Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46492 * 109.47397 * 2 1 4 4 C 1.46508 * 120.00108 * 274.72717 * 3 2 1 5 5 C 1.50699 * 109.47030 * 81.73082 * 4 3 2 6 6 H 1.07995 * 120.00117 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99781 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00292 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00262 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47045 * 89.99930 * 9 7 5 11 11 H 1.48499 * 109.47698 * 210.00090 * 9 7 5 12 12 H 1.48508 * 109.47260 * 330.00222 * 9 7 5 13 13 S 1.65601 * 120.00513 * 95.00279 * 3 2 1 14 14 O 1.42091 * 106.40548 * 181.32180 * 13 3 2 15 15 O 1.42107 * 106.39696 * 314.23790 * 13 3 2 16 16 N 1.65596 * 107.21909 * 67.77426 * 13 3 2 17 17 C 1.46502 * 119.99747 * 67.87133 * 16 13 3 18 18 C 1.52999 * 109.46773 * 320.60777 * 17 16 13 19 19 C 1.53000 * 109.47314 * 80.60719 * 17 16 13 20 20 C 1.53004 * 109.46779 * 59.99763 * 19 17 16 21 21 C 1.52999 * 109.47039 * 60.00497 * 20 19 17 22 22 C 1.53000 * 109.46929 * 299.99411 * 21 20 19 23 23 C 1.52999 * 109.47093 * 200.61041 * 17 16 13 24 24 H 1.08998 * 109.47545 * 180.02562 * 23 17 16 25 25 C 1.53000 * 109.47304 * 59.99672 * 23 17 16 26 26 H 1.09001 * 109.47555 * 60.00023 * 1 2 3 27 27 H 1.09003 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47193 * 300.00068 * 1 2 3 29 29 H 1.09003 * 109.47236 * 239.99491 * 2 1 3 30 30 H 1.09001 * 109.47555 * 119.99977 * 2 1 3 31 31 H 1.08995 * 109.47141 * 201.73286 * 4 3 2 32 32 H 1.09002 * 109.46391 * 321.72950 * 4 3 2 33 33 H 0.97001 * 120.00331 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00159 * 247.86301 * 16 13 3 35 35 H 1.08998 * 109.47059 * 69.78441 * 18 17 16 36 36 H 1.09005 * 109.46652 * 189.78458 * 18 17 16 37 37 H 1.08999 * 109.47442 * 309.77678 * 18 17 16 38 38 H 1.08998 * 109.47195 * 179.97438 * 19 17 16 39 39 H 1.08995 * 109.47274 * 300.00177 * 19 17 16 40 40 H 1.09004 * 109.46996 * 179.97438 * 20 19 17 41 41 H 1.08987 * 109.47488 * 299.99942 * 20 19 17 42 42 H 1.09004 * 109.47367 * 59.99514 * 21 20 19 43 43 H 1.08995 * 109.47353 * 179.97438 * 21 20 19 44 44 H 1.09004 * 109.47286 * 179.97438 * 22 21 20 45 45 H 1.08997 * 109.47480 * 299.99946 * 22 21 20 46 46 H 1.09000 * 109.47159 * 59.99904 * 25 23 17 47 47 H 1.09000 * 109.47281 * 180.02562 * 25 23 17 48 48 H 1.09004 * 109.47180 * 300.00219 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1639 2.1066 -1.2645 5 6 0.8258 2.6585 -1.6840 6 1 -0.0458 2.4864 -1.0699 7 6 0.7144 3.3830 -2.8516 8 7 -0.4532 3.8651 -3.2176 9 14 2.2218 3.6801 -3.9141 10 1 2.3558 2.5795 -4.9020 11 1 2.0760 4.9729 -4.6301 12 1 3.4323 3.7239 -3.0548 13 16 2.4123 2.1202 1.4286 14 8 2.8156 3.4421 1.0987 15 8 1.3549 1.8333 2.3337 16 7 3.7560 1.3555 2.0219 17 6 5.0384 1.4820 1.3249 18 6 4.8040 1.4365 -0.1863 19 6 5.6934 2.8130 1.6996 20 6 5.9275 2.8585 3.2109 21 6 6.8461 1.7052 3.6196 22 6 6.1911 0.3742 3.2449 23 6 5.9568 0.3287 1.7336 24 1 6.9111 0.4230 1.2154 25 6 5.3018 -1.0023 1.3589 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8702 2.9264 -1.1337 32 1 2.5338 1.4273 -2.0325 33 1 -0.5317 4.3746 -4.0393 34 1 3.6940 0.8239 2.8309 35 1 4.2978 2.3483 -0.5031 36 1 5.7620 1.3555 -0.7002 37 1 4.1857 0.5733 -0.4324 38 1 6.6477 2.9069 1.1814 39 1 5.0390 3.6346 1.4085 40 1 6.3946 3.8065 3.4779 41 1 4.9735 2.7644 3.7294 42 1 7.8002 1.7993 3.1010 43 1 7.0133 1.7378 4.6962 44 1 6.8457 -0.4475 3.5356 45 1 5.2370 0.2800 3.7635 46 1 5.1349 -1.0347 0.2822 47 1 5.9560 -1.8240 1.6504 48 1 4.3477 -1.0964 1.8774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416512459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = -89.467457 kcal Electronic energy + Delta-G solvation = -28291.308819 eV Core-core repulsion = 24700.527539 eV Total energy + Delta-G solvation = -3590.781280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93276 -36.62645 -36.30964 -35.15678 -33.99116 -32.55624 -32.49803 -30.61095 -29.91963 -27.32405 -27.19581 -25.58122 -22.53776 -22.12679 -21.70136 -20.98485 -19.86099 -18.37124 -17.31123 -17.22888 -16.53884 -15.72926 -15.17890 -14.91673 -14.82606 -14.22102 -14.18387 -14.00579 -13.67491 -13.26000 -13.08044 -12.83690 -12.60573 -12.42230 -12.33522 -12.05734 -11.93503 -11.84660 -11.78790 -11.45384 -11.41186 -11.32974 -11.25988 -11.16012 -11.02002 -10.99758 -10.86628 -10.60019 -10.48496 -10.36228 -10.14223 -10.07716 -9.84781 -9.34492 -9.21025 -8.57521 -8.08478 -6.07403 -4.06553 1.21098 3.26465 3.34825 3.36386 3.48933 4.10379 4.39586 4.53508 4.60027 4.65300 4.99277 5.01902 5.08600 5.16413 5.22356 5.30419 5.36093 5.40143 5.45759 5.49034 5.54797 5.68622 5.75578 5.80553 5.84150 5.89649 5.92593 5.96441 6.05476 6.07187 6.13200 6.14393 6.16558 6.28324 6.40637 6.42258 6.48128 6.56504 6.72811 6.78237 7.09117 7.18024 7.22785 7.49579 7.62831 8.50713 8.99136 9.52315 11.05515 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.005520 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.828973 B = 5071.011990 C = 5494.068808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.139 3.861 3 N -0.989 5.989 4 C 0.221 3.779 5 C -0.535 4.535 6 H 0.083 0.917 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.262 1.262 13 S 2.787 3.213 14 O -0.971 6.971 15 O -0.993 6.993 16 N -1.123 6.123 17 C 0.196 3.804 18 C -0.202 4.202 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.086 4.086 24 H 0.079 0.921 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.407 0.593 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.562 -9.833 10.246 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 N -0.830 5.830 4 C 0.098 3.902 5 C -0.574 4.574 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.696 3.304 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.186 1.186 13 S 2.795 3.205 14 O -0.955 6.955 15 O -0.977 6.977 16 N -0.882 5.882 17 C 0.107 3.893 18 C -0.260 4.260 19 C -0.180 4.180 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.106 4.106 24 H 0.098 0.902 25 C -0.206 4.206 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.025 -8.875 10.336 20.282 hybrid contribution 0.775 -0.340 -0.539 1.004 sum 15.801 -9.215 9.797 20.750 Atomic orbital electron populations 1.22334 0.95978 1.00700 1.04631 1.20915 0.95144 0.81956 1.00700 1.57499 1.79092 1.23058 1.23332 1.19623 0.98458 0.91612 0.80550 1.21522 0.94579 1.33423 1.07890 0.89893 1.24876 0.95674 0.94971 0.97393 1.69895 1.23438 1.36106 1.23937 0.86957 0.84284 0.78108 0.81075 1.20164 1.21011 1.18627 1.01828 0.72510 0.73546 0.72630 1.93554 1.82594 1.35369 1.83969 1.93561 1.53542 1.85721 1.64882 1.56324 1.23611 1.69705 1.38593 1.19974 0.83016 0.94849 0.91454 1.22967 1.03959 1.05129 0.93954 1.22211 1.01495 0.98137 0.96159 1.21465 0.99706 0.97861 0.96372 1.21551 0.98788 0.94872 1.00452 1.21600 1.00732 0.97359 0.95534 1.21343 0.98558 0.94449 0.96206 0.90249 1.21873 1.00723 0.95926 1.02119 0.89689 0.93435 0.92265 0.91153 0.92739 0.93263 0.95606 0.92580 0.75917 0.89815 0.90866 0.90095 0.91356 0.89017 0.92152 0.91926 0.92127 0.92328 0.92010 0.91944 0.91970 0.92974 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 9.77 37.15 0.36 -2.83 16 2 C 0.14 2.26 5.89 -4.05 -0.02 2.24 16 3 N -0.99 -18.97 1.34 -115.67 -0.16 -19.12 16 4 C 0.22 4.96 2.59 -5.19 -0.01 4.95 16 5 C -0.54 -14.70 8.96 -34.44 -0.31 -15.01 16 6 H 0.08 2.49 6.78 -52.49 -0.36 2.14 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 13 S 2.79 52.93 5.32 -107.50 -0.57 52.36 16 14 O -0.97 -21.47 13.63 -57.17 -0.78 -22.25 16 15 O -0.99 -21.28 17.35 -57.17 -0.99 -22.27 16 16 N -1.12 -15.12 4.04 0.54 0.00 -15.12 16 17 C 0.20 2.38 0.39 -131.82 -0.05 2.33 16 18 C -0.20 -2.72 5.96 37.16 0.22 -2.50 16 19 C -0.14 -1.78 4.74 -26.73 -0.13 -1.91 16 20 C -0.12 -1.28 5.77 -26.73 -0.15 -1.43 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -0.97 5.03 -26.73 -0.13 -1.11 16 23 C -0.09 -0.80 2.01 -90.62 -0.18 -0.98 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 C -0.15 -1.31 8.69 37.16 0.32 -0.99 16 26 H 0.08 1.79 6.29 -51.93 -0.33 1.46 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.16 7.65 -51.92 -0.40 0.76 16 29 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 30 H 0.05 0.72 7.99 -51.93 -0.41 0.31 16 31 H 0.05 1.15 4.23 -51.93 -0.22 0.93 16 32 H 0.03 0.55 7.47 -51.93 -0.39 0.16 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.41 4.63 6.63 -34.47 -0.23 4.41 16 35 H 0.08 1.39 4.04 -51.93 -0.21 1.19 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.08 1.05 5.48 -51.93 -0.28 0.77 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.43 6.31 -51.93 -0.33 1.11 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.74 7.60 -51.94 -0.39 0.35 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 46 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.52 7.33 -51.93 -0.38 0.14 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -32.82 355.64 -9.38 -42.20 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.00 Total: 5.52 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.34 Total: -16.46 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.62 Total: -60.59 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.77 Total: -44.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.57 Total: 52.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.82 -9.38 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416512459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.271 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds