Wall clock time and date at job start Tue Mar 31 2020 12:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99937 * 2 1 4 4 C 1.50699 * 109.47117 * 66.04484 * 3 2 1 5 5 H 1.07997 * 120.00323 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00227 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99827 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00499 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47005 * 90.00049 * 8 6 4 10 10 H 1.48501 * 109.47598 * 210.00590 * 8 6 4 11 11 H 1.48503 * 109.47043 * 330.00694 * 8 6 4 12 12 C 1.46901 * 110.99760 * 236.04650 * 2 1 3 13 13 C 1.53004 * 109.46609 * 199.50691 * 12 2 1 14 14 H 1.08994 * 109.47487 * 298.47995 * 13 12 2 15 15 O 1.42901 * 109.47269 * 58.48159 * 13 12 2 16 16 C 1.53001 * 109.46886 * 178.47771 * 13 12 2 17 17 N 1.46906 * 109.47229 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99964 * 180.02562 * 17 16 13 19 19 C 1.53003 * 109.46948 * 176.90263 * 18 17 16 20 20 S 1.81391 * 112.85006 * 285.17224 * 19 18 17 21 21 C 1.81395 * 103.00124 * 295.10513 * 20 19 18 22 22 O 1.42101 * 109.46933 * 178.71845 * 20 19 18 23 23 C 1.53781 * 113.61107 * 153.97281 * 19 18 17 24 24 C 1.53951 * 87.01952 * 220.04930 * 23 19 18 25 25 C 1.53775 * 87.11116 * 25.36497 * 24 23 19 26 26 H 1.08998 * 109.46897 * 178.03166 * 1 2 3 27 27 H 1.09005 * 109.47273 * 298.03322 * 1 2 3 28 28 H 1.09000 * 109.47118 * 58.03492 * 1 2 3 29 29 H 1.08997 * 109.47258 * 186.04532 * 3 2 1 30 30 H 1.09006 * 109.47376 * 306.04725 * 3 2 1 31 31 H 0.97001 * 120.00003 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47583 * 319.50379 * 12 2 1 33 33 H 1.09000 * 109.47084 * 79.51082 * 12 2 1 34 34 H 0.96697 * 113.99907 * 59.99901 * 15 13 12 35 35 H 1.08994 * 109.47241 * 300.00375 * 16 13 12 36 36 H 1.09003 * 109.47251 * 60.00432 * 16 13 12 37 37 H 1.00900 * 110.99520 * 56.05298 * 17 16 13 38 38 H 1.09004 * 109.47532 * 296.90344 * 18 17 16 39 39 H 1.09002 * 109.47286 * 56.90741 * 18 17 16 40 40 H 1.09005 * 109.47302 * 65.13023 * 21 20 19 41 41 H 1.09002 * 109.47370 * 185.12663 * 21 20 19 42 42 H 1.08997 * 109.47655 * 305.13372 * 21 20 19 43 43 H 1.08991 * 113.62149 * 334.57147 * 23 19 18 44 44 H 1.09002 * 113.60933 * 105.47622 * 23 19 18 45 45 H 1.09008 * 113.54106 * 270.81427 * 24 23 19 46 46 H 1.08999 * 113.74209 * 139.94915 * 24 23 19 47 47 H 1.08999 * 113.61912 * 220.08794 * 25 24 23 48 48 H 1.09003 * 113.69006 * 89.19843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5838 4.1865 3.1386 9 1 2.6607 3.9494 4.1333 10 1 1.4319 5.6462 2.9119 11 1 0.3059 3.6295 3.6505 12 6 1.9954 -0.7660 -1.1376 13 6 3.4476 -1.1593 -0.8593 14 1 4.0522 -0.2596 -0.7450 15 8 3.5103 -1.9310 0.3418 16 6 3.9839 -1.9894 -2.0273 17 7 5.3784 -2.3665 -1.7604 18 6 5.9280 -3.1659 -2.8635 19 6 7.4008 -3.4734 -2.5860 20 16 8.4814 -2.0405 -2.8494 21 6 8.3275 -1.7353 -4.6309 22 8 9.8228 -2.3963 -2.5441 23 6 7.9016 -4.7566 -3.2698 24 6 8.6846 -5.0446 -1.9760 25 6 7.6391 -4.1863 -1.2445 26 1 -0.3633 -1.0270 -0.0353 27 1 -0.3634 0.4830 0.9071 28 1 -0.3633 0.5440 -0.8718 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8309 31 1 2.9873 4.9177 0.7774 32 1 1.3961 -1.6654 -1.2786 33 1 1.9509 -0.1547 -2.0390 34 1 2.9941 -2.7481 0.3117 35 1 3.3793 -2.8890 -2.1415 36 1 3.9362 -1.4008 -2.9435 37 1 5.4584 -2.8578 -0.8827 38 1 5.3716 -4.0994 -2.9482 39 1 5.8429 -2.6064 -3.7951 40 1 7.3049 -1.4362 -4.8613 41 1 9.0133 -0.9404 -4.9240 42 1 8.5716 -2.6459 -5.1780 43 1 7.1120 -5.4800 -3.4726 44 1 8.5386 -4.5704 -4.1345 45 1 9.6859 -4.6140 -1.9681 46 1 8.6727 -6.0936 -1.6801 47 1 8.0645 -3.5405 -0.4763 48 1 6.7771 -4.7524 -0.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578436508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:55 Heat of formation + Delta-G solvation = -57.463733 kcal Electronic energy + Delta-G solvation = -25329.328925 eV Core-core repulsion = 21739.935431 eV Total energy + Delta-G solvation = -3589.393494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.45120 -38.08343 -36.04730 -35.64807 -34.52023 -32.44326 -30.31936 -29.27121 -27.81056 -27.18234 -26.02960 -25.03464 -23.37401 -22.42030 -21.44103 -20.31883 -20.01074 -17.31437 -16.87071 -16.43589 -16.12953 -15.81964 -15.45295 -15.07225 -14.84970 -14.71512 -14.41864 -14.30455 -13.97403 -13.72250 -13.35731 -13.26501 -12.94848 -12.66570 -12.63529 -12.50354 -12.23808 -12.02609 -11.91241 -11.73382 -11.47443 -11.36646 -11.12479 -10.91058 -10.74616 -10.67854 -10.59691 -10.56823 -10.33909 -10.04615 -9.72378 -9.57708 -9.09707 -8.55177 -8.36955 -8.21098 -7.17737 -5.97318 -3.97425 1.39368 2.46652 3.37001 3.42771 3.45969 3.61136 3.76638 4.26850 4.32262 4.48049 4.51657 4.61427 4.79241 4.89156 4.95196 5.05562 5.12395 5.21390 5.31251 5.33194 5.35523 5.37684 5.42617 5.46414 5.58911 5.60693 5.68958 5.72486 5.76754 5.81268 5.87404 6.05750 6.07601 6.09880 6.35372 6.55105 6.72952 6.89178 7.31546 7.35200 7.35482 7.84592 8.09131 8.15137 8.24943 8.60310 9.09555 9.66278 11.13762 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002728 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.000823 B =10261.290556 C =10997.494686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.025 3.975 13 C 0.116 3.884 14 H 0.113 0.887 15 O -0.539 6.539 16 C 0.029 3.971 17 N -0.680 5.680 18 C 0.100 3.900 19 C -0.400 4.400 20 S 1.291 4.709 21 C -0.493 4.493 22 O -0.852 6.852 23 C -0.117 4.117 24 C -0.155 4.155 25 C -0.094 4.094 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.009 0.991 29 H 0.034 0.966 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.358 0.642 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.352 0.648 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 -16.556 -10.700 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.131 0.869 15 O -0.342 6.342 16 C -0.101 4.101 17 N -0.313 5.313 18 C -0.030 4.030 19 C -0.497 4.497 20 S 1.487 4.513 21 C -0.650 4.650 22 O -0.848 6.848 23 C -0.156 4.156 24 C -0.193 4.193 25 C -0.132 4.132 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.203 0.797 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.172 0.828 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.650 -15.022 -9.689 19.444 hybrid contribution -0.805 -2.102 -1.469 2.687 sum 6.845 -17.124 -11.158 21.554 Atomic orbital electron populations 1.22198 0.88997 0.98704 1.00941 1.62035 1.06366 1.17946 1.39120 1.19780 0.95634 0.81349 0.96450 1.21145 1.34574 0.96794 1.01707 0.91990 1.24969 0.95384 0.97377 0.96880 1.69952 1.38541 1.11443 1.33975 0.86520 0.78830 0.78332 0.83835 1.20583 1.21435 1.19994 1.22678 0.96028 0.98010 0.93779 1.21991 0.95232 0.94349 0.82863 0.86892 1.86709 1.72691 1.37338 1.37416 1.22695 0.88213 0.98759 1.00456 1.60283 1.18754 1.47033 1.05250 1.21459 0.90215 0.96046 0.95281 1.29157 1.06923 1.10184 1.03458 1.71413 0.89062 1.01527 0.89269 1.27684 1.08653 1.06915 1.21752 1.93017 1.32791 1.81684 1.77270 1.22914 0.99602 0.96013 0.97029 1.23117 0.99596 1.00700 0.95865 1.22428 0.99176 0.97661 0.93931 0.94027 0.90844 0.97199 0.94826 0.99434 0.92994 0.92509 0.94911 0.79730 0.95461 0.90098 0.82815 0.94910 0.90581 0.86718 0.87809 0.90305 0.89803 0.92210 0.88491 0.91268 0.90477 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.31 60.07 0.56 1.32 16 2 N -0.53 -10.94 4.52 -244.37 -1.11 -12.05 16 3 C 0.19 4.89 4.55 -4.98 -0.02 4.87 16 4 C -0.50 -14.06 8.54 -34.44 -0.29 -14.35 16 5 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.02 0.40 4.67 -3.82 -0.02 0.38 16 13 C 0.12 1.65 3.28 -26.73 -0.09 1.57 16 14 H 0.11 1.98 6.82 -51.93 -0.35 1.62 16 15 O -0.54 -8.03 12.51 -35.23 -0.44 -8.47 16 16 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 17 N -0.68 -6.35 6.45 -113.78 -0.73 -7.08 16 18 C 0.10 0.77 5.16 -3.82 -0.02 0.75 16 19 C -0.40 -3.35 0.91 -89.81 -0.08 -3.43 16 20 S 1.29 12.06 13.21 -107.50 -1.42 10.64 16 21 C -0.49 -3.77 10.37 101.05 1.05 -2.72 16 22 O -0.85 -12.42 16.23 -35.23 -0.57 -12.99 16 23 C -0.12 -1.00 7.20 -25.83 -0.19 -1.18 16 24 C -0.16 -1.49 7.66 -25.83 -0.20 -1.69 16 25 C -0.09 -0.83 6.28 -25.92 -0.16 -1.00 16 26 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.07 1.49 6.91 -51.93 -0.36 1.13 16 28 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 29 H 0.03 0.90 6.64 -51.93 -0.34 0.56 16 30 H -0.01 -0.33 8.11 -51.93 -0.42 -0.75 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 0.76 7.80 -51.93 -0.41 0.36 16 33 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.36 3.97 9.04 45.56 0.41 4.39 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 3.39 7.15 -39.29 -0.28 3.11 16 38 H 0.03 0.25 7.87 -51.93 -0.41 -0.16 16 39 H 0.08 0.50 7.00 -51.93 -0.36 0.14 16 40 H 0.11 0.66 7.34 -51.92 -0.38 0.28 16 41 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 43 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 44 H 0.06 0.53 7.30 -51.93 -0.38 0.15 16 45 H 0.10 1.16 6.66 -51.92 -0.35 0.82 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -34.07 387.88 -10.00 -44.07 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.71 Total: 2.87 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 0.42 Total: -13.78 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.10 Total: -44.81 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.01 Total: -21.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 12.06 SS G_CDS: -1.42 Total: 10.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.07 -10.00 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.393 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds