Wall clock time and date at job start Tue Mar 31 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00141 * 2 1 4 4 C 1.52993 * 109.47548 * 273.70398 * 3 2 1 5 5 H 1.09004 * 109.50499 * 306.03888 * 4 3 2 6 6 C 1.53115 * 109.53684 * 66.13838 * 4 3 2 7 7 C 1.53128 * 109.16042 * 177.61525 * 6 4 3 8 8 C 1.53030 * 109.27770 * 302.34286 * 7 6 4 9 9 N 1.46852 * 109.52303 * 59.18298 * 8 7 6 10 10 C 1.46901 * 111.00250 * 174.15621 * 9 8 7 11 11 C 1.53002 * 109.47046 * 294.21235 * 10 9 8 12 12 C 1.53001 * 109.46714 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46540 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00584 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99587 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99935 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 359.72506 * 15 13 12 18 18 H 1.48505 * 109.47029 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47634 * 210.00103 * 17 15 13 20 20 H 1.48503 * 109.47087 * 330.00341 * 17 15 13 21 21 C 1.46844 * 111.19542 * 298.25415 * 9 8 7 22 22 S 1.65593 * 119.99913 * 180.02562 * 2 1 3 23 23 C 1.81405 * 104.44752 * 274.92211 * 22 2 1 24 24 O 1.42096 * 104.27973 * 30.99221 * 22 2 1 25 25 O 1.42098 * 104.28145 * 158.85289 * 22 2 1 26 26 H 1.09004 * 109.47309 * 89.99166 * 1 2 3 27 27 H 1.08997 * 109.47443 * 209.99822 * 1 2 3 28 28 H 1.09007 * 109.46787 * 329.99471 * 1 2 3 29 29 H 1.08999 * 109.47314 * 153.70007 * 3 2 1 30 30 H 1.09002 * 109.47258 * 33.70652 * 3 2 1 31 31 H 1.08991 * 109.52354 * 297.52072 * 6 4 3 32 32 H 1.09004 * 109.52505 * 57.71255 * 6 4 3 33 33 H 1.09002 * 109.50106 * 62.29093 * 7 6 4 34 34 H 1.09004 * 109.49832 * 182.40744 * 7 6 4 35 35 H 1.08994 * 109.47049 * 299.16572 * 8 7 6 36 36 H 1.09004 * 109.46326 * 179.19173 * 8 7 6 37 37 H 1.09000 * 109.47243 * 174.20936 * 10 9 8 38 38 H 1.09001 * 109.46626 * 54.20863 * 10 9 8 39 39 H 1.09000 * 109.47344 * 59.99762 * 11 10 9 40 40 H 1.09004 * 109.46760 * 299.99714 * 11 10 9 41 41 H 1.09000 * 109.47475 * 59.99762 * 12 11 10 42 42 H 1.09001 * 109.46726 * 299.99485 * 12 11 10 43 43 H 0.96998 * 119.99521 * 180.02562 * 16 15 13 44 44 H 1.09001 * 109.46268 * 181.75311 * 21 9 8 45 45 H 1.08997 * 109.46653 * 301.73626 * 21 9 8 46 46 H 1.09000 * 109.47080 * 55.01001 * 23 22 2 47 47 H 1.08996 * 109.47288 * 175.01098 * 23 22 2 48 48 H 1.09007 * 109.47061 * 295.01053 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3719 1.7570 -1.4394 5 1 2.8351 0.9716 -2.0366 6 6 1.0037 2.1086 -2.0301 7 6 1.1935 2.6522 -3.4490 8 6 2.1184 3.8706 -3.4037 9 7 3.4140 3.4822 -2.8317 10 6 4.3737 4.5923 -2.8999 11 6 4.6937 4.9005 -4.3640 12 6 5.6937 6.0563 -4.4350 13 6 6.0093 6.3595 -5.8771 14 1 5.5430 5.7856 -6.6642 15 6 6.8927 7.3703 -6.1916 16 7 7.1678 7.6353 -7.4502 17 14 7.6924 8.3690 -4.8306 18 1 8.9651 7.7210 -4.4235 19 1 7.9712 9.7421 -5.3225 20 1 6.7766 8.4377 -3.6636 21 6 3.2627 3.0014 -1.4525 22 16 2.2929 -1.4341 -0.0006 23 6 2.3887 -1.9022 1.7494 24 8 1.4458 -2.3275 -0.7101 25 8 3.5804 -1.0953 -0.4973 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 3.1770 1.1227 0.4553 30 1 1.6388 2.0109 0.5703 31 1 0.3805 1.2150 -2.0627 32 1 0.5234 2.8664 -1.4109 33 1 1.6381 1.8808 -4.0777 34 1 0.2267 2.9444 -3.8590 35 1 1.6668 4.6468 -2.7860 36 1 2.2672 4.2514 -4.4141 37 1 5.2895 4.3134 -2.3788 38 1 3.9419 5.4753 -2.4287 39 1 3.7779 5.1794 -4.8852 40 1 5.1254 4.0175 -4.8352 41 1 6.6095 5.7770 -3.9140 42 1 5.2623 6.9394 -3.9637 43 1 7.7895 8.3461 -7.6713 44 1 4.2424 2.7508 -1.0457 45 1 2.8055 3.7815 -0.8439 46 1 1.3852 -1.9275 2.1741 47 1 2.8454 -2.8879 1.8373 48 1 2.9930 -1.1723 2.2882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352544570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:42 Heat of formation + Delta-G solvation = -76.852737 kcal Electronic energy + Delta-G solvation = -25534.519586 eV Core-core repulsion = 21944.285321 eV Total energy + Delta-G solvation = -3590.234264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.41389 -37.47739 -36.96132 -36.21624 -34.52907 -32.81464 -31.56853 -31.04211 -29.92410 -27.75478 -27.02107 -24.87189 -23.89822 -22.41334 -21.36369 -19.77215 -19.70402 -19.16365 -17.89484 -16.93743 -16.68099 -16.55733 -15.78744 -15.30077 -14.94244 -14.48014 -14.31685 -14.28728 -14.03683 -13.94127 -13.61465 -13.59392 -13.47118 -13.16637 -12.76547 -12.48637 -12.45771 -12.40500 -12.33442 -12.00485 -11.79788 -11.74374 -11.45954 -11.41868 -11.10146 -10.92791 -10.85901 -10.60626 -10.50292 -10.27810 -9.83163 -9.61129 -9.57471 -9.27253 -9.09455 -8.48270 -8.02833 -5.98720 -3.96011 -0.15318 2.22124 3.34356 3.41109 3.44967 3.51082 3.71779 4.02757 4.18635 4.36761 4.45512 4.49938 4.62180 4.75514 4.87375 5.02983 5.06649 5.13676 5.17973 5.28882 5.35098 5.36686 5.38665 5.45908 5.55267 5.64035 5.66168 5.70801 5.80911 5.88735 5.94019 6.06583 6.11755 6.18767 6.23820 6.29785 6.43311 6.63148 6.66421 6.99213 7.34738 7.37358 7.45820 7.54525 7.86485 8.61281 9.07378 9.64069 11.14942 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002391 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.367258 B =11707.403373 C =12074.630356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.000 6.000 3 C 0.131 3.869 4 C -0.105 4.105 5 H 0.089 0.911 6 C -0.116 4.116 7 C -0.118 4.118 8 C 0.052 3.948 9 N -0.537 5.537 10 C 0.055 3.945 11 C -0.098 4.098 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.064 3.936 22 S 2.607 3.393 23 C -0.676 4.676 24 O -0.954 6.954 25 O -0.944 6.944 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.011 0.989 42 H 0.012 0.988 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 -17.587 23.182 33.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.005 3.995 4 C -0.125 4.125 5 H 0.107 0.893 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.075 4.075 9 N -0.261 5.261 10 C -0.072 4.072 11 C -0.135 4.135 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.065 4.065 22 S 2.699 3.301 23 C -0.826 4.826 24 O -0.945 6.945 25 O -0.934 6.934 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.796 -18.288 22.059 32.719 hybrid contribution 0.054 1.430 1.851 2.339 sum -15.742 -16.858 23.910 33.222 Atomic orbital electron populations 1.21575 0.78436 1.02534 1.02714 1.57438 1.15119 1.21439 1.89788 1.21354 0.96300 0.84482 0.97368 1.21649 0.96309 0.98598 0.95956 0.89279 1.21746 0.96491 1.00575 0.96560 1.21597 0.98770 0.98305 0.96891 1.22140 0.88962 0.95745 1.00695 1.61893 1.09666 1.36236 1.18282 1.22294 0.94729 0.90420 0.99751 1.21481 0.99731 0.99732 0.92599 1.19555 0.94194 0.93559 0.97814 1.21160 1.25696 1.17387 0.91226 0.91032 1.25051 0.96338 0.96994 0.95287 1.69927 1.35777 1.31775 1.16994 0.86760 0.80058 0.79481 0.82845 1.20312 1.21503 1.19110 1.21993 0.99445 0.95219 0.89873 1.05132 0.74133 0.73399 0.77469 1.30605 1.11344 1.12417 1.28189 1.93615 1.67512 1.64435 1.68902 1.93657 1.40411 1.82187 1.77159 0.91730 0.91566 0.90905 0.89758 0.90319 0.91465 0.92550 0.91066 0.91810 0.95450 0.89866 0.91229 0.95529 0.92875 0.91956 0.97085 0.96954 0.92832 0.90650 0.95317 0.85626 0.85522 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 9.11 59.85 0.55 0.99 16 2 N -1.00 -6.55 3.02 -121.76 -0.37 -6.92 16 3 C 0.13 0.94 4.77 -4.05 -0.02 0.92 16 4 C -0.10 -1.09 2.55 -90.54 -0.23 -1.32 16 5 H 0.09 1.16 7.99 -51.93 -0.41 0.74 16 6 C -0.12 -1.11 4.76 -26.61 -0.13 -1.24 16 7 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 8 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 9 N -0.54 -8.03 4.66 -234.67 -1.09 -9.12 16 10 C 0.06 0.93 4.96 -3.82 -0.02 0.91 16 11 C -0.10 -2.01 5.08 -26.73 -0.14 -2.15 16 12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 13 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 17 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 C 0.06 0.76 4.74 -3.83 -0.02 0.74 16 22 S 2.61 20.06 5.96 -107.50 -0.64 19.42 16 23 C -0.68 -2.44 10.99 101.05 1.11 -1.32 16 24 O -0.95 -10.50 17.28 -57.54 -0.99 -11.50 16 25 O -0.94 -10.95 16.67 -57.54 -0.96 -11.91 16 26 H 0.06 0.37 6.33 -51.93 -0.33 0.05 16 27 H 0.07 0.22 7.92 -51.93 -0.41 -0.20 16 28 H 0.07 0.23 7.93 -51.93 -0.41 -0.18 16 29 H 0.08 0.55 7.51 -51.93 -0.39 0.16 16 30 H 0.08 0.41 7.94 -51.93 -0.41 0.00 16 31 H 0.07 0.58 5.40 -51.93 -0.28 0.30 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 37 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.05 1.09 6.43 -51.93 -0.33 0.76 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 42 H 0.01 0.30 7.19 -51.93 -0.37 -0.07 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 47 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -36.68 379.44 -10.57 -47.25 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -8.72 Total: -5.31 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 0.38 Total: -17.38 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.69 Total: -43.81 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.95 Total: -23.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 20.06 SS G_CDS: -0.64 Total: 19.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.68 -10.57 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.607 kcal (2) G-P(sol) polarization free energy of solvation -36.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds