Wall clock time and date at job start Tue Mar 31 2020 12:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.46500 * 120.00575 * 275.00699 * 3 2 1 5 5 C 1.53005 * 109.46982 * 274.99949 * 4 3 2 6 6 C 1.53000 * 109.46990 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.46807 * 179.97438 * 6 5 4 8 8 C 1.46907 * 110.99869 * 170.00129 * 7 6 5 9 9 C 1.46904 * 111.00491 * 293.95271 * 7 6 5 10 10 S 1.65598 * 119.99738 * 95.00280 * 3 2 1 11 11 O 1.42102 * 104.28010 * 333.93282 * 10 3 2 12 12 O 1.42102 * 104.28032 * 206.07286 * 10 3 2 13 13 C 1.81407 * 104.44954 * 90.00236 * 10 3 2 14 14 C 1.53000 * 109.47074 * 186.50401 * 13 10 3 15 15 C 1.50705 * 115.54947 * 294.85200 * 14 13 10 16 16 H 1.07999 * 120.00189 * 115.00663 * 15 14 13 17 17 C 1.37877 * 119.99408 * 294.72967 * 15 14 13 18 18 N 1.31519 * 119.99575 * 174.95025 * 17 15 14 19 19 Si 1.86795 * 120.00410 * 354.94661 * 17 15 14 20 20 H 1.48499 * 109.47257 * 93.06448 * 19 17 15 21 21 H 1.48507 * 109.46841 * 213.06059 * 19 17 15 22 22 H 1.48496 * 109.47253 * 333.05760 * 19 17 15 23 23 C 1.52994 * 117.50252 * 80.51957 * 14 13 10 24 24 C 1.52993 * 117.49934 * 149.18120 * 14 13 10 25 25 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46770 * 299.99171 * 1 2 3 27 27 H 1.08995 * 109.47578 * 59.99742 * 1 2 3 28 28 H 1.09006 * 109.47093 * 240.00528 * 2 1 3 29 29 H 1.08998 * 109.47610 * 120.01020 * 2 1 3 30 30 H 1.08997 * 109.46736 * 34.99753 * 4 3 2 31 31 H 1.08999 * 109.47144 * 154.99675 * 4 3 2 32 32 H 1.09000 * 109.46878 * 299.99881 * 5 4 3 33 33 H 1.09000 * 109.47093 * 59.99443 * 5 4 3 34 34 H 1.08997 * 109.46956 * 299.99943 * 6 5 4 35 35 H 1.08999 * 109.46916 * 59.99861 * 6 5 4 36 36 H 1.08992 * 109.47276 * 59.99906 * 8 7 6 37 37 H 1.09003 * 109.47026 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46624 * 299.99751 * 8 7 6 39 39 H 1.09002 * 109.46630 * 59.99977 * 9 7 6 40 40 H 1.08989 * 109.47648 * 180.02562 * 9 7 6 41 41 H 1.09003 * 109.46576 * 300.00478 * 9 7 6 42 42 H 1.08994 * 109.47085 * 66.50106 * 13 10 3 43 43 H 1.08998 * 109.46906 * 306.50172 * 13 10 3 44 44 H 0.96995 * 119.99800 * 180.02562 * 18 17 15 45 45 H 1.08995 * 117.50453 * 215.00219 * 23 14 13 46 46 H 1.09008 * 117.49791 * 0.02562 * 23 14 13 47 47 H 1.09003 * 117.50154 * 359.97328 * 24 14 13 48 48 H 1.09008 * 117.50306 * 144.97118 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.5151 1.7841 -1.8918 6 6 3.6609 2.5435 -3.2120 7 7 4.9639 2.2321 -3.8146 8 6 5.0462 2.7494 -5.1871 9 6 6.0630 2.7512 -2.9897 10 16 2.4122 2.1200 1.4287 11 8 1.6210 1.4494 2.4000 12 8 2.2334 3.5054 1.1678 13 6 4.1698 1.7387 1.6660 14 6 4.6177 2.2337 3.0427 15 6 4.5828 3.7275 3.2393 16 1 3.9048 4.1617 3.9590 17 6 5.4207 4.5392 2.5043 18 7 5.3219 5.8470 2.6026 19 14 6.6961 3.7815 1.3692 20 1 6.1305 3.6577 0.0018 21 1 7.9011 4.6487 1.3299 22 1 7.0709 2.4361 1.8737 23 6 4.2894 1.3544 4.2509 24 6 5.7309 1.4545 3.7458 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8898 30 1 1.3616 1.8099 -1.9451 31 1 2.0921 3.1803 -1.0754 32 1 4.3116 2.0829 -1.2104 33 1 3.5811 0.7125 -2.0802 34 1 2.8643 2.2442 -3.8931 35 1 3.5946 3.6151 -3.0239 36 1 4.9159 3.8314 -5.1761 37 1 6.0211 2.5055 -5.6094 38 1 4.2630 2.2952 -5.7941 39 1 6.0189 2.2984 -1.9991 40 1 7.0160 2.5073 -3.4589 41 1 5.9694 3.8334 -2.8990 42 1 4.7568 2.2345 0.8929 43 1 4.3198 0.6610 1.6009 44 1 5.9110 6.4180 2.0853 45 1 4.0481 1.8562 5.1879 46 1 3.7546 0.4229 4.0649 47 1 6.1439 0.5888 3.2279 48 1 6.4383 2.0222 4.3503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451454212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:29 Heat of formation + Delta-G solvation = -67.856961 kcal Electronic energy + Delta-G solvation = -27186.111998 eV Core-core repulsion = 23596.267820 eV Total energy + Delta-G solvation = -3589.844178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.04545 -38.83872 -38.08699 -37.66537 -36.78134 -34.34945 -33.40808 -30.63025 -30.18539 -28.55888 -27.63533 -26.91523 -24.20497 -23.32290 -23.09669 -21.80687 -21.12396 -19.77179 -18.67289 -18.58798 -17.56767 -16.99437 -16.87898 -16.52836 -16.29517 -15.93604 -15.59005 -15.42960 -15.12574 -14.97390 -14.66115 -14.50706 -14.34002 -14.00919 -13.57728 -13.34533 -13.16631 -13.09182 -13.04303 -12.96408 -12.90485 -12.75470 -12.58079 -12.48774 -12.43822 -12.32446 -12.19247 -12.16999 -11.90048 -11.72140 -11.62467 -11.40920 -10.98077 -10.73825 -10.38534 -9.90475 -9.40233 -8.35024 -6.46161 -0.62541 1.22929 1.32122 1.46252 1.86893 2.30896 2.88140 2.92201 2.98771 3.18015 3.32839 3.60369 3.84306 3.97174 4.05572 4.10804 4.16272 4.29389 4.32469 4.35412 4.39901 4.43623 4.47502 4.54669 4.60465 4.63850 4.64640 4.70527 4.78404 4.81237 4.87973 4.91850 4.95549 4.99154 5.00347 5.11739 5.18737 5.25181 5.35694 5.43810 5.46383 5.57994 5.75979 5.96576 6.06588 6.19029 6.62466 7.24913 8.81221 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.007154 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.895847 B = 3912.963129 C = 5767.011701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 N -0.999 5.999 4 C 0.113 3.887 5 C -0.139 4.139 6 C 0.053 3.947 7 N -0.550 5.550 8 C 0.022 3.978 9 C 0.013 3.987 10 S 2.611 3.389 11 O -0.983 6.983 12 O -0.992 6.992 13 C -0.576 4.576 14 C -0.036 4.036 15 C -0.513 4.513 16 H 0.028 0.972 17 C 0.030 3.970 18 N -0.937 5.937 19 Si 0.911 3.089 20 H -0.254 1.254 21 H -0.291 1.291 22 H -0.208 1.208 23 C -0.174 4.174 24 C -0.159 4.159 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.013 0.987 42 H 0.114 0.886 43 H 0.158 0.842 44 H 0.267 0.733 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -15.705 -15.824 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.837 5.837 4 C -0.013 4.013 5 C -0.178 4.178 6 C -0.075 4.075 7 N -0.274 5.274 8 C -0.126 4.126 9 C -0.136 4.136 10 S 2.708 3.292 11 O -0.973 6.973 12 O -0.982 6.982 13 C -0.707 4.707 14 C -0.038 4.038 15 C -0.551 4.551 16 H 0.046 0.954 17 C -0.169 4.169 18 N -0.575 5.575 19 Si 0.733 3.267 20 H -0.180 1.180 21 H -0.218 1.218 22 H -0.130 1.130 23 C -0.211 4.211 24 C -0.198 4.198 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.031 0.969 42 H 0.132 0.868 43 H 0.176 0.824 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.531 -15.546 -15.381 22.014 hybrid contribution 1.049 1.680 -0.025 1.981 sum -1.482 -13.865 -15.406 20.779 Atomic orbital electron populations 1.22232 0.95899 1.03428 1.01718 1.21554 0.94988 0.80020 1.04782 1.57607 1.79991 1.24828 1.21269 1.21431 0.98644 0.96315 0.84906 1.22106 0.96575 1.03129 0.96038 1.22127 0.91994 0.97260 0.96145 1.62061 1.02591 1.59397 1.03358 1.22468 1.03822 0.97520 0.88741 1.22545 0.95506 0.97015 0.98511 1.04751 0.77844 0.73245 0.73312 1.93459 1.67047 1.76051 1.60754 1.93510 1.86113 1.34379 1.84174 1.30245 1.23933 1.11130 1.05391 1.18768 1.04804 0.92126 0.88113 1.20468 1.22160 0.89085 1.23345 0.95393 1.25866 0.98821 0.94616 0.97628 1.70062 1.39458 1.05236 1.42694 0.86305 0.78539 0.81828 0.80020 1.17951 1.21799 1.13009 1.23077 0.99366 1.00999 0.97679 1.23143 0.91083 1.01885 1.03641 0.89121 0.94801 0.91535 0.86730 0.90001 0.86537 0.91666 0.94046 0.88118 0.87794 0.96048 0.96116 0.90455 0.89662 0.92139 0.89715 0.96883 0.86814 0.82404 0.92382 0.90228 0.86999 0.86991 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 10.24 71.98 0.74 -2.75 16 2 C 0.11 2.25 5.98 86.38 0.52 2.76 16 3 N -1.00 -28.27 2.71 -515.79 -1.40 -29.67 16 4 C 0.11 2.83 5.66 86.38 0.49 3.32 16 5 C -0.14 -3.20 5.46 30.60 0.17 -3.03 16 6 C 0.05 1.14 4.96 86.30 0.43 1.57 16 7 N -0.55 -11.87 5.02 -948.84 -4.76 -16.63 16 8 C 0.02 0.37 9.57 127.69 1.22 1.59 16 9 C 0.01 0.31 9.32 127.69 1.19 1.50 16 10 S 2.61 106.79 5.10 -56.49 -0.29 106.50 16 11 O -0.98 -42.48 16.75 -127.65 -2.14 -44.61 16 12 O -0.99 -51.37 16.21 -127.65 -2.07 -53.44 16 13 C -0.58 -21.93 5.66 71.98 0.41 -21.52 16 14 C -0.04 -1.62 0.79 -52.93 -0.04 -1.66 16 15 C -0.51 -30.06 8.76 25.60 0.22 -29.83 16 16 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 17 C 0.03 1.79 5.47 84.65 0.46 2.25 16 18 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 19 Si 0.91 41.96 24.94 68.60 1.71 43.67 16 20 H -0.25 -10.84 7.02 99.48 0.70 -10.14 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.21 -8.27 5.76 99.48 0.57 -7.69 16 23 C -0.17 -6.88 9.96 30.62 0.30 -6.57 16 24 C -0.16 -6.02 8.08 30.61 0.25 -5.77 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.03 0.89 7.90 -2.39 -0.02 0.87 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.11 1.47 8.11 -2.38 -0.02 1.45 16 29 H 0.08 1.63 7.61 -2.39 -0.02 1.61 16 30 H 0.12 2.05 8.11 -2.39 -0.02 2.03 16 31 H 0.06 2.06 6.82 -2.39 -0.02 2.04 16 32 H 0.04 1.16 5.63 -2.39 -0.01 1.15 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 1.65 8.06 -2.39 -0.02 1.63 16 35 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 39 H 0.06 1.63 6.47 -2.39 -0.02 1.61 16 40 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.11 4.41 4.07 -2.39 -0.01 4.40 16 43 H 0.16 4.31 8.09 -2.39 -0.02 4.29 16 44 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 45 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 47 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 48 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -80.36 387.47 -1.53 -81.89 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.76 Total: 30.51 kcal Atomic # 6 Polarization: -64.50 SS G_CDS: 6.35 Total: -58.15 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -5.86 Total: -106.38 kcal Atomic # 8 Polarization: -93.84 SS G_CDS: -4.21 Total: -98.05 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.71 Total: 43.67 kcal Atomic # 16 Polarization: 106.79 SS G_CDS: -0.29 Total: 106.50 kcal Total: -80.36 -1.53 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451454212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.038 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds