5.5043 38 1 2.5386 6.5367 -3.7102 39 1 3.8733 5.9786 -4.7635 40 1 3.4988 5.4817 -1.9193 41 1 4.8508 4.9564 -2.9591 42 1 3.0867 -1.0296 2.2362 43 1 1.5453 -1.9196 2.2359 44 1 2.7134 -3.9440 1.4089 45 1 4.2552 -3.0547 1.4090 46 1 4.0404 -2.6809 3.8506 47 1 2.4985 -3.5703 3.8511 48 1 4.3427 -4.9843 6.7080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350258166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = -109.451143 kcal Electronic energy + Delta-G solvation = -24876.751172 eV Core-core repulsion = 21285.103335 eV Total energy + Delta-G solvation = -3591.647837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.96808 -38.26959 -37.75951 -36.99962 -36.47571 -34.33542 -34.17381 -31.04350 -29.75259 -29.66638 -27.53049 -25.72977 -25.11212 -23.17266 -22.32558 -21.69322 -21.26873 -19.87623 -18.69266 -18.53828 -17.55487 -17.26647 -16.92433 -16.76376 -16.50412 -16.10522 -15.85197 -15.32166 -15.13913 -14.78506 -14.51550 -14.18778 -14.03582 -13.86324 -13.63837 -13.53906 -13.36167 -13.20467 -13.16704 -13.00220 -12.82320 -12.75833 -12.63888 -12.53907 -12.34686 -12.20721 -12.17505 -12.03279 -11.92145 -11.77179 -11.55483 -11.40088 -11.38182 -11.09866 -10.58638 -9.98275 -9.33355 -8.23782 -6.34870 -0.77781 1.39584 1.40395 1.51847 1.67962 2.39068 2.80283 3.03786 3.09537 3.15850 3.59542 3.73640 3.80038 3.84302 3.89500 4.07420 4.08606 4.27532 4.35072 4.37177 4.38087 4.49745 4.60158 4.63324 4.67487 4.71242 4.72539 4.78181 4.88846 4.92691 4.96150 4.98458 5.00240 5.04864 5.08029 5.17981 5.27395 5.28290 5.33936 5.43639 5.60488 5.64600 5.77891 5.98920 6.13450 6.18417 6.80394 7.34385 8.87620 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002230 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.682720 B =12555.625503 C =12936.007022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.999 5.999 3 C 0.120 3.880 4 C -0.136 4.136 5 C 0.052 3.948 6 N -0.542 5.542 7 C 0.031 3.969 8 C -0.124 4.124 9 C -0.128 4.128 10 C 0.031 3.969 11 S 2.618 3.382 12 O -0.989 6.989 13 O -0.983 6.983 14 C -0.609 4.609 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.059 0.941 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.003 0.997 47 H 0.003 0.997 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 23.066 -15.863 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.838 5.838 3 C -0.006 4.006 4 C -0.175 4.175 5 C -0.076 4.076 6 N -0.267 5.267 7 C -0.096 4.096 8 C -0.163 4.163 9 C -0.166 4.166 10 C -0.096 4.096 11 S 2.714 3.286 12 O -0.979 6.979 13 O -0.973 6.973 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.190 1.190 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.714 22.253 -16.716 28.882 hybrid contribution -0.006 -0.381 1.502 1.550 sum -7.719 21.872 -15.214 27.739 Atomic orbital electron populations 1.21718 0.76823 1.04579 1.02851 1.57304 1.16029 1.20596 1.89837 1.21475 0.97154 0.84863 0.97080 1.22029 1.00888 0.96922 0.97694 1.22202 1.00647 0.95580 0.89220 1.64758 1.23632 1.22118 1.16172 1.23270 0.90473 1.00007 0.95884 1.22506 1.00144 0.96188 0.97414 1.22402 0.99124 0.98131 0.96989 1.22925 1.00500 0.87713 0.98485 1.04684 0.73055 0.73148 0.77692 1.93519 1.65381 1.64049 1.74962 1.93536 1.45626 1.83359 1.74801 1.30543 1.11065 1.07288 1.25040 1.21314 0.99133 0.93439 1.00703 1.18960 0.95744 0.95378 0.90598 1.21735 1.36722 1.07908 0.92756 0.92239 1.25945 0.96801 1.01319 0.95555 1.70070 1.47730 1.40801 0.98272 0.85464 0.78828 0.79042 0.77855 1.19684 1.20449 1.18967 0.92433 0.90979 0.87849 0.86951 0.90105 0.93179 0.90616 0.92738 0.90824 0.90905 0.92864 0.89621 0.91463 0.90353 0.90581 0.93044 0.90819 0.83741 0.83786 0.91731 0.91661 0.97833 0.97833 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 127.77 1.31 2.63 16 2 N -1.00 -20.67 3.12 -539.14 -1.68 -22.35 16 3 C 0.12 2.04 5.28 86.38 0.46 2.49 16 4 C -0.14 -2.54 5.20 30.59 0.16 -2.38 16 5 C 0.05 0.86 5.03 86.30 0.43 1.30 16 6 N -0.54 -9.72 5.40 -883.07 -4.76 -14.48 16 7 C 0.03 0.46 5.10 86.65 0.44 0.90 16 8 C -0.12 -1.49 7.06 31.80 0.22 -1.27 16 9 C -0.13 -1.40 6.93 31.47 0.22 -1.19 16 10 C 0.03 0.44 6.69 86.45 0.58 1.02 16 11 S 2.62 77.65 5.32 -56.49 -0.30 77.35 16 12 O -0.99 -35.06 17.09 -127.65 -2.18 -37.24 16 13 O -0.98 -34.73 16.75 -127.65 -2.14 -36.86 16 14 C -0.61 -18.56 6.18 71.98 0.44 -18.12 16 15 C -0.11 -4.42 5.16 30.59 0.16 -4.26 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 21 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.15 7.79 -2.39 -0.02 1.13 16 27 H 0.10 0.93 7.94 -2.39 -0.02 0.91 16 28 H 0.11 1.14 7.96 -2.39 -0.02 1.13 16 29 H 0.08 1.45 7.61 -2.39 -0.02 1.43 16 30 H 0.05 1.28 7.90 -2.39 -0.02 1.26 16 31 H 0.08 1.24 6.79 -2.39 -0.02 1.23 16 32 H 0.05 0.69 7.81 -2.39 -0.02 0.67 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 35 H 0.05 0.68 8.00 -2.39 -0.02 0.66 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.63 7.57 -2.39 -0.02 0.62 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 44 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.06 2.66 8.14 -2.38 -0.02 2.65 16 46 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 48 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -75.25 393.16 -2.60 -77.84 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.89 Total: 12.86 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 5.27 Total: -48.06 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -6.16 Total: -92.37 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -4.32 Total: -74.11 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 77.65 SS G_CDS: -0.30 Total: 77.35 kcal Total: -75.25 -2.60 -77.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350258166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.606 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds