Wall clock time and date at job start Tue Mar 31 2020 11:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47029 * 2 1 4 4 C 1.46495 * 120.00154 * 273.00306 * 3 2 1 5 5 C 1.52998 * 109.47411 * 65.79874 * 4 3 2 6 6 C 1.53004 * 109.47260 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46954 * 59.99380 * 6 5 4 8 8 C 1.52994 * 109.47554 * 300.00030 * 7 6 5 9 9 C 1.52995 * 109.47152 * 305.79166 * 4 3 2 10 10 S 1.65598 * 119.99654 * 93.00092 * 3 2 1 11 11 O 1.42105 * 106.40203 * 336.45968 * 10 3 2 12 12 O 1.42095 * 106.40318 * 203.54377 * 10 3 2 13 13 N 1.65603 * 107.22027 * 90.00011 * 10 3 2 14 14 C 1.46496 * 119.99689 * 270.00364 * 13 10 3 15 15 C 1.46490 * 119.99916 * 89.99681 * 13 10 3 16 16 H 1.09003 * 109.47202 * 0.02562 * 15 13 10 17 17 C 1.52999 * 109.47311 * 240.00216 * 15 13 10 18 18 C 1.50700 * 109.47125 * 120.00168 * 15 13 10 19 19 H 1.08001 * 119.99762 * 0.02562 * 18 15 13 20 20 C 1.37881 * 120.00400 * 179.97438 * 18 15 13 21 21 N 1.31510 * 119.99785 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00049 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47227 * 120.00208 * 22 20 18 25 25 H 1.48504 * 109.46981 * 240.00105 * 22 20 18 26 26 H 1.08995 * 109.47194 * 185.74865 * 1 2 3 27 27 H 1.09003 * 109.47221 * 305.74867 * 1 2 3 28 28 H 1.09000 * 109.47423 * 65.75154 * 1 2 3 29 29 H 1.09002 * 109.46777 * 240.00611 * 2 1 3 30 30 H 1.08992 * 109.47404 * 120.00640 * 2 1 3 31 31 H 1.09000 * 109.46922 * 185.79585 * 4 3 2 32 32 H 1.09000 * 109.46842 * 299.99760 * 5 4 3 33 33 H 1.08997 * 109.47242 * 59.99738 * 5 4 3 34 34 H 1.09000 * 109.46929 * 299.99623 * 6 5 4 35 35 H 1.08994 * 109.47254 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46774 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47104 * 60.00351 * 7 6 5 38 38 H 1.09000 * 109.47176 * 300.00276 * 8 7 6 39 39 H 1.09000 * 109.47298 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47521 * 300.00609 * 9 4 3 41 41 H 1.09006 * 109.47014 * 60.00783 * 9 4 3 42 42 H 1.09003 * 109.47336 * 269.99340 * 14 13 10 43 43 H 1.08999 * 109.47679 * 29.99578 * 14 13 10 44 44 H 1.09002 * 109.47356 * 150.00037 * 14 13 10 45 45 H 1.09002 * 109.47163 * 60.00100 * 17 15 13 46 46 H 1.09003 * 109.47212 * 300.00269 * 17 15 13 47 47 H 1.08996 * 109.47310 * 180.02562 * 17 15 13 48 48 H 0.96997 * 120.00113 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1998 2.0940 -1.2669 5 6 0.8390 2.3025 -1.9344 6 6 1.0286 3.0464 -3.2579 7 6 1.9289 2.2230 -4.1812 8 6 3.2897 2.0146 -3.5138 9 6 3.1003 1.2713 -2.1905 10 16 2.3651 2.1368 1.4322 11 8 1.6065 1.4697 2.4317 12 8 2.2663 3.5324 1.1839 13 7 3.9570 1.8340 1.7734 14 6 4.3261 0.6530 2.5577 15 6 4.9960 2.7469 1.2909 16 1 4.5338 3.5604 0.7316 17 6 5.9613 1.9855 0.3803 18 6 5.7531 3.3119 2.4650 19 1 5.4872 3.0197 3.4701 20 6 6.7861 4.2010 2.2561 21 7 7.1109 4.5557 1.0321 22 14 7.7249 4.9007 3.7115 23 1 7.1693 4.3459 4.9720 24 1 9.1590 4.5322 3.5989 25 1 7.5932 6.3798 3.7207 26 1 -0.3633 -1.0224 0.1029 27 1 -0.3634 0.6004 0.8341 28 1 -0.3634 0.4220 -0.9370 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.6629 3.0621 -1.0760 32 1 0.3759 1.3344 -2.1253 33 1 0.1975 2.8887 -1.2764 34 1 1.4919 4.0145 -3.0674 35 1 0.0592 3.1945 -3.7336 36 1 2.0644 2.7532 -5.1239 37 1 1.4656 1.2550 -4.3717 38 1 3.7530 2.9827 -3.3233 39 1 3.9309 1.4277 -4.1714 40 1 4.0697 1.1228 -1.7150 41 1 2.6371 0.3032 -2.3815 42 1 4.3369 0.9091 3.6171 43 1 3.5998 -0.1408 2.3832 44 1 5.3166 0.3117 2.2564 45 1 5.4137 1.5769 -0.4690 46 1 6.4235 1.1722 0.9398 47 1 6.7347 2.6647 0.0216 48 1 7.8373 5.1815 0.8851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407975731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:08 Heat of formation + Delta-G solvation = -111.487573 kcal Electronic energy + Delta-G solvation = -27885.916093 eV Core-core repulsion = 24294.179949 eV Total energy + Delta-G solvation = -3591.736144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.06678 -38.40617 -37.89513 -36.88994 -36.41136 -34.54092 -31.92697 -31.57191 -30.91534 -29.42190 -27.30554 -27.00169 -24.38848 -23.34361 -22.96783 -22.30816 -20.53171 -19.83303 -18.82276 -18.58223 -18.14668 -17.46133 -16.77643 -16.19534 -15.70606 -15.37963 -15.14753 -15.13138 -14.84245 -14.67633 -14.48872 -14.29926 -14.06794 -13.73015 -13.41364 -13.28463 -13.25396 -13.13307 -13.05801 -13.00087 -12.94724 -12.84023 -12.76523 -12.60222 -12.26045 -12.22968 -12.14761 -11.95974 -11.84000 -11.53702 -11.24517 -11.20519 -11.15622 -11.01928 -10.52052 -9.96172 -9.63363 -8.13126 -6.26761 -0.35693 1.39150 1.41985 1.52639 2.02067 2.41039 2.56561 3.14635 3.34777 3.63930 3.87494 3.90051 4.07804 4.15334 4.24728 4.36492 4.40413 4.44649 4.52191 4.58931 4.64517 4.65873 4.66369 4.74973 4.79737 4.87584 4.95624 5.00083 5.04594 5.13031 5.15026 5.18311 5.21468 5.26035 5.30138 5.35501 5.44396 5.46091 5.51296 5.60112 5.63269 5.67680 5.85462 5.89839 6.15179 6.30013 6.80753 7.42147 8.90941 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.005341 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.312151 B = 5240.725428 C = 6217.710652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 N -0.994 5.994 4 C 0.148 3.852 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.122 4.122 10 S 2.782 3.218 11 O -1.006 7.006 12 O -1.019 7.019 13 N -0.999 5.999 14 C 0.105 3.895 15 C 0.276 3.724 16 H 0.020 0.980 17 C -0.133 4.133 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 0.954 3.046 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.284 1.284 26 H 0.087 0.913 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 -11.815 -10.796 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.835 5.835 4 C 0.042 3.958 5 C -0.163 4.163 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.158 4.158 9 C -0.161 4.161 10 S 2.794 3.206 11 O -0.990 6.990 12 O -1.003 7.003 13 N -0.840 5.840 14 C -0.040 4.040 15 C 0.172 3.828 16 H 0.038 0.962 17 C -0.193 4.193 18 C -0.579 4.579 19 H 0.071 0.929 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.780 3.220 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.210 1.210 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.542 -11.210 -10.309 18.523 hybrid contribution 1.002 0.873 0.981 1.652 sum -9.540 -10.337 -9.328 16.878 Atomic orbital electron populations 1.22412 0.95437 1.03295 1.02306 1.21477 0.95080 0.80346 1.04302 1.57997 1.79880 1.24664 1.20910 1.20953 0.97399 0.94533 0.82921 1.22041 0.95559 1.02108 0.96637 1.21564 1.00863 0.98502 0.94919 1.21520 0.94517 1.00889 0.97979 1.21531 0.98265 1.00147 0.95887 1.21896 0.99148 0.99821 0.95262 1.01634 0.72968 0.72484 0.73490 1.93495 1.70431 1.76643 1.58443 1.93519 1.86904 1.33726 1.86129 1.57681 1.24402 1.35532 1.66427 1.21321 1.02360 0.85673 0.94682 1.18349 0.84959 0.86307 0.93182 0.96249 1.21932 1.00317 0.99443 0.97579 1.21685 1.16403 1.26369 0.93489 0.92932 1.25621 0.97818 0.96380 0.98311 1.69973 1.30207 1.34091 1.20833 0.85568 0.78664 0.77976 0.79801 1.19626 1.19731 1.20955 0.89402 0.94679 0.90611 0.87341 0.90634 0.92315 0.88644 0.93452 0.93498 0.90002 0.90997 0.90200 0.93680 0.90199 0.92436 0.88964 0.94404 0.90268 0.90274 0.94187 0.93984 0.91558 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.83 71.98 0.71 -2.80 16 2 C 0.11 2.48 5.66 86.38 0.49 2.97 16 3 N -0.99 -30.02 2.79 -493.42 -1.37 -31.39 16 4 C 0.15 4.24 2.46 44.99 0.11 4.35 16 5 C -0.12 -2.87 4.59 30.59 0.14 -2.73 16 6 C -0.12 -2.40 5.92 30.60 0.18 -2.22 16 7 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 8 C -0.12 -2.49 5.92 30.58 0.18 -2.31 16 9 C -0.12 -2.82 5.04 30.58 0.15 -2.67 16 10 S 2.78 114.72 5.99 -56.49 -0.34 114.38 16 11 O -1.01 -42.61 16.06 -128.00 -2.06 -44.67 16 12 O -1.02 -51.08 15.33 -128.00 -1.96 -53.04 16 13 N -1.00 -42.56 3.12 -520.47 -1.62 -44.18 16 14 C 0.11 3.73 9.53 127.77 1.22 4.95 16 15 C 0.28 13.87 2.62 44.25 0.12 13.99 16 16 H 0.02 1.13 6.91 -2.39 -0.02 1.11 16 17 C -0.13 -5.98 8.95 71.98 0.64 -5.34 16 18 C -0.54 -30.00 8.37 25.60 0.21 -29.78 16 19 H 0.05 2.94 7.65 -2.91 -0.02 2.92 16 20 C 0.02 1.03 5.30 84.66 0.45 1.48 16 21 N -0.91 -51.66 11.32 21.45 0.24 -51.42 16 22 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 0.89 7.98 -2.39 -0.02 0.87 16 28 H 0.08 1.30 5.35 -2.39 -0.01 1.29 16 29 H 0.11 1.73 6.17 -2.39 -0.01 1.72 16 30 H 0.08 1.67 7.30 -2.39 -0.02 1.66 16 31 H 0.06 2.16 7.02 -2.39 -0.02 2.15 16 32 H 0.10 1.71 5.66 -2.39 -0.01 1.69 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.53 6.21 -2.39 -0.01 1.52 16 41 H 0.09 1.60 6.54 -2.38 -0.02 1.59 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 2.26 7.41 -2.39 -0.02 2.24 16 44 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 45 H 0.04 1.54 6.21 -2.39 -0.01 1.52 16 46 H 0.04 1.76 6.66 -2.39 -0.02 1.74 16 47 H 0.07 3.35 6.07 -2.39 -0.01 3.33 16 48 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.71 366.74 0.63 -69.07 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.93 Total: 17.01 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.79 Total: -21.80 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -2.76 Total: -127.00 kcal Atomic # 8 Polarization: -93.69 SS G_CDS: -4.02 Total: -97.71 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 114.72 SS G_CDS: -0.34 Total: 114.38 kcal Total: -69.71 0.63 -69.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.414 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds