Wall clock time and date at job start Tue Mar 31 2020 12:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.46657 * 2 1 4 4 C 1.46501 * 120.00023 * 274.08744 * 3 2 1 5 5 C 1.50694 * 109.47269 * 294.56553 * 4 3 2 6 6 H 1.07998 * 120.00322 * 359.97438 * 5 4 3 7 7 C 1.37886 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99667 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46867 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47336 * 119.99710 * 9 7 5 12 12 H 1.48507 * 109.47054 * 239.99959 * 9 7 5 13 13 S 1.65594 * 120.00142 * 94.09479 * 3 2 1 14 14 O 1.42097 * 106.40420 * 173.86137 * 13 3 2 15 15 O 1.42111 * 106.40263 * 40.94353 * 13 3 2 16 16 N 1.65598 * 107.22041 * 287.40443 * 13 3 2 17 17 C 1.46499 * 119.99474 * 284.92946 * 16 13 3 18 18 C 1.52992 * 109.47482 * 49.80673 * 17 16 13 19 19 C 1.53005 * 109.46899 * 289.80574 * 17 16 13 20 20 C 1.53005 * 109.47163 * 300.00060 * 19 17 16 21 21 C 1.52997 * 109.47125 * 300.00120 * 20 19 17 22 22 C 1.52999 * 109.47253 * 60.00196 * 21 20 19 23 23 C 1.53001 * 109.47009 * 299.99596 * 22 21 20 24 24 H 1.09004 * 109.47462 * 300.00239 * 23 22 21 25 25 C 1.52999 * 109.47009 * 180.02562 * 23 22 21 26 26 H 1.08999 * 109.47211 * 302.66320 * 1 2 3 27 27 H 1.09004 * 109.47134 * 62.66317 * 1 2 3 28 28 H 1.08999 * 109.46790 * 182.66041 * 1 2 3 29 29 H 1.08999 * 109.47240 * 240.00103 * 2 1 3 30 30 H 1.08992 * 109.46667 * 119.99875 * 2 1 3 31 31 H 1.09001 * 109.47004 * 54.56181 * 4 3 2 32 32 H 1.08998 * 109.47368 * 174.55643 * 4 3 2 33 33 H 0.97005 * 120.00182 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00020 * 104.92625 * 16 13 3 35 35 H 1.09011 * 109.47168 * 165.94414 * 18 17 16 36 36 H 1.08999 * 109.47596 * 285.94125 * 18 17 16 37 37 H 1.08996 * 109.47178 * 45.94485 * 18 17 16 38 38 H 1.09000 * 109.46965 * 60.00658 * 19 17 16 39 39 H 1.09009 * 109.46816 * 180.02562 * 19 17 16 40 40 H 1.08997 * 109.46517 * 60.00514 * 20 19 17 41 41 H 1.09000 * 109.46483 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47035 * 299.99549 * 21 20 19 43 43 H 1.09002 * 109.46894 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.47370 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47372 * 59.99572 * 22 21 20 46 46 H 1.09001 * 109.47370 * 60.00295 * 25 23 22 47 47 H 1.09002 * 109.47053 * 180.02562 * 25 23 22 48 48 H 1.08997 * 109.47197 * 299.99514 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1772 2.1020 -1.2655 5 6 3.2565 1.4444 -2.0861 6 1 3.7729 0.5766 -1.7032 7 6 3.5849 1.9506 -3.3260 8 7 2.9557 3.0071 -3.7925 9 14 4.9233 1.1359 -4.3429 10 1 5.4726 -0.0258 -3.5985 11 1 4.3520 0.6725 -5.6329 12 1 6.0098 2.1136 -4.6055 13 16 2.3908 2.1278 1.4304 14 8 2.9637 3.3830 1.0907 15 8 3.0587 1.1587 2.2268 16 7 0.9610 2.4586 2.1976 17 6 0.1176 3.5618 1.7310 18 6 -0.0822 3.4467 0.2186 19 6 0.7954 4.8946 2.0560 20 6 0.9951 5.0097 3.5685 21 6 -0.3636 4.9444 4.2688 22 6 -1.0413 3.6117 3.9440 23 6 -1.2411 3.4966 2.4314 24 1 -1.8686 4.3175 2.0843 25 6 -1.9194 2.1642 2.1066 26 1 -0.3633 0.5546 0.8651 27 1 -0.3633 0.4719 -0.9129 28 1 -0.3633 -1.0266 0.0477 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2371 2.0796 -1.8168 32 1 2.4545 3.1364 -1.0622 33 1 3.1869 3.3635 -4.6646 34 1 0.6820 1.9219 2.9559 35 1 -0.8958 4.1026 -0.0914 36 1 0.8351 3.7393 -0.2925 37 1 -0.3282 2.4164 -0.0380 38 1 1.7633 4.9411 1.5569 39 1 0.1676 5.7155 1.7091 40 1 1.6227 4.1889 3.9156 41 1 1.4775 5.9594 3.7999 42 1 -0.9911 5.7653 3.9217 43 1 -0.2213 5.0269 5.3464 44 1 -2.0091 3.5650 4.4432 45 1 -0.4138 2.7909 4.2910 46 1 -2.8874 2.1181 2.6055 47 1 -2.0614 2.0819 1.0290 48 1 -1.2922 1.3431 2.4537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416512460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:36 Heat of formation + Delta-G solvation = -98.271924 kcal Electronic energy + Delta-G solvation = -28322.704784 eV Core-core repulsion = 24731.541714 eV Total energy + Delta-G solvation = -3591.163070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83092 -36.59784 -36.14561 -35.15196 -33.88576 -32.63124 -32.46335 -30.38049 -29.86542 -27.20975 -26.60249 -25.53836 -23.14675 -21.95521 -21.54329 -20.88495 -19.74625 -18.32307 -17.39963 -16.82789 -16.29517 -15.71910 -15.07592 -14.89319 -14.57428 -14.35900 -14.05503 -13.95284 -13.69046 -13.43217 -12.96843 -12.80720 -12.42639 -12.12497 -12.08982 -11.95557 -11.92282 -11.86249 -11.74782 -11.56020 -11.40600 -11.27003 -11.12271 -11.09003 -10.96708 -10.81850 -10.75719 -10.49415 -10.47158 -10.36908 -10.18608 -9.95617 -9.71340 -9.50257 -9.07784 -8.45809 -7.97315 -6.06749 -4.10705 1.30385 3.29328 3.37500 3.41891 3.58053 4.16037 4.43433 4.64653 4.69912 4.76371 5.07423 5.12707 5.17321 5.28018 5.30878 5.40534 5.46388 5.51335 5.56162 5.58786 5.64554 5.76560 5.77947 5.80554 5.85505 5.93930 5.99639 6.02844 6.07778 6.19208 6.20195 6.25816 6.27763 6.37112 6.41020 6.56683 6.66319 6.69511 6.71709 6.84477 7.25732 7.39056 7.50761 7.70654 7.91591 8.25345 8.93882 9.54449 11.01725 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004877 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.819728 B = 5739.902826 C = 5908.124167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 N -0.991 5.991 4 C 0.249 3.751 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.782 3.218 14 O -0.972 6.972 15 O -1.002 7.002 16 N -1.122 6.122 17 C 0.197 3.803 18 C -0.197 4.197 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.085 4.085 24 H 0.079 0.921 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.057 0.943 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 0.610 13.041 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.005 4.005 3 N -0.832 5.832 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.791 3.209 14 O -0.956 6.956 15 O -0.986 6.986 16 N -0.880 5.880 17 C 0.109 3.891 18 C -0.255 4.255 19 C -0.189 4.189 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.105 4.105 24 H 0.098 0.902 25 C -0.207 4.207 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.837 1.056 13.048 16.994 hybrid contribution 0.164 -0.721 -0.527 0.908 sum -10.673 0.335 12.521 16.456 Atomic orbital electron populations 1.22435 0.97466 1.01266 1.02533 1.21049 0.92857 0.83402 1.03221 1.57628 1.81202 1.21526 1.22881 1.19214 0.97019 0.92547 0.78530 1.21532 1.19793 1.14089 1.01707 0.91984 1.24939 0.96537 0.94961 0.97581 1.69935 1.41544 1.22598 1.19026 0.86499 0.81806 0.79509 0.79954 1.19683 1.20994 1.20893 1.01854 0.73076 0.73325 0.72679 1.93525 1.75892 1.42336 1.83816 1.93540 1.72006 1.62798 1.70260 1.56295 1.42374 1.43405 1.45944 1.19980 0.89671 0.85720 0.93745 1.22875 1.04541 1.04125 0.93919 1.22392 1.03798 0.96165 0.96519 1.21449 0.96623 1.01527 0.95650 1.21548 0.96991 0.97418 0.99665 1.21591 1.00198 0.97901 0.95478 1.21333 0.95232 0.98706 0.95181 0.90247 1.21942 0.99723 0.96918 1.02138 0.92390 0.91855 0.92587 0.89394 0.91663 0.95388 0.92522 0.92771 0.76123 0.91350 0.89875 0.90125 0.87716 0.91417 0.92209 0.92228 0.92162 0.92475 0.92169 0.91964 0.93043 0.91844 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.89 37.16 0.33 -2.10 16 2 C 0.12 2.08 6.28 -4.04 -0.03 2.05 16 3 N -0.99 -19.76 1.93 -115.66 -0.22 -19.99 16 4 C 0.25 6.00 3.53 -5.20 -0.02 5.98 16 5 C -0.53 -14.45 8.64 -34.44 -0.30 -14.74 16 6 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 53.52 5.49 -107.50 -0.59 52.93 16 14 O -0.97 -21.56 12.79 -57.17 -0.73 -22.29 16 15 O -1.00 -21.45 17.19 -57.17 -0.98 -22.43 16 16 N -1.12 -15.73 3.85 0.54 0.00 -15.72 16 17 C 0.20 2.57 0.37 -131.82 -0.05 2.52 16 18 C -0.20 -2.89 5.98 37.15 0.22 -2.67 16 19 C -0.15 -2.07 4.57 -26.73 -0.12 -2.20 16 20 C -0.11 -1.39 5.77 -26.73 -0.15 -1.55 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 22 C -0.11 -1.06 5.03 -26.73 -0.13 -1.19 16 23 C -0.08 -0.86 1.96 -90.62 -0.18 -1.03 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 C -0.15 -1.41 7.84 37.16 0.29 -1.12 16 26 H 0.06 0.70 4.93 -51.93 -0.26 0.45 16 27 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.61 7.39 -51.93 -0.38 1.23 16 30 H 0.07 1.06 7.28 -51.93 -0.38 0.68 16 31 H 0.03 0.69 7.93 -51.93 -0.41 0.27 16 32 H 0.06 1.49 5.59 -51.93 -0.29 1.20 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.41 4.81 6.38 -34.47 -0.22 4.59 16 35 H 0.07 0.88 8.07 -51.92 -0.42 0.46 16 36 H 0.08 1.51 4.66 -51.93 -0.24 1.27 16 37 H 0.08 1.16 3.96 -51.93 -0.21 0.96 16 38 H 0.10 1.80 5.51 -51.93 -0.29 1.51 16 39 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.59 6.67 -51.93 -0.35 0.24 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 48 H 0.06 0.55 6.01 -51.93 -0.31 0.24 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -31.46 353.05 -9.69 -41.15 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.81 Total: 5.22 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.39 Total: -15.73 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.52 Total: -60.53 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.71 Total: -44.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 53.52 SS G_CDS: -0.59 Total: 52.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.46 -9.69 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416512460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.119 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds