Wall clock time and date at job start Tue Mar 31 2020 12:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81406 * 109.47078 * 2 1 4 4 O 1.42097 * 110.54242 * 68.37978 * 3 2 1 5 5 O 1.42100 * 110.54304 * 291.62695 * 3 2 1 6 6 N 1.65596 * 104.44797 * 180.02562 * 3 2 1 7 7 C 1.46505 * 119.99941 * 65.00238 * 6 3 2 8 8 C 1.52997 * 109.47212 * 164.99768 * 7 6 3 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47859 * 179.97438 * 9 8 7 11 11 C 1.46848 * 110.99510 * 294.21467 * 10 9 8 12 12 C 1.53048 * 109.52064 * 174.15537 * 11 10 9 13 13 C 1.53118 * 109.27745 * 59.17773 * 12 11 10 14 14 C 1.52997 * 109.57543 * 182.41065 * 13 12 11 15 15 C 1.50703 * 109.46888 * 294.71393 * 14 13 12 16 16 H 1.07994 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46939 * 89.99786 * 19 17 15 21 21 H 1.48499 * 109.46693 * 209.99883 * 19 17 15 22 22 H 1.48498 * 109.47063 * 329.99943 * 19 17 15 23 23 C 1.53120 * 109.16026 * 302.34502 * 13 12 11 24 24 C 1.46844 * 111.00526 * 170.00090 * 10 9 8 25 25 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46523 * 299.99464 * 1 2 3 27 27 H 1.08996 * 109.47442 * 59.99434 * 1 2 3 28 28 H 1.08999 * 109.46875 * 240.00269 * 2 1 3 29 29 H 1.08991 * 109.47592 * 120.00092 * 2 1 3 30 30 H 0.96997 * 120.00145 * 244.99357 * 6 3 2 31 31 H 1.09002 * 109.47068 * 284.99828 * 7 6 3 32 32 H 1.09001 * 109.47372 * 44.99916 * 7 6 3 33 33 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 35 35 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 36 36 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 37 37 H 1.08996 * 109.46339 * 294.16557 * 11 10 9 38 38 H 1.08994 * 109.46869 * 54.14232 * 11 10 9 39 39 H 1.08998 * 109.49998 * 299.23732 * 12 11 10 40 40 H 1.08994 * 109.50211 * 179.11499 * 12 11 10 41 41 H 1.09002 * 109.52451 * 62.24612 * 13 12 11 42 42 H 1.09003 * 109.47495 * 54.71055 * 14 13 12 43 43 H 1.08998 * 109.47327 * 174.71638 * 14 13 12 44 44 H 0.96998 * 119.99432 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.50479 * 297.71302 * 23 13 12 46 46 H 1.08998 * 109.50625 * 177.59615 * 23 13 12 47 47 H 1.09003 * 109.46077 * 305.85847 * 24 10 9 48 48 H 1.08995 * 109.45945 * 65.83669 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9617 1.2837 -1.0783 9 6 6.6743 0.6587 -2.2792 10 7 8.1098 0.9630 -2.2098 11 6 8.3503 2.4033 -2.3648 12 6 9.8351 2.7006 -2.1426 13 6 10.6661 1.9130 -3.1593 14 6 12.1546 2.1584 -2.9049 15 6 12.4780 3.6058 -3.1724 16 1 11.6996 4.2829 -3.4916 17 6 13.7677 4.0655 -3.0097 18 7 14.7156 3.2410 -2.6206 19 14 14.1684 5.8598 -3.3407 20 1 13.9958 6.6440 -2.0915 21 1 15.5734 5.9751 -3.8075 22 1 13.2545 6.3864 -4.3860 23 6 10.3606 0.4201 -3.0092 24 6 8.8607 0.1889 -3.2063 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.2988 1.8765 0.7604 31 1 4.3227 -0.1131 -1.1373 32 1 4.0528 1.3772 -2.0724 33 1 6.1055 2.3641 -1.0920 34 1 6.3755 0.8739 -0.1570 35 1 6.5305 -0.4217 -2.2651 36 1 6.2607 1.0683 -3.2007 37 1 8.0645 2.7131 -3.3700 38 1 7.7568 2.9516 -1.6333 39 1 10.1185 2.4037 -1.1329 40 1 10.0161 3.7675 -2.2732 41 1 10.4106 2.2374 -4.1681 42 1 12.3903 1.9192 -1.8678 43 1 12.7456 1.5257 -3.5670 44 1 15.6228 3.5645 -2.5058 45 1 10.6524 0.0872 -2.0131 46 1 10.9171 -0.1424 -3.7589 47 1 8.6377 -0.8713 -3.0860 48 1 8.5725 0.5092 -4.2075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577509795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:05 Heat of formation + Delta-G solvation = -98.565825 kcal Electronic energy + Delta-G solvation = -24651.840778 eV Core-core repulsion = 21060.664963 eV Total energy + Delta-G solvation = -3591.175815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.94621 -37.51155 -36.60349 -36.30059 -34.55777 -33.68276 -32.51484 -30.84575 -30.27923 -27.72643 -25.06412 -24.59306 -23.35250 -22.87998 -21.42172 -20.55122 -19.62153 -18.91950 -18.04949 -17.05547 -16.70342 -16.23950 -15.86877 -15.78271 -15.11650 -14.66824 -14.55700 -14.42234 -14.05505 -13.75320 -13.56527 -13.21920 -13.05743 -12.90122 -12.81727 -12.49696 -12.42741 -12.38242 -12.11170 -11.99959 -11.79485 -11.68659 -11.35120 -11.20433 -11.10159 -10.93616 -10.77356 -10.64249 -10.54547 -10.24601 -9.93407 -9.86439 -9.51637 -9.03315 -8.86483 -8.31437 -8.12440 -5.96283 -3.97617 -0.17139 2.30509 3.33459 3.35086 3.39924 3.42909 3.72356 3.98123 4.05838 4.30126 4.48544 4.55920 4.63063 4.68409 4.85691 5.01126 5.08015 5.15074 5.22523 5.32803 5.36210 5.38943 5.41150 5.45695 5.54839 5.59773 5.74623 5.85537 5.88082 5.98068 6.04442 6.15555 6.25704 6.45153 6.55487 6.58005 6.67712 6.98839 7.11124 7.20704 7.32276 7.36905 7.71894 7.88391 8.04542 8.47725 9.08977 9.65789 11.14992 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002024 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.572955 B =13827.830767 C =14544.288312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.612 3.388 4 O -0.959 6.959 5 O -0.955 6.955 6 N -1.119 6.119 7 C 0.114 3.886 8 C -0.125 4.125 9 C 0.056 3.944 10 N -0.537 5.537 11 C 0.052 3.948 12 C -0.100 4.100 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.112 4.112 24 C 0.060 3.940 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.420 0.580 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.259 0.741 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.798 -10.405 4.599 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.704 3.296 4 O -0.949 6.949 5 O -0.945 6.945 6 N -0.879 5.879 7 C -0.013 4.013 8 C -0.164 4.164 9 C -0.073 4.073 10 N -0.261 5.261 11 C -0.076 4.076 12 C -0.138 4.138 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.150 4.150 24 C -0.068 4.068 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.255 0.745 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -27.028 -9.815 4.922 29.173 hybrid contribution 0.504 0.533 -0.656 0.985 sum -26.523 -9.282 4.266 28.423 Atomic orbital electron populations 1.21510 0.90446 1.05143 1.03565 1.30503 1.07345 1.26629 1.11710 1.04974 0.73171 0.77169 0.74331 1.93614 1.83170 1.72964 1.45136 1.93614 1.83368 1.71889 1.45597 1.55556 1.25899 1.78159 1.28304 1.21331 0.94557 0.97253 0.88120 1.21782 0.91999 1.02456 1.00152 1.21988 0.88696 1.00327 0.96313 1.61927 1.06381 1.07404 1.50435 1.22280 0.98992 0.87215 0.99065 1.21546 0.91185 1.00931 1.00090 1.21240 0.99043 0.92128 0.97657 1.19117 0.88403 0.96414 0.96982 1.21255 0.93891 0.95103 1.44973 0.92728 1.25027 0.96616 0.97395 0.95520 1.69970 1.01440 1.34639 1.47519 0.86647 0.77516 0.85659 0.78481 1.20723 1.21334 1.19980 1.21692 0.92929 0.98446 1.01914 1.22097 0.95364 0.96873 0.92420 0.89966 0.90899 0.90862 0.85052 0.84868 0.74548 0.91789 0.90207 0.90628 0.90121 0.90874 0.94876 0.95435 0.91355 0.91884 0.90941 0.93091 0.96526 0.96779 0.93121 0.91610 0.92159 0.91682 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.92 37.16 0.37 -0.26 16 2 C -0.63 -2.59 6.79 37.16 0.25 -2.34 16 3 S 2.61 19.77 5.46 -107.50 -0.59 19.18 16 4 O -0.96 -10.47 18.08 -57.54 -1.04 -11.51 16 5 O -0.95 -10.72 17.49 -57.54 -1.01 -11.73 16 6 N -1.12 -7.33 5.89 -10.61 -0.06 -7.39 16 7 C 0.11 0.74 6.13 -4.04 -0.02 0.71 16 8 C -0.12 -1.04 5.28 -26.74 -0.14 -1.19 16 9 C 0.06 0.55 4.96 -3.83 -0.02 0.53 16 10 N -0.54 -7.19 4.66 -234.67 -1.09 -8.28 16 11 C 0.05 0.77 5.29 -3.83 -0.02 0.75 16 12 C -0.10 -1.84 5.15 -26.65 -0.14 -1.98 16 13 C -0.08 -1.65 2.20 -90.50 -0.20 -1.85 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 15 C -0.51 -14.31 8.45 -34.44 -0.29 -14.60 16 16 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 17 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.11 -1.89 5.38 -26.65 -0.14 -2.04 16 24 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.42 2.42 8.62 -34.47 -0.30 2.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 33 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.62 7.99 -51.93 -0.41 0.20 16 36 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.91 6.21 -51.93 -0.32 0.59 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.43 7.05 -51.93 -0.37 1.07 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -35.19 388.30 -11.64 -46.82 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -8.82 Total: -4.06 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.60 Total: -19.38 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.42 Total: -41.87 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -2.05 Total: -23.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -0.59 Total: 19.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.19 -11.64 -46.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577509795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.741 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds