Wall clock time and date at job start Tue Mar 31 2020 12:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47509 * 2 1 4 4 C 1.46494 * 120.00060 * 286.26529 * 3 2 1 5 5 C 1.50700 * 109.47453 * 271.90680 * 4 3 2 6 6 H 1.07997 * 119.99713 * 4.65238 * 5 4 3 7 7 C 1.37879 * 120.00188 * 184.66160 * 5 4 3 8 8 N 1.31513 * 120.00288 * 5.39924 * 7 5 4 9 9 Si 1.86795 * 119.99783 * 185.40220 * 7 5 4 10 10 H 1.48507 * 109.47068 * 94.97444 * 9 7 5 11 11 H 1.48507 * 109.47111 * 214.96935 * 9 7 5 12 12 H 1.48501 * 109.47510 * 334.97522 * 9 7 5 13 13 S 1.65600 * 119.99843 * 106.26515 * 3 2 1 14 14 O 1.42094 * 106.40238 * 133.29781 * 13 3 2 15 15 O 1.42106 * 106.40197 * 0.37301 * 13 3 2 16 16 N 1.65607 * 107.21687 * 246.83691 * 13 3 2 17 17 C 1.46499 * 119.99988 * 59.48314 * 16 13 3 18 18 C 1.52996 * 109.47179 * 38.18265 * 17 16 13 19 19 C 1.53002 * 109.47276 * 278.18100 * 17 16 13 20 20 C 1.53003 * 109.47321 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.46577 * 60.00126 * 20 19 17 22 22 C 1.52993 * 109.47185 * 299.99826 * 21 20 19 23 23 C 1.53000 * 109.46950 * 158.18432 * 17 16 13 24 24 H 1.08997 * 109.47172 * 60.00140 * 23 17 16 25 25 C 1.53002 * 109.46860 * 299.99922 * 23 17 16 26 26 H 1.09004 * 109.47429 * 47.08917 * 1 2 3 27 27 H 1.09002 * 109.47551 * 167.08914 * 1 2 3 28 28 H 1.09002 * 109.47268 * 287.09412 * 1 2 3 29 29 H 1.09001 * 109.46791 * 240.00363 * 2 1 3 30 30 H 1.08994 * 109.47455 * 120.00741 * 2 1 3 31 31 H 1.09003 * 109.47321 * 31.90997 * 4 3 2 32 32 H 1.08999 * 109.47465 * 151.90411 * 4 3 2 33 33 H 0.96995 * 120.00497 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00106 * 239.48491 * 16 13 3 35 35 H 1.09001 * 109.47140 * 299.99655 * 18 17 16 36 36 H 1.09000 * 109.47027 * 60.00060 * 18 17 16 37 37 H 1.09005 * 109.47364 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47184 * 60.00260 * 19 17 16 39 39 H 1.08997 * 109.47405 * 300.00202 * 19 17 16 40 40 H 1.08997 * 109.47128 * 300.00472 * 20 19 17 41 41 H 1.09000 * 109.47137 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46758 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47109 * 60.00334 * 21 20 19 44 44 H 1.09001 * 109.47176 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47512 * 300.00262 * 22 21 20 46 46 H 1.09005 * 109.46903 * 299.99703 * 25 23 17 47 47 H 1.08998 * 109.47358 * 60.00132 * 25 23 17 48 48 H 1.09000 * 109.46864 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9276 2.1902 -1.2179 5 6 3.1617 1.9768 -2.0560 6 1 3.9009 1.2500 -1.7532 7 6 3.3472 2.7096 -3.2091 8 7 2.5027 3.6678 -3.5223 9 14 4.7979 2.3410 -4.3266 10 1 4.3690 1.4151 -5.4056 11 1 5.2936 3.6054 -4.9275 12 1 5.8844 1.7096 -3.5355 13 16 2.6731 2.0278 1.3768 14 8 3.8761 2.6739 0.9838 15 8 2.6262 1.0050 2.3622 16 7 1.6482 3.2218 1.8930 17 6 0.2580 2.9007 2.2255 18 6 0.2020 1.5416 2.9258 19 6 -0.5742 2.8481 0.9427 20 6 -2.0259 2.5121 1.2899 21 6 -2.5899 3.5881 2.2200 22 6 -1.7578 3.6407 3.5027 23 6 -0.3057 3.9771 3.1552 24 1 -0.2658 4.9454 2.6563 25 6 0.5266 4.0298 4.4381 26 1 -0.3634 0.6997 -0.7527 27 1 -0.3634 -1.0017 -0.2296 28 1 -0.3634 0.3021 0.9823 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 1.0463 1.8932 -1.7866 32 1 1.8485 3.2436 -0.9493 33 1 2.6329 4.1831 -4.3337 34 1 1.9682 4.1338 1.9751 35 1 0.6036 0.7747 2.2634 36 1 0.7949 1.5791 3.8398 37 1 -0.8322 1.3028 3.1737 38 1 -0.1726 2.0812 0.2803 39 1 -0.5343 3.8163 0.4437 40 1 -2.0654 1.5437 1.7887 41 1 -2.6187 2.4741 0.3760 42 1 -3.6242 3.3490 2.4670 43 1 -2.5504 4.5565 1.7212 44 1 -2.1598 4.4070 4.1655 45 1 -1.7973 2.6723 4.0015 46 1 0.4866 3.0614 4.9370 47 1 1.5609 4.2687 4.1907 48 1 0.1247 4.7963 5.1006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416512458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:30 Heat of formation + Delta-G solvation = -106.713947 kcal Electronic energy + Delta-G solvation = -28407.467280 eV Core-core repulsion = 24815.938136 eV Total energy + Delta-G solvation = -3591.529144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98070 -38.21947 -37.76028 -36.79504 -35.26217 -34.72930 -33.37327 -31.63609 -30.46732 -28.59100 -28.42973 -26.52098 -25.12598 -23.55141 -22.59803 -22.10631 -20.06374 -19.58187 -18.91724 -18.47310 -18.21949 -17.56291 -16.76687 -16.26544 -16.10575 -15.59743 -15.09608 -14.84287 -14.83363 -14.65643 -14.52089 -14.10646 -13.91230 -13.76197 -13.54998 -13.42851 -13.19631 -13.10003 -12.92065 -12.87672 -12.80854 -12.68079 -12.51229 -12.40987 -12.29750 -12.07295 -11.92975 -11.87032 -11.72984 -11.57022 -11.41908 -11.34067 -11.09318 -10.75733 -10.56413 -10.19064 -9.71247 -8.18802 -6.27904 -0.20552 1.37746 1.39876 1.50897 2.04935 2.41748 2.66239 3.11535 3.60423 3.69363 3.79564 3.94245 4.03462 4.16741 4.26643 4.32332 4.47315 4.48467 4.50285 4.56189 4.61019 4.69547 4.76609 4.84902 4.85372 4.97335 5.04052 5.06320 5.12064 5.13852 5.17502 5.22529 5.27425 5.29758 5.38239 5.40583 5.44135 5.46337 5.56875 5.59999 5.64694 5.73931 5.77566 5.98093 6.14033 6.23040 6.80142 7.39940 8.88082 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.005161 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.106306 B = 5424.405742 C = 5731.603760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 N -0.995 5.995 4 C 0.281 3.719 5 C -0.544 4.544 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 S 2.795 3.205 14 O -1.025 7.025 15 O -1.000 7.000 16 N -1.113 6.113 17 C 0.187 3.813 18 C -0.186 4.186 19 C -0.163 4.163 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.084 4.084 24 H 0.070 0.930 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.044 0.956 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 -2.012 14.002 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.837 5.837 4 C 0.157 3.843 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.202 1.202 13 S 2.804 3.196 14 O -1.009 7.009 15 O -0.983 6.983 16 N -0.874 5.874 17 C 0.100 3.900 18 C -0.244 4.244 19 C -0.202 4.202 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.250 0.750 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.303 -2.349 14.271 18.988 hybrid contribution 1.077 0.756 -1.295 1.847 sum -11.225 -1.594 12.976 17.232 Atomic orbital electron populations 1.22548 0.94643 1.03162 1.03061 1.21391 0.95912 0.81454 1.03043 1.57529 1.78766 1.21511 1.25856 1.18499 0.95799 0.88743 0.81257 1.21883 1.07019 1.21556 1.07913 0.93400 1.25659 0.99101 0.94502 0.99296 1.70001 1.38721 1.21496 1.26043 0.85651 0.79697 0.77931 0.79056 1.19118 1.20610 1.20247 1.01275 0.72551 0.72981 0.72772 1.93560 1.46559 1.77250 1.83490 1.93535 1.87360 1.58500 1.58923 1.55851 1.23704 1.24612 1.83201 1.20260 0.78732 0.96382 0.94656 1.22869 1.04207 0.95242 1.02050 1.22594 0.97009 1.03082 0.97498 1.21554 0.93790 0.99827 0.99967 1.21555 0.99566 0.98775 0.95682 1.21641 0.92405 1.02910 0.97680 1.21327 0.96237 0.97380 0.95424 0.91142 1.21905 0.99407 1.02566 0.96903 0.92478 0.89781 0.90439 0.91342 0.89336 0.95212 0.96602 0.92533 0.74979 0.91428 0.91348 0.88419 0.89695 0.93103 0.90484 0.91773 0.90294 0.92613 0.90333 0.90578 0.91989 0.93679 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.64 8.35 71.98 0.60 -4.04 16 2 C 0.11 3.62 5.70 86.38 0.49 4.11 16 3 N -1.00 -40.60 1.81 -519.88 -0.94 -41.54 16 4 C 0.28 13.82 4.26 85.63 0.37 14.19 16 5 C -0.54 -30.93 9.29 25.60 0.24 -30.69 16 6 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 7 C 0.01 0.78 5.45 84.66 0.46 1.24 16 8 N -0.92 -53.81 13.29 21.45 0.28 -53.53 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 S 2.80 112.93 5.44 -56.49 -0.31 112.62 16 14 O -1.02 -52.12 17.77 -128.00 -2.27 -54.39 16 15 O -1.00 -39.13 12.96 -128.00 -1.66 -40.79 16 16 N -1.11 -35.44 4.89 -152.22 -0.74 -36.19 16 17 C 0.19 4.79 0.64 3.60 0.00 4.79 16 18 C -0.19 -4.56 5.28 71.98 0.38 -4.18 16 19 C -0.16 -4.32 4.45 30.60 0.14 -4.19 16 20 C -0.11 -2.21 5.44 30.60 0.17 -2.05 16 21 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 22 C -0.11 -1.67 4.93 30.61 0.15 -1.52 16 23 C -0.08 -1.69 2.06 -10.78 -0.02 -1.71 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.15 -2.89 8.68 71.98 0.62 -2.27 16 26 H 0.06 1.66 5.93 -2.38 -0.01 1.65 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.82 3.61 -2.39 -0.01 1.81 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.81 6.55 -2.39 -0.02 2.79 16 31 H 0.03 1.48 7.13 -2.39 -0.02 1.46 16 32 H 0.02 0.84 8.01 -2.39 -0.02 0.82 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.42 12.39 8.37 -96.74 -0.81 11.58 16 35 H 0.07 1.87 2.83 -2.39 -0.01 1.86 16 36 H 0.07 1.76 6.10 -2.39 -0.01 1.74 16 37 H 0.10 1.81 4.81 -2.38 -0.01 1.80 16 38 H 0.08 2.54 1.79 -2.39 0.00 2.53 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.31 5.97 -2.39 -0.01 1.30 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 1.07 6.43 -2.39 -0.02 1.05 16 46 H 0.06 1.17 6.43 -2.38 -0.02 1.16 16 47 H 0.04 0.97 7.36 -2.39 -0.02 0.95 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.62 348.19 0.33 -69.29 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.17 Total: 25.27 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.78 Total: -28.04 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -1.40 Total: -131.25 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -3.93 Total: -95.18 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 112.93 SS G_CDS: -0.31 Total: 112.62 kcal Total: -69.62 0.33 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416512458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.424 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds