Wall clock time and date at job start Tue Mar 31 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99919 * 2 1 4 4 C 1.50700 * 109.46751 * 275.56712 * 3 2 1 5 5 H 1.07998 * 120.00160 * 4.71209 * 4 3 2 6 6 C 1.37878 * 119.99988 * 184.71531 * 4 3 2 7 7 N 1.31512 * 119.99841 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00183 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46734 * 89.99882 * 8 6 4 10 10 H 1.48495 * 109.47052 * 210.00034 * 8 6 4 11 11 H 1.48495 * 109.46798 * 330.00103 * 8 6 4 12 12 S 1.65606 * 120.00373 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40507 * 159.57507 * 12 2 1 14 14 O 1.42103 * 106.39976 * 26.65321 * 12 2 1 15 15 N 1.65599 * 107.21648 * 273.11444 * 12 2 1 16 16 C 1.46502 * 120.00320 * 62.77551 * 15 12 2 17 17 C 1.52997 * 109.47536 * 164.44300 * 16 15 12 18 18 C 1.52998 * 109.47217 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47217 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47518 * 179.97438 * 19 18 17 21 21 C 1.54958 * 110.91983 * 71.53734 * 20 19 18 22 22 C 1.54267 * 104.16055 * 156.29744 * 21 20 19 23 23 C 1.53878 * 106.63823 * 336.44743 * 22 21 20 24 24 C 1.54268 * 106.59753 * 359.97232 * 23 22 21 25 25 H 1.09000 * 109.47173 * 270.00064 * 1 2 3 26 26 H 1.08994 * 109.46848 * 30.00541 * 1 2 3 27 27 H 1.09004 * 109.46308 * 150.00527 * 1 2 3 28 28 H 1.08995 * 109.47136 * 35.56237 * 3 2 1 29 29 H 1.08996 * 109.47480 * 155.56960 * 3 2 1 30 30 H 0.97009 * 119.99949 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00262 * 242.77014 * 15 12 2 32 32 H 1.09002 * 109.46936 * 44.44059 * 16 15 12 33 33 H 1.09007 * 109.46695 * 284.44327 * 16 15 12 34 34 H 1.09002 * 109.47205 * 59.99923 * 17 16 15 35 35 H 1.08998 * 109.47179 * 300.00003 * 17 16 15 36 36 H 1.09002 * 109.47086 * 59.99862 * 18 17 16 37 37 H 1.08997 * 109.47365 * 299.99637 * 18 17 16 38 38 H 1.09002 * 109.47205 * 59.99935 * 19 18 17 39 39 H 1.08998 * 109.47179 * 300.00015 * 19 18 17 40 40 H 1.09002 * 110.67053 * 308.23518 * 20 19 18 41 41 H 1.09004 * 110.47888 * 37.64724 * 21 20 19 42 42 H 1.09004 * 110.53216 * 274.97714 * 21 20 19 43 43 H 1.08996 * 110.04070 * 217.13677 * 22 21 20 44 44 H 1.08999 * 110.03171 * 95.75183 * 22 21 20 45 45 H 1.09007 * 110.03490 * 119.25666 * 23 22 21 46 46 H 1.08999 * 110.02961 * 240.64191 * 23 22 21 47 47 H 1.09007 * 110.48087 * 142.28782 * 24 23 22 48 48 H 1.08993 * 110.48635 * 264.79683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3292 1.7726 -1.4141 5 1 1.8447 1.2454 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6580 3.5490 -0.6913 8 14 3.2323 3.5310 -3.4289 9 1 2.1304 4.4827 -3.7204 10 1 4.5376 4.2208 -3.5886 11 1 3.1593 2.3855 -4.3710 12 16 2.2931 -1.4341 0.0006 13 8 3.6001 -1.1431 -0.4752 14 8 1.4386 -2.3911 -0.6105 15 7 2.4638 -1.9009 1.5803 16 6 1.2784 -2.1952 2.3894 17 6 1.6964 -2.9589 3.6475 18 6 0.4585 -3.2656 4.4927 19 6 0.8765 -4.0288 5.7512 20 6 -0.3613 -4.3351 6.5968 21 6 -1.2346 -5.4246 5.9250 22 6 -2.0324 -6.0416 7.0923 23 6 -1.2224 -5.7695 8.3720 24 6 0.0404 -4.9969 7.9382 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 1.6552 2.0014 0.5976 29 1 3.1894 1.1157 0.4250 30 1 4.1784 4.3467 -0.8755 31 1 3.3486 -1.9795 1.9699 32 1 0.5843 -2.8030 1.8091 33 1 0.7929 -1.2620 2.6753 34 1 2.3906 -2.3510 4.2278 35 1 2.1819 -3.8919 3.3616 36 1 -0.2360 -3.8733 3.9127 37 1 -0.0266 -2.3324 4.7787 38 1 1.5709 -3.4207 6.3310 39 1 1.3619 -4.9621 5.4657 40 1 -0.9417 -3.4291 6.7715 41 1 -0.6060 -6.1790 5.4517 42 1 -1.9100 -4.9773 5.1956 43 1 -2.1438 -7.1155 6.9422 44 1 -3.0131 -5.5713 7.1641 45 1 -1.8097 -5.1663 9.0645 46 1 -0.9414 -6.7113 8.8433 47 1 0.2954 -4.2372 8.6772 48 1 0.8756 -5.6820 7.7930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360743107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:09 Heat of formation + Delta-G solvation = -139.444887 kcal Electronic energy + Delta-G solvation = -24868.377541 eV Core-core repulsion = 21275.429077 eV Total energy + Delta-G solvation = -3592.948464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.37224 -38.29359 -37.37242 -37.15312 -36.83184 -34.58173 -34.48031 -30.93579 -29.65608 -29.49932 -27.19837 -26.75061 -24.20596 -23.81861 -22.24709 -20.96888 -20.70211 -20.24887 -18.92175 -18.43008 -18.14120 -17.36472 -16.83359 -16.65603 -16.34003 -15.97135 -15.76448 -15.16482 -14.95406 -14.80187 -14.22345 -14.14001 -14.07541 -13.86421 -13.77968 -13.35408 -13.25329 -13.10961 -13.02716 -12.91533 -12.71611 -12.65307 -12.47031 -12.36159 -12.10769 -12.08902 -11.96444 -11.87632 -11.75293 -11.59650 -11.37174 -11.22671 -11.18268 -11.12858 -10.60371 -10.42687 -9.76956 -8.20558 -6.32526 -0.28711 1.38591 1.41184 1.51636 2.07634 2.40414 2.67523 3.10417 3.47460 3.68090 3.80156 3.85509 3.99706 4.07899 4.12494 4.24768 4.42200 4.46522 4.61770 4.64114 4.64850 4.73276 4.75314 4.81708 4.83141 4.85283 4.95905 5.00233 5.01627 5.06801 5.08672 5.16772 5.20294 5.20747 5.27853 5.31437 5.37670 5.45511 5.46416 5.51784 5.58808 5.66174 5.70652 5.88557 6.09726 6.19216 6.76122 7.36379 8.87000 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.002218 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.796880 B =12622.606614 C =12790.015583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.271 3.729 4 C -0.551 4.551 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.275 1.275 12 S 2.799 3.201 13 O -1.014 7.014 14 O -1.012 7.012 15 N -1.121 6.121 16 C 0.110 3.890 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.421 0.579 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 -16.646 18.425 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.147 3.853 4 C -0.590 4.590 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.200 1.200 12 S 2.807 3.193 13 O -0.998 6.998 14 O -0.995 6.995 15 N -0.884 5.884 16 C -0.016 4.016 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.159 4.159 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.160 4.160 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.038 -16.948 17.616 26.426 hybrid contribution 0.609 0.762 -0.486 1.090 sum -9.429 -16.186 17.130 25.383 Atomic orbital electron populations 1.21619 0.78121 1.03589 1.02568 1.57461 1.15723 1.21884 1.89412 1.18619 0.90558 0.80238 0.95866 1.21857 1.31857 1.10593 0.94740 0.92901 1.25779 0.94770 0.96861 1.01547 1.70010 1.33772 1.19365 1.33179 0.85559 0.78028 0.78407 0.79738 1.18943 1.20410 1.19961 1.01163 0.71963 0.72483 0.73731 1.93568 1.41154 1.85207 1.79854 1.93496 1.69114 1.61167 1.75696 1.55795 1.15655 1.85080 1.31910 1.21540 0.86212 1.00505 0.93301 1.21762 0.99303 1.00452 0.94384 1.21535 0.96849 1.00942 0.96028 1.21542 0.97166 1.00264 0.95499 1.22160 0.96115 0.98102 0.94696 1.22466 0.98296 0.97736 0.97436 1.22162 0.98929 1.00750 0.94754 1.22148 0.96526 1.00241 0.97533 1.22428 0.97684 0.99146 0.96713 0.90683 0.91149 0.90717 0.95393 0.96310 0.92374 0.74367 0.90739 0.91031 0.90722 0.91036 0.91366 0.91265 0.91767 0.91890 0.90791 0.91804 0.91652 0.91869 0.91890 0.91828 0.91768 0.91633 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.81 10.69 127.77 1.37 4.18 16 2 N -1.00 -41.35 3.23 -543.24 -1.75 -43.10 16 3 C 0.27 13.84 5.10 85.63 0.44 14.28 16 4 C -0.55 -31.54 9.38 25.60 0.24 -31.30 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.57 5.46 84.66 0.46 1.03 16 7 N -0.92 -54.70 13.29 21.45 0.28 -54.41 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 S 2.80 110.92 6.09 -56.49 -0.34 110.58 16 13 O -1.01 -49.98 16.99 -128.00 -2.17 -52.15 16 14 O -1.01 -41.79 16.34 -128.00 -2.09 -43.89 16 15 N -1.12 -31.65 6.05 -187.48 -1.13 -32.79 16 16 C 0.11 2.39 6.26 86.38 0.54 2.93 16 17 C -0.12 -1.95 5.36 30.59 0.16 -1.79 16 18 C -0.12 -1.55 5.11 30.59 0.16 -1.39 16 19 C -0.11 -1.31 4.72 30.59 0.14 -1.17 16 20 C -0.09 -1.10 2.86 -9.48 -0.03 -1.13 16 21 C -0.12 -1.47 5.71 31.69 0.18 -1.29 16 22 C -0.13 -1.45 6.80 31.32 0.21 -1.23 16 23 C -0.13 -1.38 6.80 31.32 0.21 -1.16 16 24 C -0.12 -1.39 6.27 31.67 0.20 -1.19 16 25 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 26 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.07 2.29 7.05 -2.39 -0.02 2.27 16 28 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 29 H 0.02 1.04 7.50 -2.39 -0.02 1.03 16 30 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 31 H 0.42 10.47 8.66 -96.74 -0.84 9.63 16 32 H 0.07 1.63 7.79 -2.39 -0.02 1.61 16 33 H 0.07 1.45 8.05 -2.38 -0.02 1.43 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.78 8.00 -2.39 -0.02 0.76 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.79 7.95 -2.38 -0.02 0.78 16 42 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.06 0.74 8.05 -2.39 -0.02 0.72 16 Total: -1.00 -71.63 393.96 -0.83 -72.46 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.07 Total: 15.43 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.29 Total: -19.23 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -2.60 Total: -130.30 kcal Atomic # 8 Polarization: -91.77 SS G_CDS: -4.27 Total: -96.04 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 110.92 SS G_CDS: -0.34 Total: 110.58 kcal Total: -71.63 -0.83 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360743107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.988 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds