Wall clock time and date at job start Tue Mar 31 2020 12:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99688 * 2 1 4 4 C 1.46899 * 110.99988 * 123.95345 * 2 1 3 5 5 H 1.09002 * 109.49125 * 55.00083 * 4 2 1 6 6 C 1.52574 * 109.48938 * 294.95434 * 4 2 1 7 7 C 1.47089 * 114.32223 * 155.00041 * 6 4 2 8 8 C 1.54858 * 110.32730 * 62.80149 * 7 6 4 9 9 N 1.44576 * 109.60429 * 288.73212 * 8 7 6 10 10 S 1.65590 * 118.64659 * 270.72704 * 9 8 7 11 11 O 1.42098 * 104.27836 * 206.07020 * 10 9 8 12 12 O 1.42105 * 104.27715 * 333.92337 * 10 9 8 13 13 C 1.81400 * 104.45293 * 89.99450 * 10 9 8 14 14 C 1.52998 * 109.47036 * 180.02562 * 13 10 9 15 15 C 1.53007 * 109.46893 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.46839 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00561 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99597 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00285 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46932 * 119.99716 * 20 18 16 23 23 H 1.48501 * 109.47075 * 239.99808 * 20 18 16 24 24 C 1.47616 * 122.71161 * 90.73887 * 9 8 7 25 25 C 1.50883 * 109.50884 * 175.05798 * 4 2 1 26 26 H 1.08999 * 109.47061 * 296.04489 * 1 2 3 27 27 H 1.09003 * 109.47216 * 56.04679 * 1 2 3 28 28 H 1.08997 * 109.47097 * 176.04423 * 1 2 3 29 29 H 1.09007 * 109.46964 * 183.95455 * 3 2 1 30 30 H 1.09003 * 109.47147 * 303.95102 * 3 2 1 31 31 H 1.08997 * 109.47210 * 63.95713 * 3 2 1 32 32 H 1.09002 * 108.50864 * 276.25050 * 6 4 2 33 33 H 1.08992 * 108.51207 * 33.90037 * 6 4 2 34 34 H 1.08997 * 109.32901 * 183.06655 * 7 6 4 35 35 H 1.09003 * 109.32991 * 302.70955 * 7 6 4 36 36 H 1.09009 * 109.44699 * 48.76967 * 8 7 6 37 37 H 1.09005 * 109.45340 * 168.71835 * 8 7 6 38 38 H 1.09002 * 109.46737 * 299.99984 * 13 10 9 39 39 H 1.08999 * 109.46790 * 60.00147 * 13 10 9 40 40 H 1.09002 * 109.47081 * 299.99451 * 14 13 10 41 41 H 1.08999 * 109.47474 * 60.00244 * 14 13 10 42 42 H 1.09002 * 109.46695 * 299.99549 * 15 14 13 43 43 H 1.08999 * 109.46974 * 59.99800 * 15 14 13 44 44 H 0.96998 * 120.00145 * 179.97438 * 19 18 16 45 45 H 1.09000 * 108.94156 * 78.53560 * 24 9 8 46 46 H 1.08991 * 108.94481 * 197.25080 * 24 9 8 47 47 H 1.09005 * 109.36657 * 332.05872 * 25 4 2 48 48 H 1.09001 * 109.36488 * 91.66539 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.5756 -1.7718 1.1243 6 6 1.6114 -0.0712 2.4405 7 6 1.5494 -0.9640 3.6078 8 6 2.9444 -1.5721 3.8945 9 7 3.2729 -2.5372 2.8693 10 16 2.8170 -4.1140 3.0880 11 8 3.7532 -4.8590 2.3215 12 8 2.7407 -4.2643 4.4990 13 6 1.1643 -4.2143 2.3470 14 6 0.6280 -5.6402 2.4878 15 6 -0.7658 -5.7250 1.8622 16 6 -1.2938 -7.1297 2.0003 17 1 -0.6951 -7.8864 2.4854 18 6 -2.5409 -7.4490 1.5065 19 7 -3.2698 -6.5277 0.9153 20 14 -3.1952 -9.1904 1.6771 21 1 -2.1891 -10.0311 2.3746 22 1 -4.4551 -9.1710 2.4628 23 1 -3.4611 -9.7536 0.3289 24 6 3.9983 -2.1749 1.6358 25 6 3.4988 -0.8467 1.0382 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8723 0.9233 32 1 2.3412 0.7129 2.6427 33 1 0.6338 0.3928 2.3101 34 1 1.2169 -0.3978 4.4778 35 1 0.8417 -1.7688 3.4092 36 1 3.6921 -0.7789 3.8993 37 1 2.9325 -2.0655 4.8664 38 1 0.4945 -3.5225 2.8578 39 1 1.2230 -3.9504 1.2910 40 1 1.2976 -6.3324 1.9772 41 1 0.5692 -5.9037 3.5438 42 1 -1.4357 -5.0328 2.3723 43 1 -0.7066 -5.4616 0.8061 44 1 -4.1470 -6.7525 0.5676 45 1 5.0603 -2.0836 1.8636 46 1 3.8614 -2.9667 0.8993 47 1 3.7956 -0.7873 -0.0090 48 1 3.9425 -0.0148 1.5852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428845576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:47 Heat of formation + Delta-G solvation = -75.558248 kcal Electronic energy + Delta-G solvation = -26767.881960 eV Core-core repulsion = 23177.703829 eV Total energy + Delta-G solvation = -3590.178131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.94327 -37.02908 -36.70425 -35.73039 -34.68293 -33.14367 -32.18597 -31.93853 -27.90737 -27.78159 -26.26753 -25.92940 -23.77295 -23.00364 -21.52393 -20.36443 -19.80613 -18.62097 -17.68292 -16.71990 -16.62343 -16.19214 -15.74410 -15.39090 -15.14623 -14.72745 -14.49385 -14.43463 -14.25646 -14.12009 -13.39698 -13.13072 -12.86374 -12.62671 -12.43773 -12.29884 -12.11067 -11.99515 -11.91504 -11.89759 -11.77083 -11.70571 -11.43287 -11.28831 -11.19495 -10.97909 -10.94925 -10.83616 -10.74854 -10.64791 -10.38278 -9.94515 -9.48839 -9.20381 -8.89447 -8.46258 -8.40832 -6.05598 -4.08424 0.45116 2.72204 3.29527 3.37116 3.42118 3.76590 3.99457 4.28103 4.28738 4.42792 4.53478 4.70884 4.79523 4.88254 4.93672 5.05184 5.10522 5.11103 5.18167 5.21713 5.30659 5.31753 5.38228 5.45048 5.52726 5.55351 5.60529 5.67197 5.76580 5.80147 5.84249 5.86939 5.89561 6.03106 6.07070 6.11206 6.27197 6.46379 6.61891 6.86735 6.87656 6.88819 7.57410 7.67305 7.92616 8.33278 8.98014 9.56383 11.05630 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003968 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.392183 B = 7054.124477 C = 8374.213972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.538 5.538 3 C 0.019 3.981 4 C 0.083 3.917 5 H 0.087 0.913 6 C -0.148 4.148 7 C -0.145 4.145 8 C 0.115 3.885 9 N -0.996 5.996 10 S 2.592 3.408 11 O -0.960 6.960 12 O -0.960 6.960 13 C -0.612 4.612 14 C -0.105 4.105 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.125 3.875 25 C -0.123 4.123 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 18.481 1.108 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.130 4.130 4 C -0.025 4.025 5 H 0.105 0.895 6 C -0.187 4.187 7 C -0.184 4.184 8 C -0.012 4.012 9 N -0.832 5.832 10 S 2.689 3.311 11 O -0.950 6.950 12 O -0.950 6.950 13 C -0.743 4.743 14 C -0.144 4.144 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.001 4.001 25 C -0.162 4.162 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.147 17.672 1.007 22.049 hybrid contribution -1.456 0.009 0.383 1.505 sum 11.691 17.681 1.390 21.243 Atomic orbital electron populations 1.22482 0.87152 1.03091 1.00455 1.62421 1.08212 1.13701 1.41729 1.22417 1.00844 0.89321 1.00371 1.21284 0.95332 0.98279 0.87654 0.89486 1.21125 1.02144 0.99545 0.95902 1.21365 0.98165 1.00255 0.98647 1.21373 0.95872 0.92908 0.91002 1.57325 1.70906 1.27345 1.27665 1.05641 0.77724 0.72771 0.75010 1.93563 1.59143 1.69377 1.72931 1.93545 1.87761 1.84474 1.29256 1.30718 1.21523 1.08725 1.13377 1.21493 1.02103 0.88616 1.02190 1.19054 0.88306 0.97345 0.95957 1.21295 1.01602 0.95643 1.37818 0.92336 1.25012 0.96877 0.97345 0.95087 1.69965 1.11453 1.33102 1.38897 0.86516 0.78900 0.84670 0.77841 1.19588 1.20955 1.20933 1.21627 0.95795 0.97717 0.84916 1.21847 0.94888 0.97349 1.02146 0.95104 0.91413 0.90721 0.91322 0.91729 0.95447 0.92060 0.91849 0.90382 0.91494 0.90124 0.88685 0.85527 0.85476 0.91629 0.91665 0.96206 0.96110 0.92977 0.91206 0.89412 0.89326 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.35 60.07 0.56 0.72 16 2 N -0.54 -5.28 4.91 -244.74 -1.20 -6.48 16 3 C 0.02 0.15 8.97 60.06 0.54 0.68 16 4 C 0.08 0.80 1.85 -68.99 -0.13 0.67 16 5 H 0.09 0.97 6.41 -51.93 -0.33 0.63 16 6 C -0.15 -1.28 3.40 -29.79 -0.10 -1.39 16 7 C -0.14 -1.32 5.74 -28.59 -0.16 -1.49 16 8 C 0.11 1.11 5.60 -4.09 -0.02 1.08 16 9 N -1.00 -11.27 2.47 -113.29 -0.28 -11.55 16 10 S 2.59 39.27 5.31 -107.50 -0.57 38.70 16 11 O -0.96 -17.05 16.70 -57.54 -0.96 -18.01 16 12 O -0.96 -16.90 16.42 -57.54 -0.94 -17.84 16 13 C -0.61 -9.59 5.60 37.16 0.21 -9.38 16 14 C -0.10 -2.14 5.16 -26.73 -0.14 -2.27 16 15 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 16 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.12 1.22 5.90 -2.93 -0.02 1.20 16 25 C -0.12 -1.02 4.04 -27.29 -0.11 -1.13 16 26 H 0.03 0.29 6.07 -51.93 -0.32 -0.03 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.48 6.97 -51.93 -0.36 0.12 16 30 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.03 0.20 6.80 -51.93 -0.35 -0.15 16 32 H 0.06 0.47 6.95 -51.93 -0.36 0.11 16 33 H 0.06 0.58 5.66 -51.93 -0.29 0.28 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.69 6.05 -51.93 -0.31 0.38 16 36 H 0.08 0.62 8.07 -51.92 -0.42 0.20 16 37 H 0.09 1.00 6.75 -51.93 -0.35 0.65 16 38 H 0.13 1.79 6.23 -51.92 -0.32 1.47 16 39 H 0.13 1.81 7.55 -51.92 -0.39 1.42 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.91 7.20 -51.93 -0.37 0.54 16 47 H 0.09 0.72 7.80 -51.93 -0.41 0.31 16 48 H 0.06 0.47 7.27 -51.93 -0.38 0.09 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.72 370.15 -10.90 -44.62 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.32 Total: -1.61 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 0.08 Total: -24.20 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.74 Total: -43.81 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.91 Total: -35.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.57 Total: 38.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.72 -10.90 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428845576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.940 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds