Wall clock time and date at job start Tue Mar 31 2020 12:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81401 * 109.46800 * 2 1 4 4 O 1.42106 * 110.54284 * 68.37744 * 3 2 1 5 5 O 1.42098 * 110.54464 * 291.62597 * 3 2 1 6 6 N 1.65597 * 104.44904 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00046 * 270.00010 * 6 3 2 8 8 C 1.46497 * 120.00185 * 90.00117 * 6 3 2 9 9 C 1.53119 * 109.52580 * 120.00032 * 8 6 3 10 10 C 1.53035 * 109.28044 * 177.56335 * 9 8 6 11 11 N 1.46853 * 109.51956 * 300.81712 * 10 9 8 12 12 C 1.46900 * 110.99871 * 185.83903 * 11 10 9 13 13 H 1.08995 * 109.47198 * 188.74775 * 12 11 10 14 14 C 1.53002 * 109.47245 * 308.74712 * 12 11 10 15 15 C 1.52998 * 109.47024 * 68.74577 * 12 11 10 16 16 C 1.50706 * 109.47068 * 63.54526 * 15 12 11 17 17 H 1.08000 * 120.00082 * 5.06133 * 16 15 12 18 18 C 1.37878 * 119.99781 * 185.06828 * 16 15 12 19 19 N 1.31517 * 119.99639 * 179.97438 * 18 16 15 20 20 Si 1.86789 * 120.00257 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47532 * 90.00136 * 20 18 16 22 22 H 1.48500 * 109.47135 * 210.00033 * 20 18 16 23 23 H 1.48497 * 109.47452 * 329.99881 * 20 18 16 24 24 C 1.46848 * 111.19599 * 61.74467 * 11 10 9 25 25 C 1.53032 * 109.52358 * 298.25518 * 24 11 10 26 26 H 1.08996 * 109.47406 * 59.99998 * 1 2 3 27 27 H 1.09005 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46977 * 299.99822 * 1 2 3 29 29 H 1.08996 * 109.46977 * 240.00178 * 2 1 3 30 30 H 1.08996 * 109.47406 * 120.00002 * 2 1 3 31 31 H 1.08994 * 109.47267 * 270.00191 * 7 6 3 32 32 H 1.08999 * 109.46967 * 30.00189 * 7 6 3 33 33 H 1.08993 * 109.46986 * 149.99817 * 7 6 3 34 34 H 1.09003 * 109.57601 * 359.83945 * 8 6 3 35 35 H 1.08997 * 109.50357 * 57.61621 * 9 8 6 36 36 H 1.09006 * 109.50008 * 297.50093 * 9 8 6 37 37 H 1.08996 * 109.46399 * 60.83412 * 10 9 8 38 38 H 1.08997 * 109.46282 * 180.80624 * 10 9 8 39 39 H 1.08998 * 109.47107 * 299.99686 * 14 12 11 40 40 H 1.09004 * 109.47154 * 60.00073 * 14 12 11 41 41 H 1.08999 * 109.47086 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47539 * 183.54197 * 15 12 11 43 43 H 1.09000 * 109.47328 * 303.54275 * 15 12 11 44 44 H 0.96999 * 119.99799 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.45832 * 178.23825 * 24 11 10 46 46 H 1.08997 * 109.46367 * 58.27492 * 24 11 10 47 47 H 1.08999 * 109.50546 * 299.24148 * 25 24 11 48 48 H 1.09008 * 109.50242 * 179.12244 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5134 1.5016 -1.2697 9 6 5.5001 2.6695 -1.3523 10 6 6.3013 2.5632 -2.6518 11 7 7.0244 1.2853 -2.6793 12 6 7.9125 1.2079 -3.8469 13 1 8.3165 0.1991 -3.9299 14 6 7.1219 1.5464 -5.1123 15 6 9.0609 2.2052 -3.6811 16 6 9.8914 1.8205 -2.4838 17 1 9.6765 0.9075 -1.9483 18 6 10.9254 2.6342 -2.0718 19 7 11.6498 2.2987 -1.0266 20 14 11.2974 4.2130 -2.9981 21 1 10.5147 5.3289 -2.4089 22 1 12.7473 4.5172 -2.8955 23 1 10.9262 4.0482 -4.4264 24 6 6.0951 0.1487 -2.6487 25 6 5.2877 0.1830 -1.3492 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.7855 2.5089 1.5824 32 1 3.8830 1.0407 2.0275 33 1 5.4182 0.9060 1.1369 34 1 3.8087 1.5607 -2.0992 35 1 6.1802 2.6322 -0.5013 36 1 4.9512 3.6112 -1.3393 37 1 5.6220 2.6144 -3.5026 38 1 7.0148 3.3854 -2.7069 39 1 6.3038 0.8359 -5.2305 40 1 6.7179 2.5554 -5.0294 41 1 7.7810 1.4894 -5.9786 42 1 9.6847 2.1930 -4.5748 43 1 8.6548 3.2061 -3.5351 44 1 12.3775 2.8709 -0.7370 45 1 6.6589 -0.7828 -2.7017 46 1 5.4167 0.2112 -3.4996 47 1 5.9645 0.1066 -0.4981 48 1 4.5871 -0.6520 -1.3339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351490254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:30 Heat of formation + Delta-G solvation = -93.655400 kcal Electronic energy + Delta-G solvation = -26654.655911 eV Core-core repulsion = 23063.693028 eV Total energy + Delta-G solvation = -3590.962883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56627 -38.24934 -37.86532 -37.01447 -35.11858 -34.02453 -33.82312 -31.79595 -30.80425 -29.35377 -27.44785 -25.30606 -24.84176 -24.19317 -23.68749 -21.14231 -20.03584 -19.81358 -18.76205 -18.71487 -17.59133 -17.37346 -16.86652 -16.39994 -16.01009 -15.57229 -15.23313 -15.18661 -15.00356 -14.81269 -14.62606 -14.24088 -14.08431 -13.90195 -13.69904 -13.56923 -13.44784 -13.40108 -13.22503 -13.19778 -12.91060 -12.76445 -12.61678 -12.56727 -12.39985 -12.22450 -11.97693 -11.84035 -11.76250 -11.58602 -11.53005 -11.28943 -11.21674 -10.94527 -10.63425 -9.89337 -8.80560 -8.14501 -6.11537 -0.76035 1.37616 1.38871 1.49277 1.61076 2.43627 2.88153 3.11253 3.12218 3.27741 3.55623 3.76673 3.88436 3.90355 4.06752 4.14800 4.18983 4.37493 4.39301 4.44601 4.46846 4.54268 4.63285 4.67634 4.70662 4.71386 4.78569 4.83351 4.90000 4.92194 4.98548 5.05005 5.09383 5.11494 5.18617 5.20015 5.26168 5.28829 5.36275 5.55796 5.59085 5.61545 5.79397 6.41973 6.51907 6.60596 6.95816 7.48511 9.02809 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.003437 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.825473 B = 8145.818714 C = 8582.062684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.606 4.606 3 S 2.600 3.400 4 O -0.991 6.991 5 O -0.991 6.991 6 N -0.997 5.997 7 C 0.087 3.913 8 C 0.153 3.847 9 C -0.120 4.120 10 C 0.061 3.939 11 N -0.535 5.535 12 C 0.100 3.900 13 H 0.065 0.935 14 C -0.177 4.177 15 C -0.005 4.005 16 C -0.480 4.480 17 H 0.038 0.962 18 C -0.002 4.002 19 N -0.958 5.958 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.291 1.291 23 H -0.249 1.249 24 C 0.054 3.946 25 C -0.119 4.119 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.259 0.741 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 -7.348 -0.609 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.739 4.739 3 S 2.699 3.301 4 O -0.982 6.982 5 O -0.982 6.982 6 N -0.833 5.833 7 C -0.058 4.058 8 C 0.047 3.953 9 C -0.159 4.159 10 C -0.067 4.067 11 N -0.259 5.259 12 C -0.009 4.009 13 H 0.083 0.917 14 C -0.235 4.235 15 C -0.042 4.042 16 C -0.518 4.518 17 H 0.057 0.943 18 C -0.196 4.196 19 N -0.600 5.600 20 Si 0.763 3.237 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.173 1.173 24 C -0.074 4.074 25 C -0.159 4.159 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.207 -6.473 -0.059 24.093 hybrid contribution 0.682 0.431 -0.592 1.000 sum -22.526 -6.042 -0.651 23.331 Atomic orbital electron populations 1.21696 0.90149 1.06537 1.03545 1.30339 1.07283 1.22190 1.14126 1.05222 0.72768 0.79290 0.72829 1.93543 1.83677 1.74726 1.46248 1.93538 1.83636 1.74758 1.46257 1.57351 1.24133 1.89941 1.11864 1.21552 0.98614 1.02244 0.83347 1.20938 0.93980 0.95557 0.84794 1.21851 0.97416 0.98349 0.98320 1.21972 0.95642 0.92648 0.96479 1.61897 1.20134 1.02045 1.41858 1.21466 0.92612 0.99243 0.87554 0.91650 1.22426 1.00823 1.01782 0.98504 1.19628 0.93951 0.95327 0.95304 1.21252 1.12014 1.07061 1.11520 0.94340 1.25861 0.96442 1.01374 0.95943 1.70070 1.21998 1.40096 1.27885 0.85849 0.76867 0.80376 0.80614 1.20115 1.21702 1.17277 1.22119 0.94098 0.94073 0.97109 1.21966 0.98871 0.96804 0.98229 0.91063 0.87653 0.91028 0.82710 0.82569 0.93753 0.89139 0.89980 0.88024 0.92073 0.91813 0.93683 0.92511 0.91440 0.92607 0.91923 0.96522 0.96814 0.93219 0.90810 0.93676 0.91297 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.92 71.98 0.71 -0.79 16 2 C -0.61 -5.89 6.90 71.98 0.50 -5.39 16 3 S 2.60 52.25 5.37 -56.49 -0.30 51.94 16 4 O -0.99 -26.30 17.09 -127.65 -2.18 -28.48 16 5 O -0.99 -26.57 16.57 -127.65 -2.12 -28.69 16 6 N -1.00 -20.55 3.01 -516.11 -1.55 -22.11 16 7 C 0.09 1.71 9.22 127.77 1.18 2.89 16 8 C 0.15 3.55 2.52 45.07 0.11 3.66 16 9 C -0.12 -3.54 5.41 30.65 0.17 -3.38 16 10 C 0.06 1.99 4.47 86.32 0.39 2.37 16 11 N -0.54 -18.47 4.26 -871.13 -3.71 -22.18 16 12 C 0.10 3.65 2.26 44.92 0.10 3.75 16 13 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 14 C -0.18 -5.02 8.40 71.98 0.60 -4.42 16 15 C 0.00 -0.21 3.47 29.85 0.10 -0.10 16 16 C -0.48 -27.18 9.35 25.60 0.24 -26.95 16 17 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 18 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 19 N -0.96 -60.85 13.96 21.45 0.30 -60.55 16 20 Si 0.94 45.29 27.37 68.60 1.88 47.16 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.25 -11.12 6.69 99.48 0.67 -10.46 16 24 C 0.05 1.40 5.18 86.32 0.45 1.85 16 25 C -0.12 -2.54 5.40 30.65 0.17 -2.38 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.30 7.79 -2.39 -0.02 1.28 16 33 H 0.08 1.59 6.37 -2.39 -0.02 1.57 16 34 H 0.10 2.24 6.88 -2.39 -0.02 2.22 16 35 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 36 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.29 6.57 -2.39 -0.02 1.28 16 38 H 0.06 2.14 6.28 -2.39 -0.02 2.12 16 39 H 0.07 1.61 6.93 -2.39 -0.02 1.59 16 40 H 0.05 1.58 6.45 -2.38 -0.02 1.56 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.02 0.76 7.55 -2.39 -0.02 0.74 16 43 H 0.01 0.63 5.54 -2.39 -0.01 0.61 16 44 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.07 1.91 7.98 -2.39 -0.02 1.89 16 46 H 0.05 1.00 6.98 -2.39 -0.02 0.98 16 47 H 0.07 1.69 6.57 -2.39 -0.02 1.68 16 48 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -77.18 373.49 -1.63 -78.81 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.88 Total: 12.61 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.18 Total: -28.51 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.96 Total: -104.84 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -4.30 Total: -57.16 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.16 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.30 Total: 51.94 kcal Total: -77.18 -1.63 -78.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351490254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.849 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds