Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99919 * 2 1 4 4 C 1.50700 * 109.46751 * 275.56712 * 3 2 1 5 5 H 1.07998 * 120.00160 * 4.71209 * 4 3 2 6 6 C 1.37878 * 119.99988 * 184.71531 * 4 3 2 7 7 N 1.31512 * 119.99841 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00183 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46734 * 89.99882 * 8 6 4 10 10 H 1.48495 * 109.47052 * 210.00034 * 8 6 4 11 11 H 1.48495 * 109.46798 * 330.00103 * 8 6 4 12 12 S 1.65606 * 120.00373 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40507 * 159.57507 * 12 2 1 14 14 O 1.42103 * 106.39976 * 26.65321 * 12 2 1 15 15 N 1.65599 * 107.21648 * 273.11444 * 12 2 1 16 16 C 1.46502 * 120.00320 * 62.77551 * 15 12 2 17 17 C 1.52997 * 109.47536 * 164.44300 * 16 15 12 18 18 C 1.52998 * 109.47217 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47217 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47518 * 179.97438 * 19 18 17 21 21 C 1.54958 * 110.91983 * 71.53734 * 20 19 18 22 22 C 1.54267 * 104.16055 * 156.29744 * 21 20 19 23 23 C 1.53878 * 106.63823 * 336.44743 * 22 21 20 24 24 C 1.54268 * 106.59753 * 359.97232 * 23 22 21 25 25 H 1.09000 * 109.47173 * 270.00064 * 1 2 3 26 26 H 1.08994 * 109.46848 * 30.00541 * 1 2 3 27 27 H 1.09004 * 109.46308 * 150.00527 * 1 2 3 28 28 H 1.08995 * 109.47136 * 35.56237 * 3 2 1 29 29 H 1.08996 * 109.47480 * 155.56960 * 3 2 1 30 30 H 0.97009 * 119.99949 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00262 * 242.77014 * 15 12 2 32 32 H 1.09002 * 109.46936 * 44.44059 * 16 15 12 33 33 H 1.09007 * 109.46695 * 284.44327 * 16 15 12 34 34 H 1.09002 * 109.47205 * 59.99923 * 17 16 15 35 35 H 1.08998 * 109.47179 * 300.00003 * 17 16 15 36 36 H 1.09002 * 109.47086 * 59.99862 * 18 17 16 37 37 H 1.08997 * 109.47365 * 299.99637 * 18 17 16 38 38 H 1.09002 * 109.47205 * 59.99935 * 19 18 17 39 39 H 1.08998 * 109.47179 * 300.00015 * 19 18 17 40 40 H 1.09002 * 110.67053 * 308.23518 * 20 19 18 41 41 H 1.09004 * 110.47888 * 37.64724 * 21 20 19 42 42 H 1.09004 * 110.53216 * 274.97714 * 21 20 19 43 43 H 1.08996 * 110.04070 * 217.13677 * 22 21 20 44 44 H 1.08999 * 110.03171 * 95.75183 * 22 21 20 45 45 H 1.09007 * 110.03490 * 119.25666 * 23 22 21 46 46 H 1.08999 * 110.02961 * 240.64191 * 23 22 21 47 47 H 1.09007 * 110.48087 * 142.28782 * 24 23 22 48 48 H 1.08993 * 110.48635 * 264.79683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3292 1.7726 -1.4141 5 1 1.8447 1.2454 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6580 3.5490 -0.6913 8 14 3.2323 3.5310 -3.4289 9 1 2.1304 4.4827 -3.7204 10 1 4.5376 4.2208 -3.5886 11 1 3.1593 2.3855 -4.3710 12 16 2.2931 -1.4341 0.0006 13 8 3.6001 -1.1431 -0.4752 14 8 1.4386 -2.3911 -0.6105 15 7 2.4638 -1.9009 1.5803 16 6 1.2784 -2.1952 2.3894 17 6 1.6964 -2.9589 3.6475 18 6 0.4585 -3.2656 4.4927 19 6 0.8765 -4.0288 5.7512 20 6 -0.3613 -4.3351 6.5968 21 6 -1.2346 -5.4246 5.9250 22 6 -2.0324 -6.0416 7.0923 23 6 -1.2224 -5.7695 8.3720 24 6 0.0404 -4.9969 7.9382 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 1.6552 2.0014 0.5976 29 1 3.1894 1.1157 0.4250 30 1 4.1784 4.3467 -0.8755 31 1 3.3486 -1.9795 1.9699 32 1 0.5843 -2.8030 1.8091 33 1 0.7929 -1.2620 2.6753 34 1 2.3906 -2.3510 4.2278 35 1 2.1819 -3.8919 3.3616 36 1 -0.2360 -3.8733 3.9127 37 1 -0.0266 -2.3324 4.7787 38 1 1.5709 -3.4207 6.3310 39 1 1.3619 -4.9621 5.4657 40 1 -0.9417 -3.4291 6.7715 41 1 -0.6060 -6.1790 5.4517 42 1 -1.9100 -4.9773 5.1956 43 1 -2.1438 -7.1155 6.9422 44 1 -3.0131 -5.5713 7.1641 45 1 -1.8097 -5.1663 9.0645 46 1 -0.9414 -6.7113 8.8433 47 1 0.2954 -4.2372 8.6772 48 1 0.8756 -5.6820 7.7930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360743107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -117.635241 kcal Electronic energy + Delta-G solvation = -24867.431804 eV Core-core repulsion = 21275.429077 eV Total energy + Delta-G solvation = -3592.002727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.84246 -36.71139 -36.29545 -35.45242 -35.10887 -33.72967 -32.41483 -30.19676 -29.00117 -27.75171 -26.44392 -25.04273 -23.05406 -22.26886 -21.53015 -20.44184 -20.16980 -18.77345 -17.21586 -16.67274 -16.40827 -16.25690 -15.88735 -15.57573 -15.28799 -14.92233 -14.25654 -14.18474 -13.70338 -13.54363 -13.28605 -13.25497 -12.88189 -12.53181 -12.27469 -12.15515 -11.96454 -11.65275 -11.58552 -11.48224 -11.45608 -11.37490 -11.30993 -11.12814 -11.04638 -10.97348 -10.84133 -10.74883 -10.67342 -10.58378 -10.51243 -10.45073 -10.01965 -9.74304 -9.25350 -8.43085 -8.03873 -6.04919 -4.08929 1.28876 3.32473 3.38864 3.44628 3.57057 4.17818 4.21237 4.31001 4.37024 4.46197 4.68685 4.78755 4.92440 5.01850 5.08054 5.15209 5.18774 5.27963 5.30486 5.31854 5.32786 5.40402 5.45784 5.56406 5.61389 5.62841 5.65045 5.71764 5.77374 5.78228 5.84417 5.89983 5.98807 6.02741 6.06733 6.12443 6.19079 6.23274 6.34352 6.58235 7.13781 7.29882 7.44358 7.65551 7.92774 8.22452 8.93601 9.56272 11.03699 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.002218 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.796880 B =12622.606614 C =12790.015583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.783 3.217 13 O -0.965 6.965 14 O -1.000 7.000 15 N -1.136 6.136 16 C 0.120 3.880 17 C -0.126 4.126 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.093 4.093 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.122 4.122 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 -16.172 17.745 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.983 6.983 15 N -0.895 5.895 16 C -0.007 4.007 17 C -0.165 4.165 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.159 4.159 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.244 0.756 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.079 -16.466 16.935 25.305 hybrid contribution 0.369 0.692 -0.356 0.862 sum -8.710 -15.774 16.579 24.485 Atomic orbital electron populations 1.21371 0.80353 1.03481 1.00071 1.57589 1.14196 1.23317 1.88765 1.19060 0.91225 0.78664 0.97605 1.21502 1.31731 1.10261 0.93459 0.92154 1.24946 0.95043 0.96570 0.97516 1.69921 1.33246 1.18908 1.31330 0.86501 0.77432 0.78889 0.84652 1.20626 1.21055 1.19726 1.01898 0.73327 0.72898 0.72858 1.93639 1.38696 1.84584 1.77984 1.93517 1.69058 1.61154 1.74566 1.56244 1.13985 1.85871 1.33376 1.21217 0.87329 0.99489 0.92648 1.21791 0.98503 1.00680 0.95531 1.21564 0.97563 1.00610 0.96003 1.21587 0.97038 1.00382 0.95842 1.22182 0.96290 0.98157 0.94556 1.22461 0.98287 0.97779 0.97304 1.22143 0.98884 1.00588 0.94823 1.22132 0.96642 1.00027 0.97548 1.22423 0.97571 0.99081 0.96847 0.94385 0.90434 0.91636 0.95051 0.93961 0.92700 0.75595 0.90882 0.92001 0.91270 0.91303 0.91534 0.91615 0.91883 0.91886 0.90616 0.91565 0.91581 0.92095 0.92020 0.92056 0.92123 0.91849 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.69 59.85 0.64 2.24 16 2 N -1.00 -20.72 3.23 -123.06 -0.40 -21.11 16 3 C 0.26 6.48 5.10 -5.19 -0.03 6.45 16 4 C -0.53 -15.02 9.38 -34.44 -0.32 -15.35 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 S 2.78 55.51 6.09 -107.50 -0.65 54.86 16 13 O -0.97 -23.37 16.99 -57.17 -0.97 -24.34 16 14 O -1.00 -21.05 16.34 -57.17 -0.93 -21.99 16 15 N -1.14 -16.70 6.05 -10.61 -0.06 -16.76 16 16 C 0.12 1.43 6.26 -4.04 -0.03 1.40 16 17 C -0.13 -1.16 5.36 -26.73 -0.14 -1.31 16 18 C -0.12 -0.93 5.11 -26.73 -0.14 -1.07 16 19 C -0.11 -0.78 4.72 -26.73 -0.13 -0.91 16 20 C -0.09 -0.63 2.86 -88.59 -0.25 -0.89 16 21 C -0.12 -0.81 5.71 -25.03 -0.14 -0.96 16 22 C -0.13 -0.80 6.80 -25.61 -0.17 -0.97 16 23 C -0.13 -0.77 6.80 -25.61 -0.17 -0.94 16 24 C -0.12 -0.78 6.27 -25.07 -0.16 -0.94 16 25 H 0.04 0.52 8.05 -51.93 -0.42 0.11 16 26 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.06 1.06 7.05 -51.93 -0.37 0.69 16 28 H 0.03 0.80 8.11 -51.93 -0.42 0.37 16 29 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.41 5.33 8.66 -34.47 -0.30 5.03 16 32 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 33 H 0.06 0.70 8.05 -51.93 -0.42 0.29 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.51 7.66 -51.93 -0.40 0.12 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.46 7.95 -51.93 -0.41 0.04 16 42 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -33.68 393.96 -11.48 -45.16 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.97 Total: -1.59 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.14 Total: -11.57 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.28 Total: -63.48 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.91 Total: -46.33 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.65 Total: 54.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.68 -11.48 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360743107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.475 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds