Wall clock time and date at job start Tue Mar 31 2020 12:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46807 * 2 1 4 4 C 1.46901 * 111.00281 * 75.74996 * 3 2 1 5 5 C 1.52990 * 109.47379 * 189.99623 * 4 3 2 6 6 N 1.46504 * 109.47237 * 180.02562 * 5 4 3 7 7 S 1.65603 * 120.00092 * 165.00184 * 6 5 4 8 8 O 1.42099 * 104.27800 * 181.07031 * 7 6 5 9 9 O 1.42103 * 104.27626 * 308.92857 * 7 6 5 10 10 C 1.81400 * 104.44895 * 65.00086 * 7 6 5 11 11 C 1.53005 * 109.47221 * 180.02562 * 10 7 6 12 12 C 1.52995 * 109.46679 * 300.00060 * 11 10 7 13 13 C 1.53008 * 109.46976 * 59.99798 * 11 10 7 14 14 C 1.50697 * 109.47035 * 179.97438 * 11 10 7 15 15 H 1.07998 * 120.00531 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99841 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99815 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 120.00180 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47236 * 59.99595 * 18 16 14 20 20 H 1.48491 * 109.47280 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47064 * 300.00145 * 18 16 14 22 22 C 1.46898 * 110.99811 * 199.70201 * 3 2 1 23 23 C 1.53009 * 117.49975 * 133.87513 * 22 3 2 24 24 C 1.53005 * 117.49919 * 65.21841 * 22 3 2 25 25 H 1.08995 * 109.47643 * 294.84367 * 1 2 3 26 26 H 1.09008 * 109.47124 * 54.84637 * 1 2 3 27 27 H 1.09008 * 109.47079 * 174.83873 * 1 2 3 28 28 H 1.09004 * 109.46860 * 119.99361 * 2 1 3 29 29 H 1.08997 * 109.47254 * 240.00126 * 2 1 3 30 30 H 1.09004 * 109.47093 * 310.00162 * 4 3 2 31 31 H 1.09008 * 109.47110 * 69.99605 * 4 3 2 32 32 H 1.09000 * 109.47614 * 299.99822 * 5 4 3 33 33 H 1.09004 * 109.47213 * 60.00364 * 5 4 3 34 34 H 0.96996 * 119.99745 * 345.00119 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99845 * 10 7 6 36 36 H 1.09000 * 109.47244 * 60.00021 * 10 7 6 37 37 H 1.08995 * 109.47501 * 60.00259 * 12 11 10 38 38 H 1.09005 * 109.46808 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.47145 * 299.99715 * 12 11 10 40 40 H 1.09001 * 109.46906 * 59.99890 * 13 11 10 41 41 H 1.08992 * 109.46761 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.46962 * 300.00131 * 13 11 10 43 43 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 44 44 H 1.08999 * 115.55613 * 279.54540 * 22 3 2 45 45 H 1.08999 * 117.49328 * 359.97438 * 23 22 3 46 46 H 1.08993 * 117.49531 * 145.01986 * 23 22 3 47 47 H 1.08999 * 117.49766 * 214.98280 * 24 22 3 48 48 H 1.09001 * 117.49700 * 359.96897 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8768 1.9939 1.3292 5 6 2.1585 3.4947 1.2356 6 7 2.0167 4.1019 2.5614 7 16 2.6140 5.6202 2.8450 8 8 2.3223 5.8613 4.2146 9 8 3.9559 5.5612 2.3811 10 6 1.6201 6.7034 1.7823 11 6 2.0820 8.1517 1.9559 12 6 1.9075 8.5709 3.4169 13 6 3.5567 8.2670 1.5648 14 6 1.2567 9.0514 1.0725 15 1 0.4807 8.6323 0.4493 16 6 1.4924 10.4099 1.0600 17 7 2.4370 10.9204 1.8193 18 14 0.4690 11.5253 -0.0344 19 1 -0.9624 11.4130 0.3447 20 1 0.9165 12.9310 0.1349 21 1 0.6387 11.1187 -1.4526 22 6 3.4123 1.4510 -0.4623 23 6 3.7647 2.5264 -1.4921 24 6 3.6945 1.0565 -1.9135 25 1 -0.3634 0.4317 0.9325 26 1 -0.3634 0.5917 -0.8403 27 1 -0.3634 -1.0236 -0.0925 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 0.8616 1.8368 1.6937 31 1 2.5853 1.5335 2.0178 32 1 3.1737 3.6519 0.8712 33 1 1.4500 3.9552 0.5471 34 1 1.5730 3.6145 3.2730 35 1 1.7448 6.4049 0.7413 36 1 0.5695 6.6209 2.0606 37 1 2.5048 7.9200 4.0554 38 1 2.2362 9.6028 3.5405 39 1 0.8569 8.4887 3.6955 40 1 3.6810 7.9682 0.5239 41 1 3.8859 9.2986 1.6889 42 1 4.1539 7.6161 2.2034 43 1 2.6031 11.8760 1.8102 44 1 4.1675 1.2013 0.2829 45 1 2.9629 3.1846 -1.8268 46 1 4.7517 2.9838 -1.4244 47 1 4.6353 0.5474 -2.1228 48 1 2.8466 0.7475 -2.5249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451154629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:34 Heat of formation + Delta-G solvation = -47.594790 kcal Electronic energy + Delta-G solvation = -26138.868106 eV Core-core repulsion = 22549.902561 eV Total energy + Delta-G solvation = -3588.965545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.05648 -36.52934 -36.24955 -35.70162 -35.25304 -34.48085 -31.64691 -30.70819 -27.48571 -26.58285 -25.69349 -25.20628 -23.03022 -22.85604 -22.09461 -20.41874 -19.54614 -18.73422 -17.34493 -16.61616 -16.09874 -15.97607 -15.73888 -15.28683 -14.94153 -14.72997 -14.60178 -14.14521 -13.93706 -13.22410 -13.05535 -13.00623 -12.76378 -12.48022 -12.13163 -12.06616 -11.98473 -11.96162 -11.62237 -11.43025 -11.31867 -11.12333 -11.03639 -10.99845 -10.90499 -10.67869 -10.55165 -10.38772 -10.28855 -10.25190 -10.08504 -9.63140 -9.58739 -9.20952 -8.65836 -8.63517 -8.38125 -6.01554 -4.13469 0.89598 3.12269 3.28447 3.33829 3.35577 3.56336 3.64210 4.31691 4.40260 4.63015 4.72953 4.77863 4.80540 4.87895 4.92800 4.99663 5.11956 5.23667 5.26416 5.32898 5.43623 5.50267 5.54519 5.56006 5.71142 5.74190 5.79932 5.82422 5.87217 5.98171 6.06380 6.08904 6.40872 6.72640 6.74744 6.82011 6.86476 6.93006 7.04536 7.16410 7.33840 7.52703 7.69601 8.00138 8.11608 8.35084 8.84837 9.51777 10.99761 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003452 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.637273 B = 8110.344612 C = 8688.815158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.510 5.510 4 C 0.053 3.947 5 C 0.119 3.881 6 N -1.132 6.132 7 S 2.596 3.404 8 O -0.966 6.966 9 O -0.964 6.964 10 C -0.581 4.581 11 C 0.082 3.918 12 C -0.164 4.164 13 C -0.163 4.163 14 C -0.502 4.502 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.003 4.003 23 C -0.161 4.161 24 C -0.172 4.172 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.027 0.973 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.094 0.906 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -20.588 -4.127 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 N -0.235 5.235 4 C -0.076 4.076 5 C -0.008 4.008 6 N -0.889 5.889 7 S 2.694 3.306 8 O -0.957 6.957 9 O -0.954 6.954 10 C -0.715 4.715 11 C 0.080 3.920 12 C -0.222 4.222 13 C -0.221 4.221 14 C -0.541 4.541 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.112 4.112 23 C -0.199 4.199 24 C -0.209 4.209 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.623 -19.886 -3.948 20.284 hybrid contribution -0.862 -0.012 -0.203 0.886 sum -1.485 -19.898 -4.152 20.380 Atomic orbital electron populations 1.21801 0.94740 1.01481 1.02620 1.22056 0.96051 0.88284 1.01053 1.61722 1.18052 1.18070 1.25653 1.22269 1.01888 0.94154 0.89300 1.21183 1.02742 0.93265 0.83569 1.55818 1.77807 1.36041 1.19250 1.05544 0.75974 0.73280 0.75850 1.93550 1.85917 1.84001 1.32194 1.93534 1.33701 1.85248 1.82929 1.30511 1.13624 1.13390 1.13939 1.17924 0.93997 0.85130 0.94954 1.22275 0.99665 1.04862 0.95354 1.22268 0.96253 1.04465 0.99088 1.20911 1.17818 0.91321 1.24096 0.92352 1.24936 0.95237 0.98004 0.95553 1.69791 1.31043 1.12620 1.38764 0.86596 0.80487 0.79586 0.80948 1.20294 1.21209 1.20256 1.22480 0.89882 1.06465 0.92377 1.23151 1.03229 0.91839 1.01677 1.23033 1.02803 0.98935 0.96128 0.92732 0.91656 0.92378 0.94695 0.90594 0.89869 0.93941 0.90028 0.91041 0.75804 0.86423 0.86287 0.95394 0.88647 0.94488 0.94474 0.88708 0.95338 0.92709 0.89358 0.87782 0.88332 0.88817 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.95 37.16 0.37 -0.69 16 2 C 0.05 0.42 5.67 -3.82 -0.02 0.40 16 3 N -0.51 -4.87 4.56 -226.64 -1.03 -5.90 16 4 C 0.05 0.53 4.93 -3.83 -0.02 0.51 16 5 C 0.12 1.46 6.03 -4.04 -0.02 1.43 16 6 N -1.13 -15.37 5.89 -10.61 -0.06 -15.43 16 7 S 2.60 48.11 4.49 -107.50 -0.48 47.63 16 8 O -0.97 -20.35 15.70 -57.54 -0.90 -21.25 16 9 O -0.96 -20.26 15.12 -57.54 -0.87 -21.13 16 10 C -0.58 -11.35 5.01 37.16 0.19 -11.17 16 11 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 12 C -0.16 -4.06 7.78 37.15 0.29 -3.78 16 13 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 14 C -0.50 -13.22 8.01 -34.44 -0.28 -13.49 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 18 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.00 -0.03 4.20 -67.71 -0.28 -0.32 16 23 C -0.16 -1.57 9.69 -26.69 -0.26 -1.83 16 24 C -0.17 -1.40 9.62 -26.69 -0.26 -1.65 16 25 H 0.05 0.40 6.96 -51.93 -0.36 0.04 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.03 0.27 8.00 -51.93 -0.42 -0.15 16 29 H 0.08 0.55 7.06 -51.93 -0.37 0.19 16 30 H 0.08 0.73 6.72 -51.93 -0.35 0.39 16 31 H 0.04 0.42 8.11 -51.92 -0.42 0.00 16 32 H 0.08 1.09 6.38 -51.93 -0.33 0.76 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.41 4.64 8.62 -34.47 -0.30 4.34 16 35 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 38 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 42 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 45 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.78 7.93 -51.93 -0.41 0.36 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -31.32 378.71 -10.67 -41.99 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.34 Total: 7.20 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -0.18 Total: -30.78 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.58 Total: -45.04 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.77 Total: -42.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.48 Total: 47.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.32 -10.67 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451154629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.606 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds