Wall clock time and date at job start Tue Mar 31 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00141 * 2 1 4 4 C 1.52993 * 109.47548 * 273.70398 * 3 2 1 5 5 H 1.09004 * 109.50499 * 306.03888 * 4 3 2 6 6 C 1.53115 * 109.53684 * 66.13838 * 4 3 2 7 7 C 1.53128 * 109.16042 * 177.61525 * 6 4 3 8 8 C 1.53030 * 109.27770 * 302.34286 * 7 6 4 9 9 N 1.46852 * 109.52303 * 59.18298 * 8 7 6 10 10 C 1.46901 * 111.00250 * 174.15621 * 9 8 7 11 11 C 1.53002 * 109.47046 * 294.21235 * 10 9 8 12 12 C 1.53001 * 109.46714 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46540 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00584 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99587 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99935 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 359.72506 * 15 13 12 18 18 H 1.48505 * 109.47029 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47634 * 210.00103 * 17 15 13 20 20 H 1.48503 * 109.47087 * 330.00341 * 17 15 13 21 21 C 1.46844 * 111.19542 * 298.25415 * 9 8 7 22 22 S 1.65593 * 119.99913 * 180.02562 * 2 1 3 23 23 C 1.81405 * 104.44752 * 274.92211 * 22 2 1 24 24 O 1.42096 * 104.27973 * 30.99221 * 22 2 1 25 25 O 1.42098 * 104.28145 * 158.85289 * 22 2 1 26 26 H 1.09004 * 109.47309 * 89.99166 * 1 2 3 27 27 H 1.08997 * 109.47443 * 209.99822 * 1 2 3 28 28 H 1.09007 * 109.46787 * 329.99471 * 1 2 3 29 29 H 1.08999 * 109.47314 * 153.70007 * 3 2 1 30 30 H 1.09002 * 109.47258 * 33.70652 * 3 2 1 31 31 H 1.08991 * 109.52354 * 297.52072 * 6 4 3 32 32 H 1.09004 * 109.52505 * 57.71255 * 6 4 3 33 33 H 1.09002 * 109.50106 * 62.29093 * 7 6 4 34 34 H 1.09004 * 109.49832 * 182.40744 * 7 6 4 35 35 H 1.08994 * 109.47049 * 299.16572 * 8 7 6 36 36 H 1.09004 * 109.46326 * 179.19173 * 8 7 6 37 37 H 1.09000 * 109.47243 * 174.20936 * 10 9 8 38 38 H 1.09001 * 109.46626 * 54.20863 * 10 9 8 39 39 H 1.09000 * 109.47344 * 59.99762 * 11 10 9 40 40 H 1.09004 * 109.46760 * 299.99714 * 11 10 9 41 41 H 1.09000 * 109.47475 * 59.99762 * 12 11 10 42 42 H 1.09001 * 109.46726 * 299.99485 * 12 11 10 43 43 H 0.96998 * 119.99521 * 180.02562 * 16 15 13 44 44 H 1.09001 * 109.46268 * 181.75311 * 21 9 8 45 45 H 1.08997 * 109.46653 * 301.73626 * 21 9 8 46 46 H 1.09000 * 109.47080 * 55.01001 * 23 22 2 47 47 H 1.08996 * 109.47288 * 175.01098 * 23 22 2 48 48 H 1.09007 * 109.47061 * 295.01053 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3719 1.7570 -1.4394 5 1 2.8351 0.9716 -2.0366 6 6 1.0037 2.1086 -2.0301 7 6 1.1935 2.6522 -3.4490 8 6 2.1184 3.8706 -3.4037 9 7 3.4140 3.4822 -2.8317 10 6 4.3737 4.5923 -2.8999 11 6 4.6937 4.9005 -4.3640 12 6 5.6937 6.0563 -4.4350 13 6 6.0093 6.3595 -5.8771 14 1 5.5430 5.7856 -6.6642 15 6 6.8927 7.3703 -6.1916 16 7 7.1678 7.6353 -7.4502 17 14 7.6924 8.3690 -4.8306 18 1 8.9651 7.7210 -4.4235 19 1 7.9712 9.7421 -5.3225 20 1 6.7766 8.4377 -3.6636 21 6 3.2627 3.0014 -1.4525 22 16 2.2929 -1.4341 -0.0006 23 6 2.3887 -1.9022 1.7494 24 8 1.4458 -2.3275 -0.7101 25 8 3.5804 -1.0953 -0.4973 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 3.1770 1.1227 0.4553 30 1 1.6388 2.0109 0.5703 31 1 0.3805 1.2150 -2.0627 32 1 0.5234 2.8664 -1.4109 33 1 1.6381 1.8808 -4.0777 34 1 0.2267 2.9444 -3.8590 35 1 1.6668 4.6468 -2.7860 36 1 2.2672 4.2514 -4.4141 37 1 5.2895 4.3134 -2.3788 38 1 3.9419 5.4753 -2.4287 39 1 3.7779 5.1794 -4.8852 40 1 5.1254 4.0175 -4.8352 41 1 6.6095 5.7770 -3.9140 42 1 5.2623 6.9394 -3.9637 43 1 7.7895 8.3461 -7.6713 44 1 4.2424 2.7508 -1.0457 45 1 2.8055 3.7815 -0.8439 46 1 1.3852 -1.9275 2.1741 47 1 2.8454 -2.8879 1.8373 48 1 2.9930 -1.1723 2.2882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352544570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:42 Heat of formation + Delta-G solvation = -104.802367 kcal Electronic energy + Delta-G solvation = -25535.731573 eV Core-core repulsion = 21944.285321 eV Total energy + Delta-G solvation = -3591.446251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35490 -38.18559 -37.74352 -36.92365 -36.01642 -34.53178 -32.75323 -32.39931 -30.25645 -28.80260 -28.25819 -25.59274 -25.24429 -23.46098 -22.78401 -21.37986 -20.61354 -19.75548 -18.88520 -18.44680 -17.50741 -17.21637 -16.84400 -16.34338 -16.19903 -15.94881 -15.36867 -15.17616 -14.89252 -14.86935 -14.67440 -14.53379 -14.09395 -13.93559 -13.75243 -13.70774 -13.52192 -13.24051 -13.18762 -13.11565 -13.03688 -12.71346 -12.50491 -12.40165 -12.35640 -12.10036 -11.83096 -11.80577 -11.70844 -11.62149 -11.40954 -11.31844 -11.14048 -11.03271 -10.75684 -9.84870 -9.15929 -8.29143 -6.33762 -0.67413 1.36115 1.38550 1.50818 1.71667 2.37040 2.95511 3.03883 3.05808 3.21444 3.72511 3.82724 3.90201 4.04025 4.11641 4.19257 4.21492 4.26162 4.34382 4.47763 4.51167 4.60547 4.64726 4.69514 4.74163 4.77942 4.83430 4.89042 4.91649 4.95142 4.97291 5.02111 5.04358 5.06981 5.15298 5.24405 5.25875 5.44237 5.48550 5.54888 5.61461 5.66765 5.72086 6.19488 6.30925 6.32582 6.74433 7.30626 8.88095 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002391 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.367258 B =11707.403373 C =12074.630356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.999 5.999 3 C 0.133 3.867 4 C -0.105 4.105 5 H 0.052 0.948 6 C -0.110 4.110 7 C -0.117 4.117 8 C 0.053 3.947 9 N -0.556 5.556 10 C 0.067 3.933 11 C -0.089 4.089 12 C -0.008 4.008 13 C -0.534 4.534 14 H 0.025 0.975 15 C -0.001 4.001 16 N -0.954 5.954 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.243 1.243 21 C 0.063 3.937 22 S 2.602 3.398 23 C -0.649 4.649 24 O -0.999 6.999 25 O -0.995 6.995 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.152 0.848 47 H 0.139 0.861 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 -17.183 27.935 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.837 5.837 3 C 0.007 3.993 4 C -0.126 4.126 5 H 0.071 0.929 6 C -0.147 4.147 7 C -0.154 4.154 8 C -0.075 4.075 9 N -0.281 5.281 10 C -0.060 4.060 11 C -0.127 4.127 12 C -0.046 4.046 13 C -0.572 4.572 14 H 0.044 0.956 15 C -0.197 4.197 16 N -0.595 5.595 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.167 1.167 21 C -0.065 4.065 22 S 2.699 3.301 23 C -0.803 4.803 24 O -0.990 6.990 25 O -0.985 6.985 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.170 0.830 47 H 0.157 0.843 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.913 -17.900 26.774 36.378 hybrid contribution 0.344 1.216 0.294 1.297 sum -16.569 -16.685 27.068 35.855 Atomic orbital electron populations 1.21784 0.77246 1.04636 1.02446 1.57224 1.15769 1.20582 1.90076 1.21373 0.97465 0.85282 0.95188 1.21640 0.96062 0.96862 0.97996 0.92904 1.21733 0.96339 1.01458 0.95219 1.21592 0.98724 0.96809 0.98314 1.22127 0.88968 0.96965 0.99428 1.61817 1.10026 1.35496 1.20772 1.22032 0.95830 0.91676 0.96473 1.21299 0.98267 0.97493 0.95610 1.19483 0.95489 0.95174 0.94471 1.21515 1.25653 1.17129 0.92943 0.95611 1.26121 0.96968 0.98346 0.98266 1.70093 1.36844 1.32820 1.19729 0.85555 0.79405 0.77437 0.79593 1.19083 1.20884 1.16681 1.22070 1.00099 0.96238 0.88093 1.04912 0.72708 0.73128 0.79308 1.30343 1.13706 1.13485 1.22734 1.93555 1.68083 1.65594 1.71732 1.93592 1.42495 1.82841 1.79599 0.93269 0.89946 0.88366 0.89246 0.87142 0.90587 0.90352 0.93350 0.90255 0.94263 0.92379 0.90638 0.94510 0.93660 0.94022 0.96212 0.96023 0.92492 0.90781 0.93260 0.82968 0.84295 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 9.11 127.77 1.16 1.75 16 2 N -1.00 -10.98 3.02 -539.14 -1.63 -12.61 16 3 C 0.13 1.55 4.77 86.38 0.41 1.96 16 4 C -0.10 -2.06 2.55 -10.74 -0.03 -2.09 16 5 H 0.05 1.43 7.99 -2.38 -0.02 1.41 16 6 C -0.11 -1.91 4.76 30.68 0.15 -1.76 16 7 C -0.12 -2.64 6.09 30.65 0.19 -2.45 16 8 C 0.05 1.43 5.29 86.32 0.46 1.89 16 9 N -0.56 -16.44 4.66 -896.35 -4.17 -20.62 16 10 C 0.07 2.22 4.96 86.30 0.43 2.65 16 11 C -0.09 -3.74 5.08 30.60 0.16 -3.58 16 12 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 13 C -0.53 -32.40 9.66 25.60 0.25 -32.15 16 14 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 15 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 16 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 17 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 21 C 0.06 1.41 4.74 86.33 0.41 1.81 16 22 S 2.60 37.79 5.96 -56.49 -0.34 37.45 16 23 C -0.65 -2.32 10.99 113.37 1.25 -1.07 16 24 O -1.00 -22.16 17.28 -127.65 -2.21 -24.37 16 25 O -0.99 -23.58 16.67 -127.65 -2.13 -25.71 16 26 H 0.05 0.50 6.33 -2.38 -0.02 0.48 16 27 H 0.08 0.30 7.92 -2.39 -0.02 0.29 16 28 H 0.10 0.20 7.93 -2.38 -0.02 0.18 16 29 H 0.09 0.97 7.51 -2.39 -0.02 0.95 16 30 H 0.11 0.63 7.94 -2.39 -0.02 0.62 16 31 H 0.08 1.21 5.40 -2.39 -0.01 1.19 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.83 6.21 -2.39 -0.01 1.82 16 37 H 0.08 2.39 7.99 -2.39 -0.02 2.37 16 38 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 39 H 0.04 1.94 6.43 -2.39 -0.02 1.93 16 40 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.02 0.92 7.58 -2.39 -0.02 0.91 16 42 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.07 1.65 8.02 -2.39 -0.02 1.63 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.14 0.30 8.14 -2.39 -0.02 0.29 16 48 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -84.22 379.44 -2.03 -86.25 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 0.85 Total: 6.90 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 5.41 Total: -32.90 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -5.50 Total: -94.82 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -4.33 Total: -50.08 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Atomic # 16 Polarization: 37.79 SS G_CDS: -0.34 Total: 37.45 kcal Total: -84.22 -2.03 -86.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.555 kcal (2) G-P(sol) polarization free energy of solvation -84.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds