Wall clock time and date at job start Tue Mar 31 2020 12:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46807 * 2 1 4 4 C 1.46901 * 111.00281 * 75.74996 * 3 2 1 5 5 C 1.52990 * 109.47379 * 189.99623 * 4 3 2 6 6 N 1.46504 * 109.47237 * 180.02562 * 5 4 3 7 7 S 1.65603 * 120.00092 * 165.00184 * 6 5 4 8 8 O 1.42099 * 104.27800 * 181.07031 * 7 6 5 9 9 O 1.42103 * 104.27626 * 308.92857 * 7 6 5 10 10 C 1.81400 * 104.44895 * 65.00086 * 7 6 5 11 11 C 1.53005 * 109.47221 * 180.02562 * 10 7 6 12 12 C 1.52995 * 109.46679 * 300.00060 * 11 10 7 13 13 C 1.53008 * 109.46976 * 59.99798 * 11 10 7 14 14 C 1.50697 * 109.47035 * 179.97438 * 11 10 7 15 15 H 1.07998 * 120.00531 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99841 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99815 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 120.00180 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47236 * 59.99595 * 18 16 14 20 20 H 1.48491 * 109.47280 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47064 * 300.00145 * 18 16 14 22 22 C 1.46898 * 110.99811 * 199.70201 * 3 2 1 23 23 C 1.53009 * 117.49975 * 133.87513 * 22 3 2 24 24 C 1.53005 * 117.49919 * 65.21841 * 22 3 2 25 25 H 1.08995 * 109.47643 * 294.84367 * 1 2 3 26 26 H 1.09008 * 109.47124 * 54.84637 * 1 2 3 27 27 H 1.09008 * 109.47079 * 174.83873 * 1 2 3 28 28 H 1.09004 * 109.46860 * 119.99361 * 2 1 3 29 29 H 1.08997 * 109.47254 * 240.00126 * 2 1 3 30 30 H 1.09004 * 109.47093 * 310.00162 * 4 3 2 31 31 H 1.09008 * 109.47110 * 69.99605 * 4 3 2 32 32 H 1.09000 * 109.47614 * 299.99822 * 5 4 3 33 33 H 1.09004 * 109.47213 * 60.00364 * 5 4 3 34 34 H 0.96996 * 119.99745 * 345.00119 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99845 * 10 7 6 36 36 H 1.09000 * 109.47244 * 60.00021 * 10 7 6 37 37 H 1.08995 * 109.47501 * 60.00259 * 12 11 10 38 38 H 1.09005 * 109.46808 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.47145 * 299.99715 * 12 11 10 40 40 H 1.09001 * 109.46906 * 59.99890 * 13 11 10 41 41 H 1.08992 * 109.46761 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.46962 * 300.00131 * 13 11 10 43 43 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 44 44 H 1.08999 * 115.55613 * 279.54540 * 22 3 2 45 45 H 1.08999 * 117.49328 * 359.97438 * 23 22 3 46 46 H 1.08993 * 117.49531 * 145.01986 * 23 22 3 47 47 H 1.08999 * 117.49766 * 214.98280 * 24 22 3 48 48 H 1.09001 * 117.49700 * 359.96897 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8768 1.9939 1.3292 5 6 2.1585 3.4947 1.2356 6 7 2.0167 4.1019 2.5614 7 16 2.6140 5.6202 2.8450 8 8 2.3223 5.8613 4.2146 9 8 3.9559 5.5612 2.3811 10 6 1.6201 6.7034 1.7823 11 6 2.0820 8.1517 1.9559 12 6 1.9075 8.5709 3.4169 13 6 3.5567 8.2670 1.5648 14 6 1.2567 9.0514 1.0725 15 1 0.4807 8.6323 0.4493 16 6 1.4924 10.4099 1.0600 17 7 2.4370 10.9204 1.8193 18 14 0.4690 11.5253 -0.0344 19 1 -0.9624 11.4130 0.3447 20 1 0.9165 12.9310 0.1349 21 1 0.6387 11.1187 -1.4526 22 6 3.4123 1.4510 -0.4623 23 6 3.7647 2.5264 -1.4921 24 6 3.6945 1.0565 -1.9135 25 1 -0.3634 0.4317 0.9325 26 1 -0.3634 0.5917 -0.8403 27 1 -0.3634 -1.0236 -0.0925 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 0.8616 1.8368 1.6937 31 1 2.5853 1.5335 2.0178 32 1 3.1737 3.6519 0.8712 33 1 1.4500 3.9552 0.5471 34 1 1.5730 3.6145 3.2730 35 1 1.7448 6.4049 0.7413 36 1 0.5695 6.6209 2.0606 37 1 2.5048 7.9200 4.0554 38 1 2.2362 9.6028 3.5405 39 1 0.8569 8.4887 3.6955 40 1 3.6810 7.9682 0.5239 41 1 3.8859 9.2986 1.6889 42 1 4.1539 7.6161 2.2034 43 1 2.6031 11.8760 1.8102 44 1 4.1675 1.2013 0.2829 45 1 2.9629 3.1846 -1.8268 46 1 4.7517 2.9838 -1.4244 47 1 4.6353 0.5474 -2.1228 48 1 2.8466 0.7475 -2.5249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451154629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:33 Heat of formation + Delta-G solvation = -68.931364 kcal Electronic energy + Delta-G solvation = -26139.793329 eV Core-core repulsion = 22549.902561 eV Total energy + Delta-G solvation = -3589.890768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.78507 -38.12183 -38.10045 -36.92548 -36.59639 -35.28521 -33.62154 -31.44735 -28.44954 -28.16574 -27.67809 -27.23119 -23.86993 -23.55986 -22.77663 -21.43705 -21.05657 -20.21151 -18.78721 -17.90099 -17.54620 -17.12117 -16.90016 -16.62771 -16.48470 -16.07230 -15.46912 -15.15081 -14.83465 -14.83219 -14.61093 -14.40632 -13.93566 -13.83155 -13.59897 -13.34284 -13.04806 -12.88164 -12.85446 -12.77463 -12.76689 -12.62433 -12.49458 -12.31460 -12.24014 -12.15645 -12.12352 -11.95528 -11.67001 -11.55166 -11.38027 -11.24437 -10.99840 -10.67744 -10.39885 -10.29980 -9.34709 -8.01749 -6.20329 -0.60081 1.46510 1.46688 1.54023 1.86630 2.45421 2.79314 2.86895 2.90955 3.20459 3.34463 3.84045 3.99933 4.03575 4.08529 4.12022 4.18814 4.23021 4.28952 4.41274 4.53021 4.61498 4.66278 4.72745 4.75590 4.84300 4.87588 4.88203 4.93652 4.95605 5.01216 5.09710 5.12750 5.15882 5.16900 5.35248 5.40018 5.43539 5.52255 5.65746 5.98849 6.03179 6.12453 6.14482 6.18529 6.35560 6.84226 7.47867 8.97974 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003452 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.637273 B = 8110.344612 C = 8688.815158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.516 5.516 4 C 0.057 3.943 5 C 0.113 3.887 6 N -1.113 6.113 7 S 2.617 3.383 8 O -0.992 6.992 9 O -0.991 6.991 10 C -0.585 4.585 11 C 0.069 3.931 12 C -0.160 4.160 13 C -0.158 4.158 14 C -0.518 4.518 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.908 5.908 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.271 1.271 22 C -0.011 4.011 23 C -0.177 4.177 24 C -0.153 4.153 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.423 0.577 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -22.504 -5.037 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.072 4.072 5 C -0.013 4.013 6 N -0.875 5.875 7 S 2.714 3.286 8 O -0.983 6.983 9 O -0.980 6.980 10 C -0.718 4.718 11 C 0.067 3.933 12 C -0.218 4.218 13 C -0.216 4.216 14 C -0.557 4.557 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.547 5.547 18 Si 0.780 3.220 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.120 4.120 23 C -0.215 4.215 24 C -0.190 4.190 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.259 0.741 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.125 0.875 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.878 -21.810 -4.856 22.423 hybrid contribution -0.461 0.515 0.071 0.695 sum -2.340 -21.295 -4.784 21.951 Atomic orbital electron populations 1.21780 0.94134 1.02233 1.02170 1.22123 0.96473 0.87298 1.01564 1.61723 1.17982 1.19187 1.25228 1.22220 1.02815 0.92378 0.89818 1.21356 1.02402 0.94996 0.82556 1.55295 1.77517 1.34156 1.20508 1.04623 0.75282 0.73963 0.74760 1.93507 1.86143 1.84940 1.33676 1.93500 1.35435 1.85948 1.83155 1.30444 1.14877 1.10807 1.15646 1.17920 0.93419 0.87904 0.94047 1.22210 0.99810 1.03512 0.96282 1.22192 0.97052 1.02977 0.99414 1.21271 1.18091 0.91962 1.24371 0.91881 1.25676 0.96244 0.99474 0.96778 1.69936 1.32215 1.12652 1.39889 0.85674 0.79171 0.77667 0.79473 1.19726 1.21353 1.19666 1.22522 0.89972 1.06560 0.92957 1.23142 1.02788 0.92683 1.02858 1.23075 1.03561 0.97412 0.94976 0.92829 0.92482 0.90992 0.94312 0.89947 0.88336 0.93822 0.91256 0.90176 0.74095 0.84657 0.84440 0.94924 0.91036 0.94109 0.94122 0.91124 0.94880 0.92940 0.89722 0.88684 0.88722 0.87451 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.95 71.98 0.72 -1.01 16 2 C 0.05 0.70 5.67 86.30 0.49 1.19 16 3 N -0.52 -8.83 4.56 -870.97 -3.97 -12.80 16 4 C 0.06 1.01 4.93 86.30 0.43 1.44 16 5 C 0.11 2.56 6.03 86.38 0.52 3.09 16 6 N -1.11 -28.08 5.89 -187.49 -1.10 -29.18 16 7 S 2.62 94.20 4.49 -56.49 -0.25 93.94 16 8 O -0.99 -40.93 15.70 -127.65 -2.00 -42.93 16 9 O -0.99 -41.12 15.12 -127.65 -1.93 -43.05 16 10 C -0.59 -22.06 5.01 71.98 0.36 -21.70 16 11 C 0.07 3.34 0.52 -52.93 -0.03 3.32 16 12 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 13 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 14 C -0.52 -26.99 8.01 25.60 0.21 -26.79 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 16 C 0.02 0.94 5.15 84.66 0.44 1.37 16 17 N -0.91 -50.50 9.35 21.45 0.20 -50.30 16 18 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.01 -0.20 4.20 44.92 0.19 -0.01 16 23 C -0.18 -3.31 9.69 30.62 0.30 -3.02 16 24 C -0.15 -2.22 9.62 30.62 0.29 -1.92 16 25 H 0.05 0.64 6.96 -2.39 -0.02 0.63 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.04 0.50 8.00 -2.38 -0.02 0.48 16 29 H 0.08 1.00 7.06 -2.39 -0.02 0.98 16 30 H 0.10 1.45 6.72 -2.39 -0.02 1.44 16 31 H 0.04 0.77 8.11 -2.38 -0.02 0.75 16 32 H 0.07 1.78 6.38 -2.39 -0.02 1.76 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.42 8.58 8.62 -96.75 -0.83 7.74 16 35 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 36 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 37 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 38 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 39 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 42 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 43 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.09 1.55 8.13 -2.39 -0.02 1.53 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.10 1.40 7.93 -2.39 -0.02 1.38 16 Total: -1.00 -66.23 378.71 -1.91 -68.14 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.10 Total: 30.82 kcal Atomic # 6 Polarization: -63.86 SS G_CDS: 5.02 Total: -58.83 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -4.88 Total: -92.29 kcal Atomic # 8 Polarization: -82.04 SS G_CDS: -3.93 Total: -85.98 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 94.20 SS G_CDS: -0.25 Total: 93.94 kcal Total: -66.23 -1.91 -68.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451154629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.796 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds