Wall clock time and date at job start Tue Mar 31 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47029 * 2 1 4 4 C 1.46495 * 120.00154 * 273.00306 * 3 2 1 5 5 C 1.52998 * 109.47411 * 65.79874 * 4 3 2 6 6 C 1.53004 * 109.47260 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46954 * 59.99380 * 6 5 4 8 8 C 1.52994 * 109.47554 * 300.00030 * 7 6 5 9 9 C 1.52995 * 109.47152 * 305.79166 * 4 3 2 10 10 S 1.65598 * 119.99654 * 93.00092 * 3 2 1 11 11 O 1.42105 * 106.40203 * 336.45968 * 10 3 2 12 12 O 1.42095 * 106.40318 * 203.54377 * 10 3 2 13 13 N 1.65603 * 107.22027 * 90.00011 * 10 3 2 14 14 C 1.46496 * 119.99689 * 270.00364 * 13 10 3 15 15 C 1.46490 * 119.99916 * 89.99681 * 13 10 3 16 16 H 1.09003 * 109.47202 * 0.02562 * 15 13 10 17 17 C 1.52999 * 109.47311 * 240.00216 * 15 13 10 18 18 C 1.50700 * 109.47125 * 120.00168 * 15 13 10 19 19 H 1.08001 * 119.99762 * 0.02562 * 18 15 13 20 20 C 1.37881 * 120.00400 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99785 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00049 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47227 * 120.00208 * 22 20 18 25 25 H 1.48504 * 109.46981 * 240.00105 * 22 20 18 26 26 H 1.08995 * 109.47194 * 185.74865 * 1 2 3 27 27 H 1.09003 * 109.47221 * 305.74867 * 1 2 3 28 28 H 1.09000 * 109.47423 * 65.75154 * 1 2 3 29 29 H 1.09002 * 109.46777 * 240.00611 * 2 1 3 30 30 H 1.08992 * 109.47404 * 120.00640 * 2 1 3 31 31 H 1.09000 * 109.46922 * 185.79585 * 4 3 2 32 32 H 1.09000 * 109.46842 * 299.99760 * 5 4 3 33 33 H 1.08997 * 109.47242 * 59.99738 * 5 4 3 34 34 H 1.09000 * 109.46929 * 299.99623 * 6 5 4 35 35 H 1.08994 * 109.47254 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46774 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47104 * 60.00351 * 7 6 5 38 38 H 1.09000 * 109.47176 * 300.00276 * 8 7 6 39 39 H 1.09000 * 109.47298 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47521 * 300.00609 * 9 4 3 41 41 H 1.09006 * 109.47014 * 60.00783 * 9 4 3 42 42 H 1.09003 * 109.47336 * 269.99340 * 14 13 10 43 43 H 1.08999 * 109.47679 * 29.99578 * 14 13 10 44 44 H 1.09002 * 109.47356 * 150.00037 * 14 13 10 45 45 H 1.09002 * 109.47163 * 60.00100 * 17 15 13 46 46 H 1.09003 * 109.47212 * 300.00269 * 17 15 13 47 47 H 1.08996 * 109.47310 * 180.02562 * 17 15 13 48 48 H 0.96997 * 120.00113 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1998 2.0940 -1.2669 5 6 0.8390 2.3025 -1.9344 6 6 1.0286 3.0464 -3.2579 7 6 1.9289 2.2230 -4.1812 8 6 3.2897 2.0146 -3.5138 9 6 3.1003 1.2713 -2.1905 10 16 2.3651 2.1368 1.4322 11 8 1.6065 1.4697 2.4317 12 8 2.2663 3.5324 1.1839 13 7 3.9570 1.8340 1.7734 14 6 4.3261 0.6530 2.5577 15 6 4.9960 2.7469 1.2909 16 1 4.5338 3.5604 0.7316 17 6 5.9613 1.9855 0.3803 18 6 5.7531 3.3119 2.4650 19 1 5.4872 3.0197 3.4701 20 6 6.7861 4.2010 2.2561 21 7 7.1109 4.5557 1.0321 22 14 7.7249 4.9007 3.7115 23 1 7.1693 4.3459 4.9720 24 1 9.1590 4.5322 3.5989 25 1 7.5932 6.3798 3.7207 26 1 -0.3633 -1.0224 0.1029 27 1 -0.3634 0.6004 0.8341 28 1 -0.3634 0.4220 -0.9370 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.6629 3.0621 -1.0760 32 1 0.3759 1.3344 -2.1253 33 1 0.1975 2.8887 -1.2764 34 1 1.4919 4.0145 -3.0674 35 1 0.0592 3.1945 -3.7336 36 1 2.0644 2.7532 -5.1239 37 1 1.4656 1.2550 -4.3717 38 1 3.7530 2.9827 -3.3233 39 1 3.9309 1.4277 -4.1714 40 1 4.0697 1.1228 -1.7150 41 1 2.6371 0.3032 -2.3815 42 1 4.3369 0.9091 3.6171 43 1 3.5998 -0.1408 2.3832 44 1 5.3166 0.3117 2.2564 45 1 5.4137 1.5769 -0.4690 46 1 6.4235 1.1722 0.9398 47 1 6.7347 2.6647 0.0216 48 1 7.8373 5.1815 0.8851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407975731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:09 Heat of formation + Delta-G solvation = -91.926776 kcal Electronic energy + Delta-G solvation = -27885.067873 eV Core-core repulsion = 24294.179949 eV Total energy + Delta-G solvation = -3590.887924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.02694 -36.72105 -36.12913 -35.39700 -35.14098 -32.56318 -30.94892 -30.61973 -29.08369 -28.36132 -25.56618 -25.12470 -23.40328 -22.37772 -21.77917 -20.62399 -19.53183 -18.35738 -17.31952 -16.84435 -16.37090 -16.05329 -15.09015 -14.80124 -14.37122 -14.25762 -14.14140 -13.66695 -13.49397 -13.29487 -13.18199 -12.97658 -12.75612 -12.31719 -12.13969 -12.05820 -11.95587 -11.72502 -11.65013 -11.49235 -11.34428 -11.21053 -11.13642 -10.97306 -10.90526 -10.78714 -10.65283 -10.48891 -10.30475 -10.28491 -10.19218 -10.05431 -9.95804 -9.23023 -8.77025 -8.44645 -7.92087 -6.06536 -4.12605 1.21476 3.28209 3.36403 3.40645 3.47980 4.10652 4.41241 4.70916 4.77707 4.83122 4.98819 5.04855 5.24490 5.25664 5.29555 5.33825 5.43974 5.49400 5.53761 5.57568 5.59356 5.68529 5.73608 5.78206 5.87598 6.05898 6.09658 6.11100 6.16513 6.21864 6.25014 6.32264 6.34253 6.40509 6.42532 6.61015 6.64386 6.80649 6.82183 6.96795 7.04022 7.49920 7.65588 7.80590 8.05735 8.29393 8.89949 9.53175 10.99091 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.005341 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.312151 B = 5240.725428 C = 6217.710652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 N -1.005 6.005 4 C 0.153 3.847 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.129 4.129 10 S 2.774 3.226 11 O -0.994 6.994 12 O -0.973 6.973 13 N -0.991 5.991 14 C 0.111 3.889 15 C 0.269 3.731 16 H 0.057 0.943 17 C -0.149 4.149 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.032 0.968 47 H 0.092 0.908 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -9.399 -9.403 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.003 4.003 3 N -0.842 5.842 4 C 0.047 3.953 5 C -0.168 4.168 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.168 4.168 10 S 2.785 3.215 11 O -0.978 6.978 12 O -0.957 6.957 13 N -0.834 5.834 14 C -0.035 4.035 15 C 0.166 3.834 16 H 0.075 0.925 17 C -0.208 4.208 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.032 0.968 46 H 0.051 0.949 47 H 0.111 0.889 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.910 -8.779 -8.935 15.972 hybrid contribution 0.881 0.143 0.571 1.059 sum -9.029 -8.636 -8.364 15.036 Atomic orbital electron populations 1.22412 0.96439 1.01999 1.02742 1.21092 0.94191 0.82379 1.02636 1.58350 1.80225 1.23305 1.22316 1.20829 0.95610 0.95838 0.83051 1.22052 0.97365 1.00867 0.96477 1.21537 0.99580 0.99380 0.95290 1.21546 0.95915 0.99948 0.98169 1.21506 0.96903 1.01211 0.96080 1.21933 1.00513 0.98845 0.95495 1.02153 0.73264 0.73320 0.72763 1.93525 1.70385 1.76763 1.57134 1.93584 1.86437 1.30391 1.85317 1.57774 1.24938 1.35096 1.65545 1.21125 1.00848 0.85966 0.95590 1.18702 0.84498 0.86224 0.93986 0.92529 1.22162 1.01399 1.00138 0.97088 1.21385 1.15755 1.25624 0.93036 0.91990 1.24900 0.96957 0.96078 0.95947 1.69860 1.29849 1.33813 1.19401 0.86458 0.79421 0.78940 0.82703 1.19746 1.21004 1.20901 0.92084 0.92011 0.91870 0.90589 0.90748 0.88326 0.91184 0.91721 0.91492 0.92057 0.92204 0.92290 0.91330 0.91900 0.90613 0.91799 0.93398 0.93519 0.91043 0.96774 0.94880 0.88931 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.83 37.16 0.37 -1.65 16 2 C 0.12 1.53 5.66 -4.04 -0.02 1.50 16 3 N -1.01 -15.51 2.79 -107.31 -0.30 -15.81 16 4 C 0.15 2.21 2.46 -67.94 -0.17 2.04 16 5 C -0.13 -1.57 4.59 -26.73 -0.12 -1.69 16 6 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 7 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 8 C -0.12 -1.33 5.92 -26.76 -0.16 -1.49 16 9 C -0.13 -1.61 5.04 -26.76 -0.13 -1.74 16 10 S 2.77 55.84 5.99 -107.50 -0.64 55.19 16 11 O -0.99 -20.93 16.06 -57.17 -0.92 -21.84 16 12 O -0.97 -23.03 15.33 -57.17 -0.88 -23.91 16 13 N -0.99 -20.77 3.12 -115.86 -0.36 -21.13 16 14 C 0.11 2.01 9.53 59.84 0.57 2.58 16 15 C 0.27 6.53 2.62 -69.09 -0.18 6.35 16 16 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 17 C -0.15 -3.30 8.95 37.16 0.33 -2.96 16 18 C -0.52 -14.01 8.37 -34.44 -0.29 -14.30 16 19 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.83 7.98 -51.93 -0.41 0.42 16 28 H 0.06 0.65 5.35 -51.93 -0.28 0.37 16 29 H 0.08 0.78 6.17 -51.93 -0.32 0.46 16 30 H 0.07 0.93 7.30 -51.93 -0.38 0.55 16 31 H 0.10 1.70 7.02 -51.93 -0.36 1.33 16 32 H 0.07 0.75 5.66 -51.93 -0.29 0.46 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 41 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.70 7.41 -51.93 -0.38 0.32 16 44 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 45 H 0.01 0.26 6.21 -51.93 -0.32 -0.06 16 46 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 47 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 48 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -30.91 366.74 -10.30 -41.21 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.11 Total: 1.08 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.22 Total: -12.51 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.03 Total: -60.94 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.79 Total: -45.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.64 Total: 55.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.91 -10.30 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.715 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds