Wall clock time and date at job start Tue Mar 31 2020 12:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46498 * 120.00301 * 2 1 4 4 C 1.53008 * 109.47130 * 84.99595 * 3 2 1 5 5 H 1.09009 * 109.52937 * 54.90607 * 4 3 2 6 6 C 1.53099 * 109.48809 * 294.81642 * 4 3 2 7 7 C 1.53126 * 109.15071 * 182.39661 * 6 4 3 8 8 C 1.53039 * 109.28009 * 57.65227 * 7 6 4 9 9 N 1.46854 * 109.52227 * 300.82107 * 8 7 6 10 10 C 1.46898 * 110.99958 * 185.83752 * 9 8 7 11 11 C 1.52999 * 109.47056 * 45.78975 * 10 9 8 12 12 C 1.53003 * 109.47347 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47493 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00376 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99690 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47236 * 89.99685 * 17 15 13 19 19 H 1.48497 * 109.46853 * 209.99918 * 17 15 13 20 20 H 1.48495 * 109.47150 * 329.99737 * 17 15 13 21 21 C 1.46847 * 111.19790 * 61.74204 * 9 8 7 22 22 S 1.65604 * 120.00048 * 180.02562 * 2 1 3 23 23 C 1.81400 * 104.44849 * 270.00097 * 22 2 1 24 24 O 1.42100 * 104.27549 * 26.07012 * 22 2 1 25 25 O 1.42097 * 104.27874 * 153.92951 * 22 2 1 26 26 H 1.09003 * 109.47434 * 89.99900 * 1 2 3 27 27 H 1.09003 * 109.47535 * 209.99705 * 1 2 3 28 28 H 1.08997 * 109.47381 * 329.99657 * 1 2 3 29 29 H 1.09003 * 109.47071 * 325.00606 * 3 2 1 30 30 H 1.08998 * 109.47746 * 204.99779 * 3 2 1 31 31 H 1.08990 * 109.52931 * 62.49409 * 6 4 3 32 32 H 1.09002 * 109.57693 * 302.32940 * 6 4 3 33 33 H 1.08994 * 109.50076 * 297.71308 * 7 6 4 34 34 H 1.08998 * 109.53581 * 177.61293 * 7 6 4 35 35 H 1.08993 * 109.46667 * 180.80353 * 8 7 6 36 36 H 1.09008 * 109.45528 * 60.82642 * 8 7 6 37 37 H 1.08992 * 109.47195 * 165.79065 * 10 9 8 38 38 H 1.09001 * 109.47336 * 285.79379 * 10 9 8 39 39 H 1.09005 * 109.47147 * 299.99934 * 11 10 9 40 40 H 1.08994 * 109.47509 * 59.99763 * 11 10 9 41 41 H 1.08992 * 109.47064 * 300.00188 * 12 11 10 42 42 H 1.09001 * 109.46707 * 60.00069 * 12 11 10 43 43 H 0.97002 * 120.00319 * 180.02562 * 16 15 13 44 44 H 1.09002 * 109.46481 * 58.27472 * 21 9 8 45 45 H 1.08994 * 109.46283 * 178.25325 * 21 9 8 46 46 H 1.08996 * 109.47563 * 59.99746 * 23 22 2 47 47 H 1.08998 * 109.47155 * 180.02562 * 23 22 2 48 48 H 1.09007 * 109.47219 * 299.99730 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 1.4371 5 1 2.8102 1.0010 2.0488 6 6 0.9613 2.1085 2.0037 7 6 1.1213 2.6688 3.4197 8 6 2.0275 3.9013 3.3762 9 7 3.3374 3.5281 2.8272 10 6 4.2782 4.6540 2.8986 11 6 4.1947 5.3014 4.2824 12 6 5.1751 6.4737 4.3570 13 6 5.0923 7.1118 5.7197 14 1 4.4085 6.7206 6.4586 15 6 5.8888 8.1956 6.0229 16 7 6.7210 8.6723 5.1231 17 14 5.7867 8.9862 7.7124 18 1 6.7585 8.3316 8.6247 19 1 6.1072 10.4320 7.6025 20 1 4.4132 8.8233 8.2529 21 6 3.2144 3.0316 1.4507 22 16 2.2930 -1.4342 -0.0006 23 6 2.5192 -1.8269 1.7558 24 8 1.3969 -2.3559 -0.6063 25 8 3.5394 -1.1189 -0.6057 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6501 2.0043 -0.5894 30 1 3.1858 1.1177 -0.4342 31 1 0.3520 1.2054 2.0360 32 1 0.4775 2.8520 1.3703 33 1 1.5687 1.9108 4.0626 34 1 0.1443 2.9492 3.8133 35 1 2.1549 4.2942 4.3848 36 1 1.5728 4.6641 2.7440 37 1 5.2919 4.2918 2.7275 38 1 4.0221 5.3904 2.1369 39 1 3.1809 5.6636 4.4534 40 1 4.4508 4.5651 5.0441 41 1 6.1886 6.1112 4.1861 42 1 4.9193 7.2102 3.5952 43 1 7.2816 9.4346 5.3365 44 1 2.7542 3.7985 0.8277 45 1 4.2039 2.7927 1.0611 46 1 1.5451 -1.9197 2.2359 47 1 3.0625 -2.7671 1.8508 48 1 3.0866 -1.0297 2.2363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352544571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:44 Heat of formation + Delta-G solvation = -103.433007 kcal Electronic energy + Delta-G solvation = -25590.535921 eV Core-core repulsion = 21999.149049 eV Total energy + Delta-G solvation = -3591.386871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42642 -38.23147 -37.82787 -37.00151 -35.97685 -34.51338 -32.52144 -32.29826 -30.28287 -28.52636 -28.26706 -25.70481 -25.36028 -23.51172 -23.06612 -21.17035 -20.59757 -19.80226 -18.54886 -18.45790 -17.47154 -17.32688 -16.86982 -16.43838 -16.21731 -15.99060 -15.42395 -15.18517 -14.84327 -14.82319 -14.53758 -14.30867 -14.12854 -13.95134 -13.75418 -13.63786 -13.40948 -13.31682 -13.16785 -13.10670 -13.01780 -12.69490 -12.57127 -12.46802 -12.39016 -12.23934 -11.99965 -11.95365 -11.69131 -11.44975 -11.38192 -11.23708 -11.06925 -10.94256 -10.55111 -9.86519 -9.19885 -8.20388 -6.31600 -0.68595 1.39787 1.41300 1.52273 1.66408 2.40542 2.91211 2.99647 3.12787 3.19414 3.72647 3.82096 3.90894 4.00071 4.12734 4.16482 4.26058 4.27628 4.34671 4.47533 4.51393 4.59161 4.66661 4.69085 4.70468 4.80889 4.89062 4.92605 4.96443 5.00219 5.05545 5.07352 5.07566 5.16520 5.22117 5.25971 5.27409 5.42021 5.50191 5.53026 5.66408 5.74034 5.85030 6.14081 6.25944 6.30341 6.85507 7.37777 8.91599 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002260 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.872859 B =12386.564878 C =12643.783725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.997 5.997 3 C 0.122 3.878 4 C -0.101 4.101 5 H 0.082 0.918 6 C -0.115 4.115 7 C -0.112 4.112 8 C 0.043 3.957 9 N -0.541 5.541 10 C 0.066 3.934 11 C -0.094 4.094 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.056 3.944 22 S 2.612 3.388 23 C -0.658 4.658 24 O -0.992 6.992 25 O -0.997 6.997 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.055 0.945 40 H 0.052 0.948 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.264 0.736 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.151 0.849 47 H 0.141 0.859 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.098 -21.138 -8.627 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.834 5.834 3 C -0.004 4.004 4 C -0.121 4.121 5 H 0.100 0.900 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.084 4.084 9 N -0.265 5.265 10 C -0.061 4.061 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.073 4.073 22 S 2.709 3.291 23 C -0.811 4.811 24 O -0.983 6.983 25 O -0.987 6.987 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.170 0.830 47 H 0.159 0.841 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.553 -21.860 -9.181 28.356 hybrid contribution 0.241 1.732 0.819 1.931 sum -15.312 -20.128 -8.362 26.637 Atomic orbital electron populations 1.21861 0.77199 1.04721 1.02851 1.57164 1.15759 1.20455 1.90062 1.21395 0.97768 0.85212 0.96036 1.21685 0.96615 0.96957 0.96886 0.89973 1.21820 0.96025 1.01886 0.95470 1.21592 0.98773 0.96527 0.98072 1.22279 0.88854 0.97479 0.99825 1.61994 1.10060 1.33593 1.20866 1.22012 0.96486 0.90970 0.96665 1.21523 0.99115 0.96727 0.95769 1.18974 0.93903 0.92986 0.95368 1.21683 1.22128 1.14244 0.99904 0.92203 1.26002 0.94877 0.97673 1.01419 1.70098 1.25423 1.25668 1.36281 0.85442 0.78980 0.77403 0.79199 1.19748 1.20750 1.18642 1.22118 1.00320 0.96475 0.88360 1.04590 0.72708 0.72935 0.78883 1.30461 1.13655 1.13309 1.23655 1.93557 1.65293 1.63728 1.75676 1.93554 1.45850 1.83422 1.75885 0.92759 0.89890 0.88480 0.88693 0.89497 0.88774 0.91629 0.91381 0.90283 0.91371 0.95725 0.91573 0.95955 0.92673 0.92885 0.99108 0.99304 0.92774 0.94676 0.90819 0.83044 0.84057 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.32 127.77 1.19 1.83 16 2 N -1.00 -12.02 3.03 -539.13 -1.63 -13.66 16 3 C 0.12 1.64 5.19 86.38 0.45 2.09 16 4 C -0.10 -1.51 2.56 -10.75 -0.03 -1.54 16 5 H 0.08 1.18 6.85 -2.38 -0.02 1.16 16 6 C -0.11 -1.43 4.07 30.67 0.12 -1.30 16 7 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 8 C 0.04 1.07 4.85 86.32 0.42 1.49 16 9 N -0.54 -14.74 4.81 -896.37 -4.31 -19.04 16 10 C 0.07 2.28 5.27 86.30 0.46 2.74 16 11 C -0.09 -3.86 4.40 30.59 0.13 -3.72 16 12 C 0.03 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.93 -57.37 13.29 21.44 0.28 -57.08 16 17 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 C 0.06 1.19 4.71 86.32 0.41 1.60 16 22 S 2.61 39.26 6.02 -56.49 -0.34 38.92 16 23 C -0.66 -4.79 10.99 113.37 1.25 -3.55 16 24 O -0.99 -20.90 17.09 -127.65 -2.18 -23.08 16 25 O -1.00 -23.15 16.53 -127.65 -2.11 -25.26 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.08 0.46 7.79 -2.39 -0.02 0.44 16 28 H 0.10 0.49 5.42 -2.39 -0.01 0.47 16 29 H 0.09 1.08 8.11 -2.39 -0.02 1.06 16 30 H 0.09 1.40 6.82 -2.39 -0.02 1.39 16 31 H 0.09 0.72 5.73 -2.39 -0.01 0.71 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.94 5.81 -2.39 -0.01 1.92 16 36 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 39 H 0.05 2.20 6.21 -2.38 -0.01 2.19 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 46 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.14 0.96 6.85 -2.39 -0.02 0.94 16 Total: -1.00 -76.50 378.16 -1.92 -78.42 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.91 Total: 5.47 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 5.43 Total: -31.05 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -5.66 Total: -89.78 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -4.29 Total: -48.33 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 39.26 SS G_CDS: -0.34 Total: 38.92 kcal Total: -76.50 -1.92 -78.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.009 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds