Wall clock time and date at job start Tue Mar 31 2020 12:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4 8 8 N 1.46494 * 109.47528 * 179.97438 * 7 6 5 9 9 S 1.65600 * 120.00698 * 164.99687 * 8 7 6 10 10 O 1.42093 * 104.28121 * 181.07470 * 9 8 7 11 11 O 1.42107 * 104.27414 * 308.93153 * 9 8 7 12 12 C 1.81405 * 104.44725 * 64.99722 * 9 8 7 13 13 C 1.52995 * 109.47113 * 180.02562 * 12 9 8 14 14 C 1.52997 * 109.47077 * 180.02562 * 13 12 9 15 15 C 1.50707 * 109.46988 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99809 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99718 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99735 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99597 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47228 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47059 * 120.00442 * 19 17 15 22 22 H 1.48497 * 109.46889 * 240.00011 * 19 17 15 23 23 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 24 24 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 25 25 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 26 26 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 27 27 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 28 28 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 29 29 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 30 30 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 31 31 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 32 32 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 33 33 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 34 34 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 35 35 H 1.09002 * 109.46849 * 300.00072 * 7 6 5 36 36 H 1.09004 * 109.47035 * 59.99259 * 7 6 5 37 37 H 0.97006 * 119.99936 * 345.00147 * 8 7 6 38 38 H 1.08993 * 109.47253 * 300.00823 * 12 9 8 39 39 H 1.09005 * 109.46721 * 60.00743 * 12 9 8 40 40 H 1.09006 * 109.47345 * 300.00563 * 13 12 9 41 41 H 1.08997 * 109.47068 * 60.00433 * 13 12 9 42 42 H 1.09003 * 109.47208 * 299.99696 * 14 13 12 43 43 H 1.08997 * 109.47279 * 59.99997 * 14 13 12 44 44 H 0.97008 * 119.99665 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.50326 * 182.41022 * 23 5 4 46 46 H 1.08996 * 109.53714 * 62.30612 * 23 5 4 47 47 H 1.09005 * 109.46673 * 294.18102 * 24 2 1 48 48 H 1.09003 * 109.46587 * 54.14643 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2487 1.8420 0.9590 8 7 7.7015 1.7539 0.7931 9 16 8.5864 3.1231 0.5024 10 8 9.9225 2.6565 0.3751 11 8 7.9207 3.7456 -0.5879 12 6 8.3986 4.1122 2.0114 13 6 9.1797 5.4196 1.8648 14 6 9.0218 6.2535 3.1377 15 6 9.7907 7.5416 2.9930 16 1 10.3377 7.7447 2.0842 17 6 9.7959 8.4606 4.0209 18 7 9.1303 8.2128 5.1277 19 14 10.7484 10.0574 3.8412 20 1 11.4074 10.0937 2.5110 21 1 9.8159 11.2065 3.9639 22 1 11.7797 10.1411 4.9064 23 6 3.5182 -0.8715 1.0210 24 6 1.9952 -0.7707 1.1338 25 1 -0.3634 0.4471 0.9253 26 1 -0.3633 -1.0249 -0.0754 27 1 -0.3633 0.5778 -0.8499 28 1 1.5634 1.9257 -0.8330 29 1 1.7324 1.8608 0.9376 30 1 3.9099 2.3512 -0.1310 31 1 3.7820 0.8572 -1.0905 32 1 3.8886 1.0355 1.9561 33 1 6.0519 -0.2007 1.6142 34 1 5.8648 0.0298 -0.1408 35 1 5.8328 2.4877 0.1856 36 1 6.0198 2.2571 1.9406 37 1 8.1453 0.8934 0.8535 38 1 7.3437 4.3355 2.1705 39 1 8.7839 3.5520 2.8634 40 1 10.2347 5.1966 1.7054 41 1 8.7940 5.9796 1.0129 42 1 7.9669 6.4766 3.2974 43 1 9.4077 5.6933 3.9893 44 1 9.1336 8.8595 5.8508 45 1 3.9098 -1.4302 1.8710 46 1 3.7814 -1.3842 0.0959 47 1 1.7324 -0.2708 2.0661 48 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360392842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:27 Heat of formation + Delta-G solvation = -104.238667 kcal Electronic energy + Delta-G solvation = -24691.252425 eV Core-core repulsion = 21099.830618 eV Total energy + Delta-G solvation = -3591.421808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.59691 -36.95600 -36.49876 -35.72137 -34.67017 -34.06753 -32.19020 -31.21815 -29.69470 -27.81013 -26.21601 -23.94691 -23.71958 -23.17250 -21.52686 -20.64984 -20.03465 -19.14202 -17.41873 -16.67786 -16.49670 -16.01569 -15.75138 -15.48737 -15.30160 -15.01893 -14.88061 -14.48777 -14.35021 -14.08967 -13.72093 -13.28898 -12.82270 -12.72899 -12.60492 -12.29931 -12.23955 -12.06091 -11.94442 -11.82270 -11.77439 -11.69832 -11.60214 -11.50850 -11.23332 -10.94242 -10.93157 -10.83940 -10.58116 -10.50419 -10.38893 -9.95836 -9.67934 -9.31180 -9.07200 -8.70364 -8.41903 -6.06635 -4.09472 0.48771 2.87243 3.28868 3.36415 3.41497 3.56866 3.96025 4.29660 4.37724 4.41966 4.43086 4.49280 4.71666 4.82258 4.90860 4.95821 5.05797 5.11666 5.14205 5.16670 5.20041 5.24196 5.28209 5.30016 5.39227 5.44266 5.48423 5.49839 5.62148 5.63612 5.75278 5.83924 5.88517 5.91384 5.96802 6.13975 6.26986 6.45037 6.68969 6.71691 6.86667 6.92539 7.56463 7.66189 7.91681 8.32235 8.97086 9.55302 11.04636 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002344 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.410712 B =11944.368173 C =12976.322792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.119 4.119 7 C 0.111 3.889 8 N -1.125 6.125 9 S 2.602 3.398 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.111 4.111 24 C 0.055 3.945 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 -20.459 -7.482 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.156 4.156 5 C -0.108 4.108 6 C -0.158 4.158 7 C -0.016 4.016 8 N -0.884 5.884 9 S 2.697 3.303 10 O -0.955 6.955 11 O -0.953 6.953 12 C -0.741 4.741 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.149 4.149 24 C -0.073 4.073 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.131 -20.269 -8.579 26.709 hybrid contribution -0.002 0.976 1.593 1.868 sum -15.133 -19.293 -6.987 25.496 Atomic orbital electron populations 1.22353 0.87363 1.02154 1.00514 1.61937 1.07488 1.14102 1.43400 1.22127 0.95837 0.88808 1.00630 1.21760 0.93951 1.00793 0.99105 1.21194 0.94033 0.96401 0.99194 1.21787 0.94686 0.96200 1.03089 1.21407 0.79280 0.99123 1.01761 1.55698 1.16463 1.24938 1.91256 1.05247 0.73414 0.74178 0.77415 1.93574 1.35934 1.79241 1.86763 1.93565 1.75381 1.76687 1.49623 1.30541 1.10572 1.12585 1.20378 1.21497 0.98065 0.91355 1.03625 1.19069 0.97592 0.93753 0.90417 1.21301 1.30853 1.02589 1.01598 0.92293 1.25030 0.95595 0.98589 0.95244 1.69970 1.42031 1.35895 1.05567 0.86494 0.79761 0.83304 0.78229 1.19590 1.20942 1.20957 1.21631 0.94021 0.96631 1.02591 1.22099 0.95722 0.98107 0.91388 0.95732 0.91443 0.91338 0.90634 0.94789 0.90730 0.90746 0.90940 0.91089 0.90846 0.90006 0.91747 0.75266 0.85595 0.85334 0.91569 0.91552 0.96144 0.96135 0.92965 0.91386 0.90917 0.94904 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.07 0.58 0.73 16 2 N -0.54 -4.21 4.91 -242.95 -1.19 -5.40 16 3 C 0.05 0.41 5.46 -3.83 -0.02 0.39 16 4 C -0.12 -0.91 5.08 -26.65 -0.14 -1.04 16 5 C -0.09 -0.62 2.25 -90.50 -0.20 -0.82 16 6 C -0.12 -0.84 4.83 -26.73 -0.13 -0.97 16 7 C 0.11 0.99 5.89 -4.05 -0.02 0.96 16 8 N -1.13 -11.61 5.88 -10.62 -0.06 -11.67 16 9 S 2.60 37.59 5.46 -107.50 -0.59 37.01 16 10 O -0.96 -16.88 18.08 -57.54 -1.04 -17.92 16 11 O -0.96 -16.75 17.50 -57.54 -1.01 -17.76 16 12 C -0.61 -9.24 6.07 37.15 0.23 -9.02 16 13 C -0.11 -2.14 5.16 -26.74 -0.14 -2.28 16 14 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 15 C -0.53 -14.81 9.11 -34.43 -0.31 -15.12 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C -0.11 -0.72 5.38 -26.65 -0.14 -0.86 16 24 C 0.05 0.37 5.46 -3.83 -0.02 0.35 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.57 6.71 -51.93 -0.35 0.23 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.79 6.19 -51.93 -0.32 0.47 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.41 3.50 8.62 -34.47 -0.30 3.20 16 38 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -34.96 390.97 -11.80 -46.76 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.96 Total: -2.12 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -0.56 Total: -25.53 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.52 Total: -42.91 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -2.05 Total: -35.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 37.59 SS G_CDS: -0.59 Total: 37.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.96 -11.80 -46.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360392842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.477 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds