Wall clock time and date at job start Tue Mar 31 2020 12:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46817 * 2 1 4 4 C 1.46901 * 111.00512 * 301.61014 * 3 2 1 5 5 C 1.52999 * 109.46695 * 296.57010 * 4 3 2 6 6 C 1.46901 * 110.99894 * 65.56320 * 3 2 1 7 7 C 1.52992 * 109.47408 * 66.04450 * 6 3 2 8 8 H 1.09005 * 109.47666 * 295.00199 * 7 6 3 9 9 C 1.53003 * 109.47688 * 174.99944 * 7 6 3 10 10 N 1.46508 * 109.47346 * 54.99853 * 7 6 3 11 11 S 1.65595 * 120.00320 * 215.00238 * 10 7 6 12 12 O 1.42100 * 104.27717 * 308.92693 * 11 10 7 13 13 O 1.42100 * 104.27563 * 181.06757 * 11 10 7 14 14 C 1.81396 * 104.44988 * 64.99983 * 11 10 7 15 15 C 1.53001 * 109.47281 * 183.96485 * 14 11 10 16 16 C 1.50702 * 115.54950 * 299.02184 * 15 14 11 17 17 H 1.07995 * 119.99463 * 94.72708 * 16 15 14 18 18 C 1.37872 * 119.99875 * 274.45443 * 16 15 14 19 19 N 1.31514 * 120.00337 * 355.47513 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 175.47656 * 18 16 15 21 21 H 1.48501 * 109.46948 * 89.99500 * 20 18 16 22 22 H 1.48491 * 109.47575 * 210.00135 * 20 18 16 23 23 H 1.48505 * 109.46646 * 330.00155 * 20 18 16 24 24 C 1.53004 * 117.49777 * 84.69302 * 15 14 11 25 25 C 1.53003 * 117.49930 * 153.34970 * 15 14 11 26 26 H 1.08999 * 109.47283 * 64.91358 * 1 2 3 27 27 H 1.09000 * 109.46531 * 184.91275 * 1 2 3 28 28 H 1.08997 * 109.46996 * 304.90911 * 1 2 3 29 29 H 1.08993 * 109.47023 * 240.00227 * 2 1 3 30 30 H 1.09001 * 109.47062 * 119.99613 * 2 1 3 31 31 H 1.08997 * 109.46772 * 56.56320 * 4 3 2 32 32 H 1.08988 * 109.47314 * 176.56848 * 4 3 2 33 33 H 1.08998 * 109.47472 * 65.76789 * 5 4 3 34 34 H 1.09002 * 109.47474 * 185.77611 * 5 4 3 35 35 H 1.09004 * 109.46973 * 305.77027 * 5 4 3 36 36 H 1.08998 * 109.47144 * 306.04236 * 6 3 2 37 37 H 1.09005 * 109.47422 * 186.04486 * 6 3 2 38 38 H 1.08998 * 109.47598 * 180.02562 * 9 7 6 39 39 H 1.08995 * 109.46877 * 300.00247 * 9 7 6 40 40 H 1.09000 * 109.46678 * 59.99830 * 9 7 6 41 41 H 0.97003 * 119.99015 * 35.00024 * 10 7 6 42 42 H 1.09001 * 109.47386 * 63.96375 * 14 11 10 43 43 H 1.09002 * 109.46848 * 303.96634 * 14 11 10 44 44 H 0.96994 * 120.00419 * 185.00347 * 19 18 16 45 45 H 1.09004 * 117.49573 * 215.00351 * 24 15 14 46 46 H 1.08997 * 117.49594 * 0.02562 * 24 15 14 47 47 H 1.08999 * 117.49735 * 359.97438 * 25 15 14 48 48 H 1.09004 * 117.49611 * 144.97057 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5174 2.1210 -1.1679 5 6 2.0640 1.4828 -2.4465 6 6 1.6601 2.0704 1.2486 7 6 2.4027 1.4219 2.4185 8 1 2.0580 0.3953 2.5435 9 6 2.1264 2.2121 3.6991 10 7 3.8420 1.4236 2.1446 11 16 4.7838 0.1614 2.6564 12 8 4.4615 0.0193 4.0330 13 8 6.0970 0.5143 2.2440 14 6 4.1816 -1.2650 1.7112 15 6 4.9147 -2.5271 2.1700 16 6 6.4095 -2.5163 1.9790 17 1 7.0552 -2.2131 2.7899 18 6 6.9529 -2.8988 0.7710 19 7 6.1744 -3.3575 -0.1845 20 14 8.7951 -2.7656 0.4914 21 1 9.4514 -4.0318 0.9053 22 1 9.0607 -2.5179 -0.9484 23 1 9.3376 -1.6411 1.2955 24 6 4.3644 -3.2570 3.3970 25 6 4.1908 -3.8647 2.0029 26 1 -0.3634 0.4357 -0.9307 27 1 -0.3632 -1.0239 0.0880 28 1 -0.3633 0.5881 0.8427 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.4282 2.0835 -1.1801 32 1 1.8446 3.1591 -1.1114 33 1 1.6542 0.4786 -2.5553 34 1 1.7763 2.0878 -3.3064 35 1 3.1511 1.4273 -2.3888 36 1 0.5853 1.9897 1.4109 37 1 1.9392 3.1219 1.1793 38 1 2.6558 1.7503 4.5325 39 1 2.4711 3.2386 3.5742 40 1 1.0556 2.2108 3.9029 41 1 4.2431 2.1643 1.6635 42 1 4.3679 -1.1023 0.6496 43 1 3.1112 -1.3856 1.8778 44 1 6.5629 -3.6944 -1.0070 45 1 5.0837 -3.7293 4.0661 46 1 3.4800 -2.8382 3.8770 47 1 3.1921 -3.8454 1.5664 48 1 4.7957 -4.7367 1.7543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451429643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:39 Heat of formation + Delta-G solvation = -48.862286 kcal Electronic energy + Delta-G solvation = -27376.947468 eV Core-core repulsion = 23787.926961 eV Total energy + Delta-G solvation = -3589.020507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.97994 -36.68560 -36.20805 -35.55206 -34.92976 -31.96594 -31.34286 -30.34788 -29.10060 -28.15103 -25.43052 -25.30809 -24.05021 -21.29284 -21.12243 -19.79325 -19.66927 -18.58306 -17.01895 -16.39132 -16.26458 -15.99452 -15.58182 -14.95333 -14.65269 -14.39271 -14.17021 -14.02047 -13.70754 -13.23082 -13.11313 -12.90039 -12.75576 -12.32379 -12.19263 -12.08631 -11.97600 -11.74767 -11.61682 -11.40629 -11.30298 -11.15768 -11.03730 -11.00296 -10.94820 -10.86412 -10.66368 -10.47377 -10.42496 -10.36930 -10.01387 -9.59826 -9.10251 -8.96414 -8.46529 -8.26522 -8.01371 -6.06501 -4.18400 1.23141 3.34222 3.40897 3.52638 3.54202 3.87842 4.44100 4.62137 4.72178 4.86254 4.97887 5.09749 5.10714 5.15466 5.21893 5.24721 5.28899 5.29571 5.37721 5.44210 5.47941 5.52800 5.58196 5.70447 5.75573 5.89196 5.90572 5.95056 5.98224 6.05314 6.15178 6.28885 6.32945 6.34245 6.38680 6.48124 6.69082 6.77394 7.05575 7.05977 7.06844 7.29339 7.50760 7.51852 7.86208 8.26270 8.86829 9.53332 10.99821 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.005438 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.816695 B = 5147.713321 C = 5757.017270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.035 3.965 3 N -0.528 5.528 4 C 0.049 3.951 5 C -0.152 4.152 6 C 0.044 3.956 7 C 0.157 3.843 8 H 0.077 0.923 9 C -0.171 4.171 10 N -1.112 6.112 11 S 2.610 3.390 12 O -0.978 6.978 13 O -0.952 6.952 14 C -0.552 4.552 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.083 3.917 19 N -0.873 5.873 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.264 1.264 24 C -0.210 4.210 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.413 0.587 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.261 0.739 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 10.055 -1.262 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.093 4.093 3 N -0.251 5.251 4 C -0.078 4.078 5 C -0.209 4.209 6 C -0.085 4.085 7 C 0.049 3.951 8 H 0.095 0.905 9 C -0.230 4.230 10 N -0.868 5.868 11 S 2.707 3.293 12 O -0.968 6.968 13 O -0.942 6.942 14 C -0.684 4.684 15 C 0.039 3.961 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.247 4.247 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.246 0.754 42 H 0.151 0.849 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.506 9.994 -0.770 16.027 hybrid contribution -0.380 0.002 -1.062 1.128 sum -12.886 9.996 -1.832 16.411 Atomic orbital electron populations 1.22430 0.98560 1.02490 1.01701 1.22427 0.92574 0.90238 1.04059 1.62211 1.59220 1.02164 1.01514 1.22086 0.97233 0.97818 0.90704 1.21808 1.02682 1.00595 0.95833 1.22498 0.97745 0.98728 0.89575 1.20627 0.81112 0.99814 0.93569 0.90546 1.22311 1.01560 1.00927 0.98211 1.55789 1.17075 1.38900 1.75076 1.04987 0.73826 0.75246 0.75286 1.93486 1.84897 1.86586 1.31808 1.93547 1.35502 1.81687 1.83491 1.30057 1.06972 1.16398 1.14989 1.18284 0.93879 0.87537 0.96389 1.20512 0.88455 1.47653 0.98514 0.91530 1.24919 0.98162 0.93750 0.95379 1.69997 1.34830 1.39625 1.06423 0.86622 0.85329 0.78835 0.77739 1.20607 1.20971 1.18864 1.23182 1.02140 1.07602 0.91823 1.22484 0.99030 0.99164 0.96604 0.92507 0.91930 0.92548 0.89762 0.90168 0.94769 0.91124 0.92645 0.92671 0.91334 0.93486 0.90224 0.90455 0.92226 0.92169 0.75435 0.84875 0.88854 0.92888 0.89698 0.91051 0.91853 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.18 37.16 0.34 -1.54 16 2 C 0.03 0.41 5.57 -3.82 -0.02 0.39 16 3 N -0.53 -6.00 4.46 -234.64 -1.05 -7.05 16 4 C 0.05 0.48 5.35 -3.82 -0.02 0.46 16 5 C -0.15 -1.54 9.61 37.16 0.36 -1.18 16 6 C 0.04 0.45 4.42 -3.83 -0.02 0.43 16 7 C 0.16 1.95 2.46 -67.93 -0.17 1.79 16 8 H 0.08 0.97 5.73 -51.93 -0.30 0.67 16 9 C -0.17 -1.93 9.52 37.16 0.35 -1.58 16 10 N -1.11 -16.82 5.08 -4.89 -0.02 -16.84 16 11 S 2.61 53.53 5.07 -107.50 -0.54 52.99 16 12 O -0.98 -21.56 17.11 -57.54 -0.98 -22.54 16 13 O -0.95 -23.40 17.47 -57.54 -1.01 -24.41 16 14 C -0.55 -11.45 5.35 37.16 0.20 -11.25 16 15 C 0.04 1.01 1.48 -155.66 -0.23 0.78 16 16 C -0.51 -14.23 7.83 -34.44 -0.27 -14.50 16 17 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 18 C 0.08 2.29 5.43 -17.82 -0.10 2.19 16 19 N -0.87 -24.12 12.63 55.43 0.70 -23.42 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.26 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.21 -4.63 9.95 -26.69 -0.27 -4.90 16 25 C -0.13 -3.05 9.13 -26.69 -0.24 -3.30 16 26 H 0.06 0.52 6.58 -51.93 -0.34 0.18 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.51 6.21 -51.93 -0.32 0.19 16 29 H 0.08 1.08 6.60 -51.93 -0.34 0.74 16 30 H 0.08 1.04 3.78 -51.93 -0.20 0.85 16 31 H 0.03 0.31 6.20 -51.93 -0.32 -0.02 16 32 H 0.07 0.64 7.98 -51.94 -0.41 0.22 16 33 H 0.05 0.58 6.82 -51.93 -0.35 0.22 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.42 6.11 -51.93 -0.32 0.10 16 37 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 38 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.41 5.69 8.80 -34.47 -0.30 5.39 16 42 H 0.13 2.90 8.14 -51.92 -0.42 2.48 16 43 H 0.09 1.63 5.46 -51.92 -0.28 1.34 16 44 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 45 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 46 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -32.18 381.18 -10.33 -42.52 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.07 Total: 8.37 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: -0.08 Total: -32.20 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.37 Total: -47.31 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.99 Total: -46.95 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.54 Total: 52.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.18 -10.33 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451429643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.347 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds