Wall clock time and date at job start Tue Mar 31 2020 12:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46498 * 120.00301 * 2 1 4 4 C 1.53008 * 109.47130 * 84.99595 * 3 2 1 5 5 H 1.09009 * 109.52937 * 54.90607 * 4 3 2 6 6 C 1.53099 * 109.48809 * 294.81642 * 4 3 2 7 7 C 1.53126 * 109.15071 * 182.39661 * 6 4 3 8 8 C 1.53039 * 109.28009 * 57.65227 * 7 6 4 9 9 N 1.46854 * 109.52227 * 300.82107 * 8 7 6 10 10 C 1.46898 * 110.99958 * 185.83752 * 9 8 7 11 11 C 1.52999 * 109.47056 * 45.78975 * 10 9 8 12 12 C 1.53003 * 109.47347 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47493 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00376 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99690 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47236 * 89.99685 * 17 15 13 19 19 H 1.48497 * 109.46853 * 209.99918 * 17 15 13 20 20 H 1.48495 * 109.47150 * 329.99737 * 17 15 13 21 21 C 1.46847 * 111.19790 * 61.74204 * 9 8 7 22 22 S 1.65604 * 120.00048 * 180.02562 * 2 1 3 23 23 C 1.81400 * 104.44849 * 270.00097 * 22 2 1 24 24 O 1.42100 * 104.27549 * 26.07012 * 22 2 1 25 25 O 1.42097 * 104.27874 * 153.92951 * 22 2 1 26 26 H 1.09003 * 109.47434 * 89.99900 * 1 2 3 27 27 H 1.09003 * 109.47535 * 209.99705 * 1 2 3 28 28 H 1.08997 * 109.47381 * 329.99657 * 1 2 3 29 29 H 1.09003 * 109.47071 * 325.00606 * 3 2 1 30 30 H 1.08998 * 109.47746 * 204.99779 * 3 2 1 31 31 H 1.08990 * 109.52931 * 62.49409 * 6 4 3 32 32 H 1.09002 * 109.57693 * 302.32940 * 6 4 3 33 33 H 1.08994 * 109.50076 * 297.71308 * 7 6 4 34 34 H 1.08998 * 109.53581 * 177.61293 * 7 6 4 35 35 H 1.08993 * 109.46667 * 180.80353 * 8 7 6 36 36 H 1.09008 * 109.45528 * 60.82642 * 8 7 6 37 37 H 1.08992 * 109.47195 * 165.79065 * 10 9 8 38 38 H 1.09001 * 109.47336 * 285.79379 * 10 9 8 39 39 H 1.09005 * 109.47147 * 299.99934 * 11 10 9 40 40 H 1.08994 * 109.47509 * 59.99763 * 11 10 9 41 41 H 1.08992 * 109.47064 * 300.00188 * 12 11 10 42 42 H 1.09001 * 109.46707 * 60.00069 * 12 11 10 43 43 H 0.97002 * 120.00319 * 180.02562 * 16 15 13 44 44 H 1.09002 * 109.46481 * 58.27472 * 21 9 8 45 45 H 1.08994 * 109.46283 * 178.25325 * 21 9 8 46 46 H 1.08996 * 109.47563 * 59.99746 * 23 22 2 47 47 H 1.08998 * 109.47155 * 180.02562 * 23 22 2 48 48 H 1.09007 * 109.47219 * 299.99730 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 1.4371 5 1 2.8102 1.0010 2.0488 6 6 0.9613 2.1085 2.0037 7 6 1.1213 2.6688 3.4197 8 6 2.0275 3.9013 3.3762 9 7 3.3374 3.5281 2.8272 10 6 4.2782 4.6540 2.8986 11 6 4.1947 5.3014 4.2824 12 6 5.1751 6.4737 4.3570 13 6 5.0923 7.1118 5.7197 14 1 4.4085 6.7206 6.4586 15 6 5.8888 8.1956 6.0229 16 7 6.7210 8.6723 5.1231 17 14 5.7867 8.9862 7.7124 18 1 6.7585 8.3316 8.6247 19 1 6.1072 10.4320 7.6025 20 1 4.4132 8.8233 8.2529 21 6 3.2144 3.0316 1.4507 22 16 2.2930 -1.4342 -0.0006 23 6 2.5192 -1.8269 1.7558 24 8 1.3969 -2.3559 -0.6063 25 8 3.5394 -1.1189 -0.6057 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6501 2.0043 -0.5894 30 1 3.1858 1.1177 -0.4342 31 1 0.3520 1.2054 2.0360 32 1 0.4775 2.8520 1.3703 33 1 1.5687 1.9108 4.0626 34 1 0.1443 2.9492 3.8133 35 1 2.1549 4.2942 4.3848 36 1 1.5728 4.6641 2.7440 37 1 5.2919 4.2918 2.7275 38 1 4.0221 5.3904 2.1369 39 1 3.1809 5.6636 4.4534 40 1 4.4508 4.5651 5.0441 41 1 6.1886 6.1112 4.1861 42 1 4.9193 7.2102 3.5952 43 1 7.2816 9.4346 5.3365 44 1 2.7542 3.7985 0.8277 45 1 4.2039 2.7927 1.0611 46 1 1.5451 -1.9197 2.2359 47 1 3.0625 -2.7671 1.8508 48 1 3.0866 -1.0297 2.2363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352544571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:45 Heat of formation + Delta-G solvation = -78.312487 kcal Electronic energy + Delta-G solvation = -25589.446613 eV Core-core repulsion = 21999.149049 eV Total energy + Delta-G solvation = -3590.297564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.53490 -37.48884 -37.00146 -36.25456 -34.49560 -32.90407 -31.63972 -30.77729 -29.84237 -27.77714 -26.70393 -24.86883 -24.03114 -22.51105 -21.67886 -19.96557 -19.52105 -19.15373 -17.90076 -16.86744 -16.69924 -16.39025 -15.73889 -15.24447 -14.90610 -14.57371 -14.47640 -14.35543 -14.03399 -14.00205 -13.63788 -13.54197 -13.41307 -13.12398 -12.71436 -12.56311 -12.43155 -12.35635 -12.24538 -11.88714 -11.73632 -11.58364 -11.45485 -11.38183 -11.21874 -10.93686 -10.82853 -10.71228 -10.55284 -10.29545 -10.25037 -9.65058 -9.37945 -9.28756 -9.03509 -8.35041 -8.05765 -6.00298 -4.02580 -0.09920 2.23317 3.31295 3.37474 3.40528 3.50268 3.76966 4.01938 4.25873 4.45248 4.47289 4.54082 4.58270 4.68542 4.74463 5.02430 5.09945 5.15713 5.23171 5.32037 5.35533 5.37680 5.39194 5.47779 5.58639 5.60222 5.63996 5.68613 5.80461 5.85214 5.85604 5.98437 6.06383 6.12674 6.20432 6.28927 6.30008 6.68515 6.76474 7.07681 7.37418 7.38908 7.67167 7.82145 7.99832 8.42801 9.04569 9.61468 11.11127 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002260 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.872859 B =12386.564878 C =12643.783725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.998 5.998 3 C 0.117 3.883 4 C -0.108 4.108 5 H 0.078 0.922 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.047 3.953 9 N -0.538 5.538 10 C 0.056 3.944 11 C -0.111 4.111 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.060 3.940 22 S 2.609 3.391 23 C -0.674 4.674 24 O -0.959 6.959 25 O -0.953 6.953 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 -20.023 -9.978 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.836 5.836 3 C -0.008 4.008 4 C -0.128 4.128 5 H 0.096 0.904 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.081 4.081 9 N -0.263 5.263 10 C -0.071 4.071 11 C -0.149 4.149 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.069 4.069 22 S 2.702 3.298 23 C -0.824 4.824 24 O -0.949 6.949 25 O -0.943 6.943 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.598 -20.730 -10.490 26.920 hybrid contribution -0.366 1.391 1.238 1.897 sum -13.964 -19.340 -9.252 25.585 Atomic orbital electron populations 1.21661 0.78403 1.03280 1.02521 1.57344 1.15093 1.21328 1.89793 1.21498 0.97889 0.84781 0.96671 1.21738 0.96595 0.98395 0.96080 0.90390 1.21796 0.96283 1.00654 0.96825 1.21616 0.99029 0.98232 0.96675 1.22220 0.88849 0.95723 1.01262 1.62002 1.09894 1.35474 1.18910 1.22284 0.95607 0.90094 0.99080 1.21790 1.00647 0.98776 0.93701 1.19068 0.93898 0.91702 0.96894 1.21238 1.21929 1.13726 0.98835 0.92748 1.25027 0.95425 0.97049 0.97005 1.69961 1.24582 1.25066 1.33926 0.86604 0.78358 0.78512 0.84579 1.20647 1.21250 1.19922 1.22010 0.99580 0.95193 0.90109 1.04947 0.73954 0.73276 0.77661 1.30623 1.11813 1.12364 1.27598 1.93604 1.64749 1.62773 1.73771 1.93609 1.44133 1.82866 1.73740 0.92321 0.91286 0.90052 0.89761 0.88368 0.91437 0.92106 0.91337 0.91794 0.89389 0.95259 0.90995 0.95324 0.93187 0.92600 0.96545 0.96829 0.93014 0.94811 0.90524 0.85460 0.85492 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 9.32 59.84 0.56 1.03 16 2 N -1.00 -7.02 3.03 -121.76 -0.37 -7.39 16 3 C 0.12 0.89 5.19 -4.04 -0.02 0.87 16 4 C -0.11 -0.92 2.56 -90.55 -0.23 -1.16 16 5 H 0.08 0.67 6.85 -51.92 -0.36 0.31 16 6 C -0.12 -0.93 4.07 -26.62 -0.11 -1.04 16 7 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 8 C 0.05 0.61 4.85 -3.83 -0.02 0.59 16 9 N -0.54 -7.52 4.81 -234.67 -1.13 -8.65 16 10 C 0.06 0.95 5.27 -3.83 -0.02 0.93 16 11 C -0.11 -2.25 4.40 -26.73 -0.12 -2.37 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.06 0.67 4.71 -3.84 -0.02 0.66 16 22 S 2.61 21.21 6.02 -107.50 -0.65 20.56 16 23 C -0.67 -3.49 10.99 101.05 1.11 -2.38 16 24 O -0.96 -10.50 17.09 -57.54 -0.98 -11.48 16 25 O -0.95 -11.08 16.53 -57.54 -0.95 -12.03 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 28 H 0.08 0.35 5.42 -51.93 -0.28 0.07 16 29 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 30 H 0.10 0.82 6.82 -51.93 -0.35 0.46 16 31 H 0.07 0.41 5.73 -51.93 -0.30 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.27 5.81 -51.93 -0.30 0.97 16 36 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.05 0.99 6.21 -51.93 -0.32 0.66 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 46 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.13 0.68 6.85 -51.92 -0.36 0.32 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -34.76 378.16 -10.79 -45.55 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -8.55 Total: -5.39 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 0.42 Total: -17.23 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.76 Total: -42.28 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.93 Total: -23.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 21.21 SS G_CDS: -0.65 Total: 20.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.76 -10.79 -45.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.763 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds