Wall clock time and date at job start Tue Mar 31 2020 12:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81401 * 109.46800 * 2 1 4 4 O 1.42106 * 110.54284 * 68.37744 * 3 2 1 5 5 O 1.42098 * 110.54464 * 291.62597 * 3 2 1 6 6 N 1.65597 * 104.44904 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00046 * 270.00010 * 6 3 2 8 8 C 1.46497 * 120.00185 * 90.00117 * 6 3 2 9 9 C 1.53119 * 109.52580 * 120.00032 * 8 6 3 10 10 C 1.53035 * 109.28044 * 177.56335 * 9 8 6 11 11 N 1.46853 * 109.51956 * 300.81712 * 10 9 8 12 12 C 1.46900 * 110.99871 * 185.83903 * 11 10 9 13 13 H 1.08995 * 109.47198 * 188.74775 * 12 11 10 14 14 C 1.53002 * 109.47245 * 308.74712 * 12 11 10 15 15 C 1.52998 * 109.47024 * 68.74577 * 12 11 10 16 16 C 1.50706 * 109.47068 * 63.54526 * 15 12 11 17 17 H 1.08000 * 120.00082 * 5.06133 * 16 15 12 18 18 C 1.37878 * 119.99781 * 185.06828 * 16 15 12 19 19 N 1.31517 * 119.99639 * 179.97438 * 18 16 15 20 20 Si 1.86789 * 120.00257 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47532 * 90.00136 * 20 18 16 22 22 H 1.48500 * 109.47135 * 210.00033 * 20 18 16 23 23 H 1.48497 * 109.47452 * 329.99881 * 20 18 16 24 24 C 1.46848 * 111.19599 * 61.74467 * 11 10 9 25 25 C 1.53032 * 109.52358 * 298.25518 * 24 11 10 26 26 H 1.08996 * 109.47406 * 59.99998 * 1 2 3 27 27 H 1.09005 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46977 * 299.99822 * 1 2 3 29 29 H 1.08996 * 109.46977 * 240.00178 * 2 1 3 30 30 H 1.08996 * 109.47406 * 120.00002 * 2 1 3 31 31 H 1.08994 * 109.47267 * 270.00191 * 7 6 3 32 32 H 1.08999 * 109.46967 * 30.00189 * 7 6 3 33 33 H 1.08993 * 109.46986 * 149.99817 * 7 6 3 34 34 H 1.09003 * 109.57601 * 359.83945 * 8 6 3 35 35 H 1.08997 * 109.50357 * 57.61621 * 9 8 6 36 36 H 1.09006 * 109.50008 * 297.50093 * 9 8 6 37 37 H 1.08996 * 109.46399 * 60.83412 * 10 9 8 38 38 H 1.08997 * 109.46282 * 180.80624 * 10 9 8 39 39 H 1.08998 * 109.47107 * 299.99686 * 14 12 11 40 40 H 1.09004 * 109.47154 * 60.00073 * 14 12 11 41 41 H 1.08999 * 109.47086 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47539 * 183.54197 * 15 12 11 43 43 H 1.09000 * 109.47328 * 303.54275 * 15 12 11 44 44 H 0.96999 * 119.99799 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.45832 * 178.23825 * 24 11 10 46 46 H 1.08997 * 109.46367 * 58.27492 * 24 11 10 47 47 H 1.08999 * 109.50546 * 299.24148 * 25 24 11 48 48 H 1.09008 * 109.50242 * 179.12244 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5134 1.5016 -1.2697 9 6 5.5001 2.6695 -1.3523 10 6 6.3013 2.5632 -2.6518 11 7 7.0244 1.2853 -2.6793 12 6 7.9125 1.2079 -3.8469 13 1 8.3165 0.1991 -3.9299 14 6 7.1219 1.5464 -5.1123 15 6 9.0609 2.2052 -3.6811 16 6 9.8914 1.8205 -2.4838 17 1 9.6765 0.9075 -1.9483 18 6 10.9254 2.6342 -2.0718 19 7 11.6498 2.2987 -1.0266 20 14 11.2974 4.2130 -2.9981 21 1 10.5147 5.3289 -2.4089 22 1 12.7473 4.5172 -2.8955 23 1 10.9262 4.0482 -4.4264 24 6 6.0951 0.1487 -2.6487 25 6 5.2877 0.1830 -1.3492 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.7855 2.5089 1.5824 32 1 3.8830 1.0407 2.0275 33 1 5.4182 0.9060 1.1369 34 1 3.8087 1.5607 -2.0992 35 1 6.1802 2.6322 -0.5013 36 1 4.9512 3.6112 -1.3393 37 1 5.6220 2.6144 -3.5026 38 1 7.0148 3.3854 -2.7069 39 1 6.3038 0.8359 -5.2305 40 1 6.7179 2.5554 -5.0294 41 1 7.7810 1.4894 -5.9786 42 1 9.6847 2.1930 -4.5748 43 1 8.6548 3.2061 -3.5351 44 1 12.3775 2.8709 -0.7370 45 1 6.6589 -0.7828 -2.7017 46 1 5.4167 0.2112 -3.4996 47 1 5.9645 0.1066 -0.4981 48 1 4.5871 -0.6520 -1.3339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351490254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:31 Heat of formation + Delta-G solvation = -68.407671 kcal Electronic energy + Delta-G solvation = -26653.561087 eV Core-core repulsion = 23063.693028 eV Total energy + Delta-G solvation = -3589.868059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.38257 -37.30701 -36.73793 -36.07797 -33.53623 -33.47746 -32.07278 -30.63293 -29.38274 -27.76265 -26.54703 -24.48629 -23.57713 -22.99258 -22.22013 -19.85078 -18.97382 -18.72622 -17.85995 -16.72881 -16.56315 -16.51093 -15.69672 -15.11777 -14.67275 -14.38764 -14.28338 -14.04530 -13.91064 -13.64755 -13.48194 -13.18319 -12.87679 -12.71674 -12.67069 -12.45539 -12.28186 -12.23212 -12.07343 -11.96483 -11.92290 -11.75636 -11.54399 -11.37288 -11.01495 -10.94683 -10.86461 -10.59871 -10.56488 -10.22626 -10.00407 -9.70171 -9.53280 -9.05219 -8.96650 -8.41429 -7.51867 -5.90824 -3.84306 0.03468 2.44651 3.36015 3.44099 3.46282 3.63881 3.88578 4.22255 4.42511 4.44322 4.54761 4.55517 4.79538 4.96341 5.02613 5.16253 5.20824 5.30779 5.42613 5.43281 5.46332 5.49964 5.58185 5.60406 5.65155 5.72867 5.79220 5.82017 5.86749 5.90345 5.96176 6.07547 6.17704 6.33831 6.37317 6.44893 6.51630 6.58871 6.64535 6.79565 7.15197 7.30881 7.78827 7.82830 7.96747 8.71840 9.20808 9.72600 11.23260 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.003437 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.825473 B = 8145.818714 C = 8582.062684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.605 3.395 4 O -0.955 6.955 5 O -0.954 6.954 6 N -0.996 5.996 7 C 0.092 3.908 8 C 0.147 3.853 9 C -0.120 4.120 10 C 0.058 3.942 11 N -0.507 5.507 12 C 0.097 3.903 13 H 0.074 0.926 14 C -0.187 4.187 15 C -0.006 4.006 16 C -0.487 4.487 17 H 0.077 0.923 18 C 0.062 3.938 19 N -0.908 5.908 20 Si 0.872 3.128 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.056 3.944 25 C -0.126 4.126 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.259 0.741 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.083 0.917 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 -6.076 0.754 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.698 3.302 4 O -0.946 6.946 5 O -0.944 6.944 6 N -0.833 5.833 7 C -0.053 4.053 8 C 0.042 3.958 9 C -0.159 4.159 10 C -0.071 4.071 11 N -0.231 5.231 12 C -0.011 4.011 13 H 0.093 0.907 14 C -0.246 4.246 15 C -0.043 4.043 16 C -0.525 4.525 17 H 0.095 0.905 18 C -0.138 4.138 19 N -0.549 5.549 20 Si 0.700 3.300 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.194 1.194 24 C -0.073 4.073 25 C -0.165 4.165 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.101 0.899 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.870 -5.242 1.318 21.558 hybrid contribution 0.015 0.149 -1.085 1.095 sum -20.854 -5.093 0.233 21.469 Atomic orbital electron populations 1.21497 0.90707 1.04946 1.03371 1.30595 1.07004 1.27240 1.11590 1.05242 0.73183 0.77479 0.74285 1.93592 1.83413 1.72340 1.45218 1.93592 1.83318 1.72339 1.45175 1.57483 1.24043 1.89506 1.12236 1.21474 0.97972 1.02927 0.82973 1.21081 0.94395 0.96525 0.83846 1.21891 0.97256 0.96867 0.99922 1.22060 0.96073 0.93917 0.95066 1.62009 1.18588 1.00510 1.41968 1.21674 0.93025 1.01220 0.85205 0.90738 1.22570 1.00528 1.01133 1.00413 1.19669 0.92923 0.94015 0.97707 1.21005 1.11928 1.08817 1.10765 0.90454 1.24995 0.96285 0.97582 0.94916 1.69908 1.20909 1.38379 1.25689 0.86912 0.77229 0.84829 0.81007 1.20574 1.21719 1.19391 1.22026 0.94289 0.95743 0.95237 1.21989 0.98752 0.95840 0.99954 0.91015 0.90105 0.91046 0.85079 0.85120 0.92036 0.91563 0.90041 0.88808 0.89944 0.91653 0.95385 0.89586 0.93798 0.92715 0.92548 0.96632 0.96888 0.93112 0.90686 0.95634 0.89853 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.92 37.16 0.37 -0.58 16 2 C -0.64 -4.39 6.90 37.16 0.26 -4.13 16 3 S 2.60 28.21 5.37 -107.50 -0.58 27.64 16 4 O -0.96 -12.94 17.09 -57.54 -0.98 -13.92 16 5 O -0.95 -13.27 16.57 -57.54 -0.95 -14.22 16 6 N -1.00 -10.91 3.01 -114.48 -0.34 -11.26 16 7 C 0.09 0.92 9.22 59.85 0.55 1.47 16 8 C 0.15 1.81 2.52 -67.81 -0.17 1.64 16 9 C -0.12 -1.76 5.41 -26.65 -0.14 -1.90 16 10 C 0.06 0.94 4.47 -3.83 -0.02 0.93 16 11 N -0.51 -8.86 4.26 -226.69 -0.97 -9.83 16 12 C 0.10 1.81 2.26 -67.71 -0.15 1.65 16 13 H 0.07 1.43 7.93 -51.93 -0.41 1.01 16 14 C -0.19 -2.91 8.40 37.16 0.31 -2.59 16 15 C -0.01 -0.13 3.47 -27.88 -0.10 -0.23 16 16 C -0.49 -13.41 9.35 -34.44 -0.32 -13.73 16 17 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.06 1.77 5.47 -17.82 -0.10 1.68 16 19 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 20 Si 0.87 21.70 27.37 -169.99 -4.65 17.05 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 24 C 0.06 0.78 5.18 -3.84 -0.02 0.76 16 25 C -0.13 -1.49 5.40 -26.65 -0.14 -1.63 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 33 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 34 H 0.09 1.14 6.88 -51.93 -0.36 0.79 16 35 H 0.08 1.31 7.60 -51.93 -0.39 0.91 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.43 6.57 -51.93 -0.34 0.08 16 38 H 0.09 1.59 6.28 -51.93 -0.33 1.26 16 39 H 0.04 0.60 6.93 -51.93 -0.36 0.24 16 40 H 0.05 0.84 6.45 -51.93 -0.33 0.51 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.02 0.36 7.55 -51.93 -0.39 -0.03 16 43 H 0.01 0.30 5.54 -51.93 -0.29 0.01 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 46 H 0.03 0.33 6.98 -51.93 -0.36 -0.03 16 47 H 0.08 1.07 6.57 -51.93 -0.34 0.73 16 48 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -34.23 373.49 -10.19 -44.42 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.44 Total: -1.72 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 0.32 Total: -16.66 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.54 Total: -48.21 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.94 Total: -28.14 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.65 Total: 17.05 kcal Atomic # 16 Polarization: 28.21 SS G_CDS: -0.58 Total: 27.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.23 -10.19 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351490254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.989 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds