Wall clock time and date at job start Tue Mar 31 2020 11:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46578 * 2 1 4 4 C 1.44047 * 111.00366 * 306.66964 * 3 2 1 5 5 C 1.54756 * 110.37212 * 220.51223 * 4 3 2 6 6 C 1.54935 * 109.76645 * 321.90658 * 5 4 3 7 7 N 1.43622 * 116.03710 * 318.50243 * 6 5 4 8 8 S 1.65602 * 120.55939 * 269.68022 * 7 6 5 9 9 O 1.42100 * 104.27666 * 206.07335 * 8 7 6 10 10 O 1.42098 * 104.27842 * 333.93373 * 8 7 6 11 11 C 1.81403 * 104.44903 * 90.00317 * 8 7 6 12 12 C 1.53002 * 109.47106 * 179.97438 * 11 8 7 13 13 C 1.53000 * 109.47084 * 300.00007 * 12 11 8 14 14 C 1.52995 * 109.46763 * 60.00315 * 12 11 8 15 15 C 1.50696 * 109.46724 * 180.02562 * 12 11 8 16 16 H 1.07999 * 120.00575 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99823 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99956 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00023 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.47242 * 89.99861 * 19 17 15 21 21 H 1.48503 * 109.46977 * 209.99797 * 19 17 15 22 22 H 1.48495 * 109.47423 * 329.99519 * 19 17 15 23 23 C 1.50184 * 118.87667 * 89.66359 * 7 6 5 24 24 C 1.46187 * 110.99893 * 64.37689 * 3 2 1 25 25 H 1.08996 * 109.47553 * 305.12820 * 1 2 3 26 26 H 1.08997 * 109.47243 * 65.13982 * 1 2 3 27 27 H 1.09003 * 109.46313 * 185.12714 * 1 2 3 28 28 H 1.09001 * 109.47415 * 240.00710 * 2 1 3 29 29 H 1.08998 * 109.47325 * 120.00077 * 2 1 3 30 30 H 1.09004 * 109.33435 * 340.91344 * 4 3 2 31 31 H 1.08997 * 109.33824 * 100.58012 * 4 3 2 32 32 H 1.08994 * 109.54796 * 201.72185 * 5 4 3 33 33 H 1.09002 * 109.24679 * 81.90017 * 5 4 3 34 34 H 1.08992 * 108.13621 * 196.86519 * 6 5 4 35 35 H 1.08999 * 108.13617 * 80.14262 * 6 5 4 36 36 H 1.09001 * 109.46773 * 300.00137 * 11 8 7 37 37 H 1.09006 * 109.46652 * 60.00009 * 11 8 7 38 38 H 1.08997 * 109.47020 * 60.00325 * 13 12 11 39 39 H 1.08999 * 109.46715 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47188 * 300.00206 * 13 12 11 41 41 H 1.09000 * 109.47341 * 59.99970 * 14 12 11 42 42 H 1.08999 * 109.47042 * 179.97438 * 14 12 11 43 43 H 1.08997 * 109.47367 * 299.99690 * 14 12 11 44 44 H 0.96995 * 120.00150 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.97151 * 51.09038 * 23 7 6 46 46 H 1.09004 * 109.96662 * 172.40044 * 23 7 6 47 47 H 1.09006 * 108.49992 * 25.70324 * 24 3 2 48 48 H 1.09002 * 108.49721 * 268.25311 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.4344 2.1395 -1.0786 5 6 2.4940 3.0619 -1.7277 6 6 3.4243 3.6426 -0.6333 7 7 2.7828 4.0651 0.5803 8 16 2.2411 5.6210 0.7486 9 8 2.2607 5.8491 2.1510 10 8 3.0660 6.3761 -0.1281 11 6 0.5346 5.5750 0.1350 12 6 -0.0830 6.9708 0.2402 13 6 -0.0788 7.4215 1.7023 14 6 0.7344 7.9547 -0.5992 15 6 -1.5008 6.9324 -0.2690 16 1 -1.9197 6.0051 -0.6310 17 6 -2.2634 8.0811 -0.2727 18 7 -1.7535 9.2103 0.1686 19 14 -4.0210 8.0334 -0.9032 20 1 -4.9416 7.7230 0.2200 21 1 -4.3750 9.3540 -1.4828 22 1 -4.1439 6.9853 -1.9480 23 6 2.6113 3.0721 1.6938 24 6 1.6377 2.0757 1.2306 25 1 -0.3634 0.5913 0.8404 26 1 -0.3633 0.4320 -0.9324 27 1 -0.3632 -1.0236 0.0918 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.0436 1.4524 -1.8292 31 1 0.6201 2.7515 -0.6908 32 1 1.9958 3.8781 -2.2507 33 1 3.0860 2.4848 -2.4381 34 1 3.9507 4.4989 -1.0547 35 1 4.1644 2.8837 -0.3793 36 1 0.5316 5.2534 -0.9065 37 1 -0.0478 4.8743 0.7333 38 1 0.9466 7.4492 2.0710 39 1 -0.5183 8.4161 1.7771 40 1 -0.6610 6.7205 2.3003 41 1 0.7314 7.6336 -1.6408 42 1 0.2942 8.9490 -0.5246 43 1 1.7598 7.9824 -0.2305 44 1 -2.2900 10.0183 0.1664 45 1 3.5636 2.5887 1.9115 46 1 2.2349 3.5738 2.5853 47 1 1.5026 1.3326 2.0166 48 1 0.6834 2.5756 1.0647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408456660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:13 Heat of formation + Delta-G solvation = -54.836980 kcal Electronic energy + Delta-G solvation = -27749.946818 eV Core-core repulsion = 24160.667229 eV Total energy + Delta-G solvation = -3589.279590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72450 -36.59492 -36.27407 -35.78838 -35.19195 -32.59609 -31.66834 -30.84581 -27.25728 -26.74192 -25.71090 -25.67433 -25.22452 -23.41492 -21.59471 -19.88907 -19.33226 -18.28454 -17.40181 -16.35404 -16.04916 -15.84549 -15.56185 -15.13877 -14.92960 -14.72852 -14.36960 -14.11224 -13.51035 -13.32423 -13.01762 -12.90999 -12.77286 -12.50427 -12.29572 -12.07727 -11.97494 -11.90571 -11.64109 -11.37538 -11.25852 -11.09089 -11.07629 -10.94487 -10.89126 -10.71769 -10.66453 -10.42477 -10.33857 -10.22954 -10.08320 -9.64604 -9.54633 -8.88999 -8.57278 -8.53401 -8.40542 -6.03707 -4.15655 0.89636 3.12728 3.24265 3.31773 3.33449 3.81791 4.33481 4.44320 4.60957 4.72561 4.77674 4.89766 4.99331 5.06617 5.16724 5.21433 5.22879 5.28926 5.40749 5.46468 5.56777 5.59919 5.66776 5.71478 5.76914 5.77496 5.90844 5.97050 5.98074 6.03009 6.20385 6.34949 6.40394 6.71031 6.80317 6.86911 6.91935 6.92811 7.02439 7.06656 7.31878 7.51025 7.67286 7.98280 8.09791 8.33182 8.82625 9.49621 10.97569 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.005068 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.002135 B = 5523.267037 C = 6540.793683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.048 3.952 3 N -0.509 5.509 4 C 0.041 3.959 5 C -0.137 4.137 6 C 0.127 3.873 7 N -1.001 6.001 8 S 2.592 3.408 9 O -0.965 6.965 10 O -0.962 6.962 11 C -0.582 4.582 12 C 0.083 3.917 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.501 4.501 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.128 3.872 24 C 0.021 3.979 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.027 0.973 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -16.839 -0.392 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.080 4.080 3 N -0.231 5.231 4 C -0.088 4.088 5 C -0.177 4.177 6 C 0.000 4.000 7 N -0.836 5.836 8 S 2.691 3.309 9 O -0.955 6.955 10 O -0.953 6.953 11 C -0.715 4.715 12 C 0.080 3.920 13 C -0.220 4.220 14 C -0.220 4.220 15 C -0.540 4.540 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.003 3.997 24 C -0.109 4.109 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.090 0.910 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.991 -15.972 -0.052 17.860 hybrid contribution -2.610 -0.521 -0.655 2.741 sum 5.381 -16.493 -0.707 17.363 Atomic orbital electron populations 1.22522 0.97902 1.02361 1.02570 1.22367 0.93007 0.89881 1.02753 1.62257 1.56556 1.01434 1.02865 1.22312 0.96086 0.96125 0.94290 1.22771 0.98280 0.98750 0.97948 1.20637 0.94586 1.00532 0.84253 1.57882 1.74793 1.29442 1.21486 1.05684 0.78236 0.72181 0.74814 1.93517 1.87755 1.83234 1.31015 1.93519 1.65965 1.67897 1.67875 1.30612 1.20245 1.09764 1.10882 1.17914 0.95712 0.84447 0.93886 1.22264 0.98889 1.04869 0.96025 1.22257 0.96658 1.04450 0.98658 1.20927 0.95673 0.95233 1.42168 0.92463 1.24932 0.98241 0.95441 0.95083 1.69801 1.36385 0.99682 1.46266 0.86562 0.84762 0.77437 0.79021 1.20676 1.21090 1.20021 1.21009 1.00384 0.89175 0.89120 1.21625 0.98246 0.97500 0.93490 0.92297 0.92213 0.92215 0.90572 0.90697 0.91864 0.92914 0.91504 0.90615 0.90441 0.90476 0.86626 0.86927 0.95394 0.88690 0.94589 0.94530 0.88702 0.95395 0.92749 0.90077 0.88001 0.90994 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 9.27 37.16 0.34 -1.25 16 2 C 0.05 0.39 5.78 -3.82 -0.02 0.37 16 3 N -0.51 -5.14 4.38 -240.16 -1.05 -6.19 16 4 C 0.04 0.45 4.37 -4.42 -0.02 0.43 16 5 C -0.14 -1.57 6.63 -24.79 -0.16 -1.73 16 6 C 0.13 1.65 5.26 -4.55 -0.02 1.63 16 7 N -1.00 -14.53 2.85 -115.67 -0.33 -14.86 16 8 S 2.59 49.25 4.49 -107.50 -0.48 48.77 16 9 O -0.96 -20.34 14.26 -57.54 -0.82 -21.16 16 10 O -0.96 -20.60 14.18 -57.54 -0.82 -21.42 16 11 C -0.58 -11.45 5.12 37.16 0.19 -11.26 16 12 C 0.08 2.01 0.52 -155.66 -0.08 1.92 16 13 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 14 C -0.16 -4.04 7.78 37.15 0.29 -3.75 16 15 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 18 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 19 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.13 1.53 6.33 -4.94 -0.03 1.50 16 24 C 0.02 0.22 3.83 -7.17 -0.03 0.19 16 25 H 0.06 0.53 7.02 -51.93 -0.36 0.16 16 26 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 30 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 31 H 0.05 0.65 6.61 -51.93 -0.34 0.31 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.09 6.83 -51.93 -0.35 0.74 16 35 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 36 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 37 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 39 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 43 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 1.26 6.95 -51.93 -0.36 0.90 16 47 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16 48 H 0.05 0.57 6.51 -51.93 -0.34 0.24 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -30.74 359.12 -10.42 -41.16 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.21 Total: 3.75 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 0.38 Total: -27.45 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.86 Total: -44.67 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.64 Total: -42.58 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.48 Total: 48.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.74 -10.42 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408456660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.679 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds