Wall clock time and date at job start Tue Mar 31 2020 12:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47288 * 2 1 4 4 C 1.46496 * 120.00301 * 82.60347 * 3 2 1 5 5 C 1.50700 * 109.47463 * 63.01736 * 4 3 2 6 6 H 1.08004 * 119.99780 * 2.86977 * 5 4 3 7 7 C 1.37881 * 120.00114 * 182.85856 * 5 4 3 8 8 N 1.31512 * 119.99687 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99969 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47210 * 269.99497 * 9 7 5 11 11 H 1.48504 * 109.47150 * 30.00077 * 9 7 5 12 12 H 1.48502 * 109.46842 * 149.99502 * 9 7 5 13 13 S 1.65601 * 119.99613 * 262.59936 * 3 2 1 14 14 O 1.42092 * 106.40466 * 31.38028 * 13 3 2 15 15 O 1.42101 * 106.40087 * 164.30365 * 13 3 2 16 16 N 1.65604 * 107.21815 * 277.83847 * 13 3 2 17 17 C 1.46503 * 120.00165 * 272.36755 * 16 13 3 18 18 C 1.52997 * 109.47280 * 286.59291 * 17 16 13 19 19 C 1.53002 * 109.47185 * 46.59098 * 17 16 13 20 20 C 1.52998 * 109.47258 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47013 * 299.99925 * 20 19 17 22 22 C 1.53002 * 109.47047 * 59.99946 * 21 20 19 23 23 C 1.52998 * 109.47258 * 299.99904 * 22 21 20 24 24 H 1.08996 * 109.47445 * 299.99886 * 23 22 21 25 25 C 1.53002 * 109.47042 * 179.97438 * 23 22 21 26 26 H 1.09001 * 109.47030 * 300.00578 * 1 2 3 27 27 H 1.08999 * 109.47226 * 59.99688 * 1 2 3 28 28 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47030 * 239.99422 * 2 1 3 30 30 H 1.09005 * 109.46736 * 119.99829 * 2 1 3 31 31 H 1.09001 * 109.47027 * 303.02084 * 4 3 2 32 32 H 1.09009 * 109.47494 * 183.01924 * 4 3 2 33 33 H 0.97000 * 120.00196 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00023 * 92.36815 * 16 13 3 35 35 H 1.09003 * 109.46971 * 69.22855 * 18 17 16 36 36 H 1.08998 * 109.47516 * 189.22877 * 18 17 16 37 37 H 1.09002 * 109.47291 * 309.22996 * 18 17 16 38 38 H 1.09003 * 109.47163 * 300.00216 * 19 17 16 39 39 H 1.09005 * 109.46627 * 59.99703 * 19 17 16 40 40 H 1.08997 * 109.46863 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47029 * 59.99828 * 20 19 17 42 42 H 1.08995 * 109.47692 * 300.00317 * 21 20 19 43 43 H 1.09000 * 109.47275 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.47163 * 179.97438 * 22 21 20 45 45 H 1.09009 * 109.47068 * 59.99998 * 22 21 20 46 46 H 1.08999 * 109.47614 * 300.00138 * 25 23 22 47 47 H 1.09003 * 109.47006 * 60.00049 * 25 23 22 48 48 H 1.09006 * 109.46929 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1086 2.1262 1.2581 5 6 3.0980 1.4507 2.1722 6 1 3.6429 0.5828 1.8313 7 6 3.3079 1.9408 3.4438 8 7 4.1718 1.3515 4.2413 9 14 2.3652 3.4417 4.0336 10 1 3.1319 4.6695 3.7023 11 1 1.0407 3.4892 3.3637 12 1 2.1735 3.3595 5.5039 13 16 2.4685 2.1001 -1.4223 14 8 1.6487 1.5338 -2.4353 15 8 2.5320 3.4960 -1.1637 16 7 4.0177 1.6141 -1.7484 17 6 5.1512 2.3657 -1.2038 18 6 5.2977 3.6873 -1.9608 19 6 4.9081 2.6519 0.2794 20 6 6.0916 3.4374 0.8479 21 6 7.3722 2.6152 0.6903 22 6 7.6153 2.3291 -0.7929 23 6 6.4318 1.5436 -1.3614 24 1 6.3279 0.6021 -0.8221 25 6 6.6747 1.2581 -2.8448 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.1296 2.1506 1.7369 32 1 2.4389 3.1449 1.0543 33 1 4.3192 1.6960 5.1360 34 1 4.1746 0.8318 -2.2999 35 1 4.4598 4.3405 -1.7169 36 1 6.2310 4.1702 -1.6715 37 1 5.3065 3.4927 -3.0332 38 1 3.9959 3.2379 0.3917 39 1 4.8037 1.7103 0.8186 40 1 5.9185 3.6408 1.9047 41 1 6.1955 4.3788 0.3086 42 1 7.2684 1.6737 1.2296 43 1 8.2155 3.1750 1.0950 44 1 8.5280 1.7438 -0.9052 45 1 7.7193 3.2707 -1.3323 46 1 6.7784 2.1997 -3.3839 47 1 7.5872 0.6725 -2.9575 48 1 5.8313 0.6988 -3.2500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416512461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:39 Heat of formation + Delta-G solvation = -90.441371 kcal Electronic energy + Delta-G solvation = -28615.236500 eV Core-core repulsion = 25024.412988 eV Total energy + Delta-G solvation = -3590.823512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.62209 -36.72519 -36.23439 -35.28637 -33.96986 -32.72294 -32.08449 -30.19682 -29.37767 -27.35776 -27.02387 -25.31814 -23.03954 -22.04157 -21.30055 -20.88731 -18.72742 -18.18824 -17.34645 -16.92205 -16.73494 -16.11632 -15.33245 -14.59849 -14.28021 -14.15185 -13.96606 -13.78872 -13.45184 -13.23497 -12.74851 -12.69121 -12.40936 -12.34604 -12.16062 -12.11726 -11.99490 -11.91589 -11.48692 -11.46905 -11.41125 -11.24823 -11.13298 -10.90754 -10.80355 -10.63216 -10.55584 -10.49146 -10.19601 -10.11969 -10.03431 -9.91882 -9.45142 -9.31455 -8.96083 -8.60901 -8.07721 -6.16146 -4.12771 1.24168 3.25062 3.32340 3.37458 3.51337 4.09169 4.34723 4.87666 4.90782 4.99095 5.13473 5.16298 5.36722 5.43347 5.49413 5.59571 5.64743 5.70041 5.76817 5.81716 5.84048 5.91730 5.93834 6.02480 6.08668 6.11026 6.17981 6.24812 6.29606 6.31947 6.40779 6.46448 6.61840 6.66949 6.68770 6.72730 6.73803 6.86784 6.92160 7.07957 7.16465 7.26113 7.40703 7.51800 7.61918 8.40929 8.84623 9.44563 10.95384 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.008374 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.191304 B = 3342.692422 C = 4894.504111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.210 3.790 5 C -0.524 4.524 6 H 0.084 0.916 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.859 3.141 10 H -0.272 1.272 11 H -0.264 1.264 12 H -0.286 1.286 13 S 2.783 3.217 14 O -1.000 7.000 15 O -0.980 6.980 16 N -1.119 6.119 17 C 0.193 3.807 18 C -0.179 4.179 19 C -0.159 4.159 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.086 4.086 24 H 0.077 0.923 25 C -0.149 4.149 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 -0.293 -10.046 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.828 5.828 4 C 0.087 3.913 5 C -0.563 4.563 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.686 3.314 10 H -0.197 1.197 11 H -0.188 1.188 12 H -0.212 1.212 13 S 2.792 3.208 14 O -0.984 6.984 15 O -0.965 6.965 16 N -0.877 5.877 17 C 0.106 3.894 18 C -0.237 4.237 19 C -0.197 4.197 20 C -0.143 4.143 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.106 4.106 24 H 0.096 0.904 25 C -0.206 4.206 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.575 0.476 -10.281 10.896 hybrid contribution -0.113 0.118 0.524 0.549 sum 3.462 0.594 -9.758 10.371 Atomic orbital electron populations 1.22177 0.97028 1.01393 1.02225 1.20974 0.93628 0.82572 1.02377 1.57539 1.78366 1.23032 1.23859 1.19704 0.97877 0.92385 0.81355 1.21211 1.22463 1.15231 0.97362 0.89846 1.24759 0.94767 0.96434 0.96426 1.69873 1.34410 1.40433 1.08171 0.87100 0.81638 0.84329 0.78319 1.19737 1.18835 1.21197 1.01776 0.72630 0.73618 0.72814 1.93552 1.66603 1.80285 1.57983 1.93529 1.86726 1.30741 1.85458 1.56162 1.23955 1.42080 1.65491 1.20087 0.84826 0.90177 0.94358 1.22633 1.03667 0.97849 0.99562 1.22771 0.99730 1.05021 0.92166 1.21348 0.93925 0.97615 1.01421 1.21550 0.97700 1.00974 0.95488 1.21631 0.96787 0.99830 0.96603 1.21297 0.94140 0.99187 0.95974 0.90427 1.21898 1.00962 1.01513 0.96244 0.92141 0.92756 0.92354 0.92317 0.89293 0.95556 0.93284 0.92607 0.76241 0.90077 0.91345 0.93055 0.89599 0.86736 0.91355 0.92938 0.91424 0.92736 0.92356 0.91829 0.92399 0.92931 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.22 37.16 0.38 -2.29 16 2 C 0.13 2.23 5.97 -4.05 -0.02 2.21 16 3 N -0.99 -19.07 2.86 -115.67 -0.33 -19.40 16 4 C 0.21 4.65 3.70 -5.20 -0.02 4.63 16 5 C -0.52 -12.70 6.25 -34.44 -0.22 -12.91 16 6 H 0.08 2.16 7.06 -52.48 -0.37 1.79 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.46 13.96 55.43 0.77 -23.68 16 9 Si 0.86 20.07 27.53 -169.99 -4.68 15.39 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.26 -6.02 6.46 56.52 0.37 -5.65 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 S 2.78 52.10 5.57 -107.50 -0.60 51.51 16 14 O -1.00 -20.02 17.36 -57.17 -0.99 -21.01 16 15 O -0.98 -20.46 12.35 -57.17 -0.71 -21.16 16 16 N -1.12 -17.48 5.40 0.54 0.00 -17.47 16 17 C 0.19 3.00 0.50 -131.82 -0.07 2.94 16 18 C -0.18 -2.67 7.08 37.16 0.26 -2.40 16 19 C -0.16 -2.94 2.84 -26.73 -0.08 -3.02 16 20 C -0.10 -1.79 5.65 -26.73 -0.15 -1.94 16 21 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 22 C -0.11 -1.38 4.93 -26.73 -0.13 -1.51 16 23 C -0.09 -1.14 2.13 -90.62 -0.19 -1.33 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.15 -1.64 8.68 37.16 0.32 -1.32 16 26 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.88 7.74 -51.93 -0.40 0.48 16 30 H 0.09 1.58 7.23 -51.93 -0.38 1.21 16 31 H 0.03 0.60 6.89 -51.93 -0.36 0.24 16 32 H 0.05 1.13 4.64 -51.92 -0.24 0.89 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 5.36 7.11 -34.47 -0.25 5.12 16 35 H 0.08 1.39 6.16 -51.93 -0.32 1.07 16 36 H 0.07 0.91 4.87 -51.93 -0.25 0.66 16 37 H 0.05 0.69 6.95 -51.93 -0.36 0.33 16 38 H 0.09 1.78 3.37 -51.93 -0.17 1.61 16 39 H 0.11 2.38 5.25 -51.93 -0.27 2.11 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.82 6.65 -51.93 -0.35 0.47 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.75 6.24 -51.92 -0.32 0.43 16 46 H 0.06 0.62 6.64 -51.93 -0.34 0.27 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.56 6.62 -51.93 -0.34 0.22 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -28.52 349.95 -9.13 -37.65 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.70 Total: 9.81 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.17 Total: -16.89 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.45 Total: -60.56 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.70 Total: -42.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.68 Total: 15.39 kcal Atomic # 16 Polarization: 52.10 SS G_CDS: -0.60 Total: 51.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.52 -9.13 -37.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416512461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.792 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds