Wall clock time and date at job start Tue Mar 31 2020 12:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47509 * 2 1 4 4 C 1.46494 * 120.00060 * 286.26529 * 3 2 1 5 5 C 1.50700 * 109.47453 * 271.90680 * 4 3 2 6 6 H 1.07997 * 119.99713 * 4.65238 * 5 4 3 7 7 C 1.37879 * 120.00188 * 184.66160 * 5 4 3 8 8 N 1.31513 * 120.00288 * 5.39924 * 7 5 4 9 9 Si 1.86795 * 119.99783 * 185.40220 * 7 5 4 10 10 H 1.48507 * 109.47068 * 94.97444 * 9 7 5 11 11 H 1.48507 * 109.47111 * 214.96935 * 9 7 5 12 12 H 1.48501 * 109.47510 * 334.97522 * 9 7 5 13 13 S 1.65600 * 119.99843 * 106.26515 * 3 2 1 14 14 O 1.42094 * 106.40238 * 133.29781 * 13 3 2 15 15 O 1.42106 * 106.40197 * 0.37301 * 13 3 2 16 16 N 1.65607 * 107.21687 * 246.83691 * 13 3 2 17 17 C 1.46499 * 119.99988 * 59.48314 * 16 13 3 18 18 C 1.52996 * 109.47179 * 38.18265 * 17 16 13 19 19 C 1.53002 * 109.47276 * 278.18100 * 17 16 13 20 20 C 1.53003 * 109.47321 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.46577 * 60.00126 * 20 19 17 22 22 C 1.52993 * 109.47185 * 299.99826 * 21 20 19 23 23 C 1.53000 * 109.46950 * 158.18432 * 17 16 13 24 24 H 1.08997 * 109.47172 * 60.00140 * 23 17 16 25 25 C 1.53002 * 109.46860 * 299.99922 * 23 17 16 26 26 H 1.09004 * 109.47429 * 47.08917 * 1 2 3 27 27 H 1.09002 * 109.47551 * 167.08914 * 1 2 3 28 28 H 1.09002 * 109.47268 * 287.09412 * 1 2 3 29 29 H 1.09001 * 109.46791 * 240.00363 * 2 1 3 30 30 H 1.08994 * 109.47455 * 120.00741 * 2 1 3 31 31 H 1.09003 * 109.47321 * 31.90997 * 4 3 2 32 32 H 1.08999 * 109.47465 * 151.90411 * 4 3 2 33 33 H 0.96995 * 120.00497 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00106 * 239.48491 * 16 13 3 35 35 H 1.09001 * 109.47140 * 299.99655 * 18 17 16 36 36 H 1.09000 * 109.47027 * 60.00060 * 18 17 16 37 37 H 1.09005 * 109.47364 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47184 * 60.00260 * 19 17 16 39 39 H 1.08997 * 109.47405 * 300.00202 * 19 17 16 40 40 H 1.08997 * 109.47128 * 300.00472 * 20 19 17 41 41 H 1.09000 * 109.47137 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46758 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47109 * 60.00334 * 21 20 19 44 44 H 1.09001 * 109.47176 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47512 * 300.00262 * 22 21 20 46 46 H 1.09005 * 109.46903 * 299.99703 * 25 23 17 47 47 H 1.08998 * 109.47358 * 60.00132 * 25 23 17 48 48 H 1.09000 * 109.46864 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9276 2.1902 -1.2179 5 6 3.1617 1.9768 -2.0560 6 1 3.9009 1.2500 -1.7532 7 6 3.3472 2.7096 -3.2091 8 7 2.5027 3.6678 -3.5223 9 14 4.7979 2.3410 -4.3266 10 1 4.3690 1.4151 -5.4056 11 1 5.2936 3.6054 -4.9275 12 1 5.8844 1.7096 -3.5355 13 16 2.6731 2.0278 1.3768 14 8 3.8761 2.6739 0.9838 15 8 2.6262 1.0050 2.3622 16 7 1.6482 3.2218 1.8930 17 6 0.2580 2.9007 2.2255 18 6 0.2020 1.5416 2.9258 19 6 -0.5742 2.8481 0.9427 20 6 -2.0259 2.5121 1.2899 21 6 -2.5899 3.5881 2.2200 22 6 -1.7578 3.6407 3.5027 23 6 -0.3057 3.9771 3.1552 24 1 -0.2658 4.9454 2.6563 25 6 0.5266 4.0298 4.4381 26 1 -0.3634 0.6997 -0.7527 27 1 -0.3634 -1.0017 -0.2296 28 1 -0.3634 0.3021 0.9823 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 1.0463 1.8932 -1.7866 32 1 1.8485 3.2436 -0.9493 33 1 2.6329 4.1831 -4.3337 34 1 1.9682 4.1338 1.9751 35 1 0.6036 0.7747 2.2634 36 1 0.7949 1.5791 3.8398 37 1 -0.8322 1.3028 3.1737 38 1 -0.1726 2.0812 0.2803 39 1 -0.5343 3.8163 0.4437 40 1 -2.0654 1.5437 1.7887 41 1 -2.6187 2.4741 0.3760 42 1 -3.6242 3.3490 2.4670 43 1 -2.5504 4.5565 1.7212 44 1 -2.1598 4.4070 4.1655 45 1 -1.7973 2.6723 4.0015 46 1 0.4866 3.0614 4.9370 47 1 1.5609 4.2687 4.1907 48 1 0.1247 4.7963 5.1006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416512458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:31 Heat of formation + Delta-G solvation = -85.349342 kcal Electronic energy + Delta-G solvation = -28406.540841 eV Core-core repulsion = 24815.938136 eV Total energy + Delta-G solvation = -3590.602705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97634 -36.60279 -36.14190 -35.08146 -34.19761 -32.75131 -32.37581 -30.18093 -29.27584 -27.55071 -26.64309 -25.60855 -23.41644 -22.20253 -21.37180 -21.20102 -18.71189 -18.39114 -17.28801 -17.02890 -16.28496 -16.08474 -15.33404 -15.04908 -14.48107 -14.36625 -13.99853 -13.67558 -13.57871 -13.37389 -13.03539 -12.92770 -12.59842 -12.50376 -12.20100 -12.08928 -11.91880 -11.69447 -11.55037 -11.35851 -11.34157 -11.20195 -11.11567 -10.92569 -10.90125 -10.78966 -10.53712 -10.49308 -10.38026 -10.30006 -10.20369 -9.98081 -9.82031 -9.58988 -9.00167 -8.42138 -8.01799 -6.04786 -4.06673 1.36774 3.32725 3.39620 3.45850 3.55464 4.17956 4.47559 4.63294 4.69390 4.83177 5.07608 5.16248 5.22458 5.25176 5.32346 5.36137 5.44758 5.46499 5.49620 5.66254 5.67719 5.72276 5.74664 5.78217 5.84464 5.95149 5.98393 6.05225 6.07094 6.11409 6.20944 6.26608 6.29743 6.31769 6.34740 6.46663 6.61854 6.65614 6.70954 6.75622 7.20139 7.33859 7.47375 7.66960 7.95298 8.23689 8.96683 9.58066 11.03630 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.005161 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.106306 B = 5424.405742 C = 5731.603760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 N -0.994 5.994 4 C 0.260 3.740 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.784 3.216 14 O -0.972 6.972 15 O -1.001 7.001 16 N -1.121 6.121 17 C 0.193 3.807 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.087 4.087 24 H 0.074 0.926 25 C -0.150 4.150 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -1.457 12.929 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.010 4.010 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.793 3.207 14 O -0.955 6.955 15 O -0.984 6.984 16 N -0.879 5.879 17 C 0.104 3.896 18 C -0.243 4.243 19 C -0.199 4.199 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.107 4.107 24 H 0.092 0.908 25 C -0.207 4.207 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.505 -1.770 13.193 16.957 hybrid contribution 0.549 0.588 -1.018 1.297 sum -9.956 -1.182 12.175 15.772 Atomic orbital electron populations 1.22634 0.97318 1.01860 1.02573 1.21146 0.93601 0.83212 1.03041 1.57680 1.78532 1.20425 1.26966 1.18988 0.97499 0.89278 0.80482 1.21551 1.06024 1.21798 1.06962 0.91998 1.24918 0.96596 0.94590 0.97959 1.69921 1.37361 1.20907 1.25501 0.86521 0.82820 0.77760 0.80593 1.20759 1.21199 1.19692 1.01835 0.73100 0.72898 0.72908 1.93634 1.43081 1.76163 1.82618 1.93537 1.87275 1.58261 1.59366 1.56114 1.22770 1.25189 1.83832 1.19976 0.80453 0.95097 0.94073 1.22854 1.02564 0.96061 1.02781 1.22604 0.94916 1.04596 0.97807 1.21557 0.95919 0.98699 0.99297 1.21560 0.98539 0.99641 0.96076 1.21636 0.94108 1.01845 0.97475 1.21322 0.94882 0.98541 0.95906 0.90765 1.21890 1.00108 1.01837 0.96860 0.91288 0.92376 0.91796 0.90476 0.90219 0.94922 0.94665 0.92826 0.75613 0.89979 0.90846 0.91229 0.88111 0.91253 0.91708 0.91865 0.92290 0.91994 0.92063 0.91460 0.92134 0.92387 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.35 37.15 0.31 -2.26 16 2 C 0.12 1.97 5.70 -4.05 -0.02 1.95 16 3 N -0.99 -19.88 1.81 -115.67 -0.21 -20.09 16 4 C 0.26 6.20 4.26 -5.20 -0.02 6.18 16 5 C -0.52 -14.51 9.29 -34.44 -0.32 -14.83 16 6 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 7 C 0.06 1.72 5.45 -17.82 -0.10 1.62 16 8 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 S 2.78 55.12 5.44 -107.50 -0.58 54.53 16 14 O -0.97 -23.79 17.77 -57.17 -1.02 -24.81 16 15 O -1.00 -19.65 12.96 -57.17 -0.74 -20.39 16 16 N -1.12 -17.68 4.89 0.54 0.00 -17.67 16 17 C 0.19 2.57 0.64 -131.82 -0.08 2.48 16 18 C -0.19 -2.45 5.28 37.16 0.20 -2.26 16 19 C -0.16 -2.19 4.45 -26.73 -0.12 -2.30 16 20 C -0.12 -1.27 5.44 -26.73 -0.15 -1.42 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 22 C -0.11 -1.06 4.93 -26.71 -0.13 -1.19 16 23 C -0.09 -0.96 2.06 -90.59 -0.19 -1.14 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.15 -1.58 8.68 37.16 0.32 -1.26 16 26 H 0.07 1.03 5.93 -51.93 -0.31 0.72 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.81 3.61 -51.93 -0.19 0.62 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.28 6.55 -51.93 -0.34 0.94 16 31 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 32 H 0.04 0.89 8.01 -51.93 -0.42 0.48 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.41 5.95 8.37 -34.48 -0.29 5.66 16 35 H 0.08 1.20 2.83 -51.93 -0.15 1.05 16 36 H 0.07 1.01 6.10 -51.93 -0.32 0.70 16 37 H 0.07 0.76 4.81 -51.93 -0.25 0.51 16 38 H 0.10 1.52 1.79 -51.93 -0.09 1.43 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 46 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 47 H 0.06 0.65 7.36 -51.93 -0.38 0.27 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -32.06 348.19 -9.47 -41.53 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.43 Total: 5.60 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.46 Total: -15.74 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.53 Total: -62.85 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.76 Total: -45.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 55.12 SS G_CDS: -0.58 Total: 54.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.06 -9.47 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416512458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.818 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds