Wall clock time and date at job start Tue Mar 31 2020 12:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46817 * 2 1 4 4 C 1.46901 * 111.00512 * 301.61014 * 3 2 1 5 5 C 1.52999 * 109.46695 * 296.57010 * 4 3 2 6 6 C 1.46901 * 110.99894 * 65.56320 * 3 2 1 7 7 C 1.52992 * 109.47408 * 66.04450 * 6 3 2 8 8 H 1.09005 * 109.47666 * 295.00199 * 7 6 3 9 9 C 1.53003 * 109.47688 * 174.99944 * 7 6 3 10 10 N 1.46508 * 109.47346 * 54.99853 * 7 6 3 11 11 S 1.65595 * 120.00320 * 215.00238 * 10 7 6 12 12 O 1.42100 * 104.27717 * 308.92693 * 11 10 7 13 13 O 1.42100 * 104.27563 * 181.06757 * 11 10 7 14 14 C 1.81396 * 104.44988 * 64.99983 * 11 10 7 15 15 C 1.53001 * 109.47281 * 183.96485 * 14 11 10 16 16 C 1.50702 * 115.54950 * 299.02184 * 15 14 11 17 17 H 1.07995 * 119.99463 * 94.72708 * 16 15 14 18 18 C 1.37872 * 119.99875 * 274.45443 * 16 15 14 19 19 N 1.31514 * 120.00337 * 355.47513 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 175.47656 * 18 16 15 21 21 H 1.48501 * 109.46948 * 89.99500 * 20 18 16 22 22 H 1.48491 * 109.47575 * 210.00135 * 20 18 16 23 23 H 1.48505 * 109.46646 * 330.00155 * 20 18 16 24 24 C 1.53004 * 117.49777 * 84.69302 * 15 14 11 25 25 C 1.53003 * 117.49930 * 153.34970 * 15 14 11 26 26 H 1.08999 * 109.47283 * 64.91358 * 1 2 3 27 27 H 1.09000 * 109.46531 * 184.91275 * 1 2 3 28 28 H 1.08997 * 109.46996 * 304.90911 * 1 2 3 29 29 H 1.08993 * 109.47023 * 240.00227 * 2 1 3 30 30 H 1.09001 * 109.47062 * 119.99613 * 2 1 3 31 31 H 1.08997 * 109.46772 * 56.56320 * 4 3 2 32 32 H 1.08988 * 109.47314 * 176.56848 * 4 3 2 33 33 H 1.08998 * 109.47472 * 65.76789 * 5 4 3 34 34 H 1.09002 * 109.47474 * 185.77611 * 5 4 3 35 35 H 1.09004 * 109.46973 * 305.77027 * 5 4 3 36 36 H 1.08998 * 109.47144 * 306.04236 * 6 3 2 37 37 H 1.09005 * 109.47422 * 186.04486 * 6 3 2 38 38 H 1.08998 * 109.47598 * 180.02562 * 9 7 6 39 39 H 1.08995 * 109.46877 * 300.00247 * 9 7 6 40 40 H 1.09000 * 109.46678 * 59.99830 * 9 7 6 41 41 H 0.97003 * 119.99015 * 35.00024 * 10 7 6 42 42 H 1.09001 * 109.47386 * 63.96375 * 14 11 10 43 43 H 1.09002 * 109.46848 * 303.96634 * 14 11 10 44 44 H 0.96994 * 120.00419 * 185.00347 * 19 18 16 45 45 H 1.09004 * 117.49573 * 215.00351 * 24 15 14 46 46 H 1.08997 * 117.49594 * 0.02562 * 24 15 14 47 47 H 1.08999 * 117.49735 * 359.97438 * 25 15 14 48 48 H 1.09004 * 117.49611 * 144.97057 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5174 2.1210 -1.1679 5 6 2.0640 1.4828 -2.4465 6 6 1.6601 2.0704 1.2486 7 6 2.4027 1.4219 2.4185 8 1 2.0580 0.3953 2.5435 9 6 2.1264 2.2121 3.6991 10 7 3.8420 1.4236 2.1446 11 16 4.7838 0.1614 2.6564 12 8 4.4615 0.0193 4.0330 13 8 6.0970 0.5143 2.2440 14 6 4.1816 -1.2650 1.7112 15 6 4.9147 -2.5271 2.1700 16 6 6.4095 -2.5163 1.9790 17 1 7.0552 -2.2131 2.7899 18 6 6.9529 -2.8988 0.7710 19 7 6.1744 -3.3575 -0.1845 20 14 8.7951 -2.7656 0.4914 21 1 9.4514 -4.0318 0.9053 22 1 9.0607 -2.5179 -0.9484 23 1 9.3376 -1.6411 1.2955 24 6 4.3644 -3.2570 3.3970 25 6 4.1908 -3.8647 2.0029 26 1 -0.3634 0.4357 -0.9307 27 1 -0.3632 -1.0239 0.0880 28 1 -0.3633 0.5881 0.8427 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.4282 2.0835 -1.1801 32 1 1.8446 3.1591 -1.1114 33 1 1.6542 0.4786 -2.5553 34 1 1.7763 2.0878 -3.3064 35 1 3.1511 1.4273 -2.3888 36 1 0.5853 1.9897 1.4109 37 1 1.9392 3.1219 1.1793 38 1 2.6558 1.7503 4.5325 39 1 2.4711 3.2386 3.5742 40 1 1.0556 2.2108 3.9029 41 1 4.2431 2.1643 1.6635 42 1 4.3679 -1.1023 0.6496 43 1 3.1112 -1.3856 1.8778 44 1 6.5629 -3.6944 -1.0070 45 1 5.0837 -3.7293 4.0661 46 1 3.4800 -2.8382 3.8770 47 1 3.1921 -3.8454 1.5664 48 1 4.7957 -4.7367 1.7543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451429643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:38 Heat of formation + Delta-G solvation = -72.047375 kcal Electronic energy + Delta-G solvation = -27377.952849 eV Core-core repulsion = 23787.926961 eV Total energy + Delta-G solvation = -3590.025888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.85320 -38.52711 -37.87873 -36.79272 -36.54119 -34.05043 -32.16238 -31.38357 -29.98568 -29.85158 -27.47326 -26.15061 -24.88755 -22.93866 -22.23483 -21.52388 -20.61271 -20.18852 -18.51746 -18.29360 -17.30444 -16.93245 -16.80246 -16.73746 -16.45629 -15.83218 -15.54012 -15.15569 -14.91583 -14.82700 -14.19626 -13.89913 -13.69425 -13.67171 -13.61876 -13.32846 -13.07400 -12.96925 -12.86383 -12.85345 -12.83139 -12.79521 -12.54602 -12.45840 -12.39225 -12.20990 -12.16852 -11.98071 -11.76059 -11.57757 -11.46174 -11.31038 -10.95313 -10.49641 -10.34161 -9.81085 -9.05917 -8.16415 -6.31913 -0.39083 1.35601 1.39589 1.52148 2.13230 2.40719 3.03202 3.05148 3.10243 3.39294 3.53616 3.80054 3.99109 4.06925 4.17771 4.25350 4.26928 4.36877 4.44506 4.45733 4.50897 4.55812 4.60616 4.66255 4.72365 4.74101 4.79676 4.88271 4.93778 5.00468 5.01249 5.08935 5.18915 5.20418 5.26436 5.31659 5.36133 5.45100 5.48255 5.50207 5.66077 5.73621 6.21261 6.24591 6.27908 6.36961 6.73809 7.40514 8.89155 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.005438 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.816695 B = 5147.713321 C = 5757.017270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.033 3.967 3 N -0.546 5.546 4 C 0.051 3.949 5 C -0.150 4.150 6 C 0.050 3.950 7 C 0.147 3.853 8 H 0.075 0.925 9 C -0.169 4.169 10 N -1.097 6.097 11 S 2.623 3.377 12 O -0.996 6.996 13 O -1.001 7.001 14 C -0.542 4.542 15 C 0.009 3.991 16 C -0.533 4.533 17 H 0.044 0.956 18 C 0.045 3.955 19 N -0.888 5.888 20 Si 0.928 3.072 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.278 1.278 24 C -0.198 4.198 25 C -0.129 4.129 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.420 0.580 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.264 0.736 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 11.302 -1.447 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.095 4.095 3 N -0.270 5.270 4 C -0.076 4.076 5 C -0.208 4.208 6 C -0.079 4.079 7 C 0.040 3.960 8 H 0.093 0.907 9 C -0.228 4.228 10 N -0.857 5.857 11 S 2.719 3.281 12 O -0.985 6.985 13 O -0.991 6.991 14 C -0.674 4.674 15 C 0.007 3.993 16 C -0.570 4.570 17 H 0.063 0.937 18 C -0.158 4.158 19 N -0.524 5.524 20 Si 0.754 3.246 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.235 4.235 25 C -0.168 4.168 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.256 0.744 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.852 11.231 -0.955 18.645 hybrid contribution 0.300 -0.354 -0.988 1.092 sum -14.552 10.876 -1.943 18.271 Atomic orbital electron populations 1.22356 0.96678 1.02855 1.02543 1.22344 0.94142 0.90517 1.02503 1.62176 1.60115 1.02164 1.02575 1.22109 0.97998 0.97921 0.89568 1.21792 1.01105 1.00733 0.97147 1.22484 0.98553 0.98979 0.87924 1.20981 0.79133 1.00501 0.95409 0.90719 1.22290 1.03182 1.01035 0.96331 1.55318 1.18271 1.37205 1.74900 1.04297 0.73206 0.75709 0.74858 1.93458 1.85049 1.87121 1.32921 1.93476 1.38968 1.82597 1.84076 1.29877 1.08623 1.15059 1.13862 1.18411 0.92779 0.89495 0.98649 1.20680 0.90518 1.47686 0.98114 0.93739 1.25445 1.01106 0.93844 0.95412 1.70034 1.35723 1.40081 1.06574 0.85999 0.82107 0.78690 0.77829 1.19251 1.19915 1.20358 1.23230 1.02640 1.06344 0.91272 1.22409 0.99496 0.97535 0.97351 0.91817 0.91934 0.91378 0.91524 0.91530 0.93307 0.90082 0.93344 0.91017 0.93623 0.91203 0.88700 0.93159 0.90998 0.89272 0.74438 0.86231 0.85548 0.92671 0.90268 0.88368 0.89565 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.18 71.98 0.66 -2.42 16 2 C 0.03 0.73 5.57 86.30 0.48 1.21 16 3 N -0.55 -11.20 4.46 -896.26 -3.99 -15.20 16 4 C 0.05 0.87 5.35 86.30 0.46 1.33 16 5 C -0.15 -2.87 9.61 71.98 0.69 -2.18 16 6 C 0.05 0.84 4.42 86.30 0.38 1.22 16 7 C 0.15 3.29 2.46 44.99 0.11 3.40 16 8 H 0.07 1.71 5.73 -2.38 -0.01 1.69 16 9 C -0.17 -3.36 9.52 71.98 0.69 -2.67 16 10 N -1.10 -31.94 5.08 -169.37 -0.86 -32.80 16 11 S 2.62 107.82 5.07 -56.49 -0.29 107.53 16 12 O -1.00 -43.69 17.11 -127.65 -2.18 -45.88 16 13 O -1.00 -50.51 17.47 -127.65 -2.23 -52.74 16 14 C -0.54 -22.34 5.35 71.98 0.38 -21.95 16 15 C 0.01 0.43 1.48 -52.92 -0.08 0.35 16 16 C -0.53 -30.17 7.83 25.60 0.20 -29.97 16 17 H 0.04 2.64 7.82 -2.91 -0.02 2.62 16 18 C 0.04 2.52 5.43 84.65 0.46 2.98 16 19 N -0.89 -49.55 12.63 21.45 0.27 -49.28 16 20 Si 0.93 45.40 29.54 68.60 2.03 47.42 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 24 C -0.20 -8.56 9.95 30.62 0.30 -8.25 16 25 C -0.13 -5.82 9.13 30.62 0.28 -5.54 16 26 H 0.06 0.97 6.58 -2.39 -0.02 0.95 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.97 6.21 -2.39 -0.01 0.95 16 29 H 0.07 1.68 6.60 -2.39 -0.02 1.67 16 30 H 0.07 1.62 3.78 -2.39 -0.01 1.61 16 31 H 0.05 0.70 6.20 -2.39 -0.01 0.68 16 32 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 33 H 0.05 0.97 6.82 -2.39 -0.02 0.96 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 0.92 6.11 -2.39 -0.01 0.90 16 37 H 0.09 1.35 7.97 -2.38 -0.02 1.33 16 38 H 0.05 1.29 7.42 -2.39 -0.02 1.27 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.42 11.14 8.80 -96.74 -0.85 10.29 16 42 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 43 H 0.13 4.23 5.46 -2.39 -0.01 4.22 16 44 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 45 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 46 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 47 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 48 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -70.38 381.18 -2.14 -72.52 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.10 Total: 30.94 kcal Atomic # 6 Polarization: -67.53 SS G_CDS: 5.02 Total: -62.51 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.58 Total: -97.28 kcal Atomic # 8 Polarization: -94.21 SS G_CDS: -4.41 Total: -98.62 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 107.82 SS G_CDS: -0.29 Total: 107.53 kcal Total: -70.38 -2.14 -72.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451429643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.470 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds