Wall clock time and date at job start Tue Mar 31 2020 12:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99937 * 2 1 4 4 C 1.50699 * 109.47117 * 66.04484 * 3 2 1 5 5 H 1.07997 * 120.00323 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00227 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99827 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00499 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47005 * 90.00049 * 8 6 4 10 10 H 1.48501 * 109.47598 * 210.00590 * 8 6 4 11 11 H 1.48503 * 109.47043 * 330.00694 * 8 6 4 12 12 C 1.46901 * 110.99760 * 236.04650 * 2 1 3 13 13 C 1.53004 * 109.46609 * 199.50691 * 12 2 1 14 14 H 1.08994 * 109.47487 * 298.47995 * 13 12 2 15 15 O 1.42901 * 109.47269 * 58.48159 * 13 12 2 16 16 C 1.53001 * 109.46886 * 178.47771 * 13 12 2 17 17 N 1.46906 * 109.47229 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99964 * 180.02562 * 17 16 13 19 19 C 1.53003 * 109.46948 * 176.90263 * 18 17 16 20 20 S 1.81391 * 112.85006 * 285.17224 * 19 18 17 21 21 C 1.81395 * 103.00124 * 295.10513 * 20 19 18 22 22 O 1.42101 * 109.46933 * 178.71845 * 20 19 18 23 23 C 1.53781 * 113.61107 * 153.97281 * 19 18 17 24 24 C 1.53951 * 87.01952 * 220.04930 * 23 19 18 25 25 C 1.53775 * 87.11116 * 25.36497 * 24 23 19 26 26 H 1.08998 * 109.46897 * 178.03166 * 1 2 3 27 27 H 1.09005 * 109.47273 * 298.03322 * 1 2 3 28 28 H 1.09000 * 109.47118 * 58.03492 * 1 2 3 29 29 H 1.08997 * 109.47258 * 186.04532 * 3 2 1 30 30 H 1.09006 * 109.47376 * 306.04725 * 3 2 1 31 31 H 0.97001 * 120.00003 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47583 * 319.50379 * 12 2 1 33 33 H 1.09000 * 109.47084 * 79.51082 * 12 2 1 34 34 H 0.96697 * 113.99907 * 59.99901 * 15 13 12 35 35 H 1.08994 * 109.47241 * 300.00375 * 16 13 12 36 36 H 1.09003 * 109.47251 * 60.00432 * 16 13 12 37 37 H 1.00900 * 110.99520 * 56.05298 * 17 16 13 38 38 H 1.09004 * 109.47532 * 296.90344 * 18 17 16 39 39 H 1.09002 * 109.47286 * 56.90741 * 18 17 16 40 40 H 1.09005 * 109.47302 * 65.13023 * 21 20 19 41 41 H 1.09002 * 109.47370 * 185.12663 * 21 20 19 42 42 H 1.08997 * 109.47655 * 305.13372 * 21 20 19 43 43 H 1.08991 * 113.62149 * 334.57147 * 23 19 18 44 44 H 1.09002 * 113.60933 * 105.47622 * 23 19 18 45 45 H 1.09008 * 113.54106 * 270.81427 * 24 23 19 46 46 H 1.08999 * 113.74209 * 139.94915 * 24 23 19 47 47 H 1.08999 * 113.61912 * 220.08794 * 25 24 23 48 48 H 1.09003 * 113.69006 * 89.19843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5838 4.1865 3.1386 9 1 2.6607 3.9494 4.1333 10 1 1.4319 5.6462 2.9119 11 1 0.3059 3.6295 3.6505 12 6 1.9954 -0.7660 -1.1376 13 6 3.4476 -1.1593 -0.8593 14 1 4.0522 -0.2596 -0.7450 15 8 3.5103 -1.9310 0.3418 16 6 3.9839 -1.9894 -2.0273 17 7 5.3784 -2.3665 -1.7604 18 6 5.9280 -3.1659 -2.8635 19 6 7.4008 -3.4734 -2.5860 20 16 8.4814 -2.0405 -2.8494 21 6 8.3275 -1.7353 -4.6309 22 8 9.8228 -2.3963 -2.5441 23 6 7.9016 -4.7566 -3.2698 24 6 8.6846 -5.0446 -1.9760 25 6 7.6391 -4.1863 -1.2445 26 1 -0.3633 -1.0270 -0.0353 27 1 -0.3634 0.4830 0.9071 28 1 -0.3633 0.5440 -0.8718 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8309 31 1 2.9873 4.9177 0.7774 32 1 1.3961 -1.6654 -1.2786 33 1 1.9509 -0.1547 -2.0390 34 1 2.9941 -2.7481 0.3117 35 1 3.3793 -2.8890 -2.1415 36 1 3.9362 -1.4008 -2.9435 37 1 5.4584 -2.8578 -0.8827 38 1 5.3716 -4.0994 -2.9482 39 1 5.8429 -2.6064 -3.7951 40 1 7.3049 -1.4362 -4.8613 41 1 9.0133 -0.9404 -4.9240 42 1 8.5716 -2.6459 -5.1780 43 1 7.1120 -5.4800 -3.4726 44 1 8.5386 -4.5704 -4.1345 45 1 9.6859 -4.6140 -1.9681 46 1 8.6727 -6.0936 -1.6801 47 1 8.0645 -3.5405 -0.4763 48 1 6.7771 -4.7524 -0.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578436508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:54 Heat of formation + Delta-G solvation = -86.125867 kcal Electronic energy + Delta-G solvation = -25330.571808 eV Core-core repulsion = 21739.935431 eV Total energy + Delta-G solvation = -3590.636378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18741 -39.28030 -37.27508 -36.75516 -35.44222 -34.51858 -31.37640 -30.00114 -29.31630 -28.56360 -26.78605 -26.29350 -24.93823 -23.23111 -22.57456 -21.56262 -21.04069 -18.53049 -18.10269 -17.62462 -17.20160 -16.87890 -16.48023 -16.37062 -15.88070 -15.81909 -15.62218 -15.44019 -15.03769 -14.81980 -14.69947 -14.24781 -13.95414 -13.77481 -13.65845 -13.35051 -13.33364 -13.12664 -13.02857 -12.86628 -12.75440 -12.52736 -12.47470 -12.39394 -12.25959 -12.21182 -12.02524 -11.48665 -11.37109 -11.30992 -11.23308 -10.82470 -10.57026 -10.52394 -9.25842 -8.96003 -8.84127 -8.12969 -6.21228 0.66065 1.44857 1.46957 1.56781 1.77015 2.46176 2.85462 2.97125 3.19756 3.40843 3.55370 3.70970 3.79901 3.89175 3.93015 4.18123 4.25657 4.33054 4.43560 4.47212 4.50134 4.59285 4.62413 4.65994 4.70482 4.71185 4.75013 4.86260 4.88506 4.89300 4.96090 4.99928 5.13048 5.16340 5.20181 5.25008 5.31735 5.41264 5.43205 5.72961 6.15024 6.20193 6.44660 6.61377 6.76592 6.94810 7.20708 7.47688 8.97869 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002728 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.000823 B =10261.290556 C =10997.494686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.002 3.998 7 N -0.932 5.932 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.122 3.878 14 H 0.070 0.930 15 O -0.559 6.559 16 C 0.043 3.957 17 N -0.691 5.691 18 C 0.105 3.895 19 C -0.387 4.387 20 S 1.288 4.712 21 C -0.484 4.484 22 O -0.913 6.913 23 C -0.111 4.111 24 C -0.163 4.163 25 C -0.094 4.094 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.007 0.993 29 H 0.010 0.990 30 H -0.041 1.041 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.376 0.624 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.351 0.649 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -18.222 -11.312 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.105 4.105 13 C 0.062 3.938 14 H 0.088 0.912 15 O -0.364 6.364 16 C -0.087 4.087 17 N -0.324 5.324 18 C -0.025 4.025 19 C -0.486 4.486 20 S 1.488 4.512 21 C -0.643 4.643 22 O -0.908 6.908 23 C -0.150 4.150 24 C -0.201 4.201 25 C -0.132 4.132 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.028 0.972 30 H -0.024 1.024 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.224 0.776 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.170 0.830 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.838 -16.712 -10.296 20.478 hybrid contribution -0.285 -1.656 -1.327 2.141 sum 5.553 -18.367 -11.623 22.434 Atomic orbital electron populations 1.22208 0.87846 1.00916 0.99687 1.61929 1.07538 1.15187 1.41939 1.19379 0.94058 0.83814 0.94371 1.21484 1.34488 0.97373 1.02596 0.92388 1.25841 0.95219 0.98135 1.00376 1.70070 1.39473 1.11832 1.35930 0.85471 0.78849 0.77313 0.79504 1.20109 1.20791 1.19025 1.22834 0.97441 0.98440 0.91817 1.21766 0.93717 0.93844 0.84439 0.91169 1.86665 1.73315 1.38424 1.38019 1.22472 0.88749 0.99027 0.98409 1.60228 1.18495 1.47846 1.05802 1.21497 0.89087 0.96767 0.95162 1.28941 1.07107 1.09381 1.03193 1.70715 0.87723 1.02068 0.90679 1.27594 1.10371 1.07035 1.19321 1.92950 1.35404 1.83103 1.79386 1.22933 0.99697 0.96244 0.96079 1.23078 0.98439 1.01255 0.97309 1.22470 0.99398 0.97534 0.93829 0.89999 0.93081 0.97472 0.97224 1.02372 0.92798 0.88864 0.95213 0.77627 0.92954 0.89268 0.82970 0.93371 0.88957 0.84155 0.87648 0.90325 0.87759 0.92779 0.91533 0.90150 0.91838 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.31 127.69 1.19 2.70 16 2 N -0.54 -22.08 4.52 -927.04 -4.19 -26.27 16 3 C 0.21 10.96 4.55 85.56 0.39 11.35 16 4 C -0.52 -29.60 8.54 25.60 0.22 -29.38 16 5 H 0.06 3.27 7.10 -2.91 -0.02 3.25 16 6 C 0.00 0.12 5.46 84.65 0.46 0.59 16 7 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 8 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.02 0.71 4.67 86.30 0.40 1.11 16 13 C 0.12 3.36 3.28 30.60 0.10 3.46 16 14 H 0.07 2.54 6.82 -2.39 -0.02 2.52 16 15 O -0.56 -15.79 12.51 -148.98 -1.86 -17.66 16 16 C 0.04 0.75 5.39 86.30 0.47 1.21 16 17 N -0.69 -11.26 6.45 -513.87 -3.32 -14.57 16 18 C 0.10 1.26 5.16 86.31 0.44 1.70 16 19 C -0.39 -5.87 0.91 -10.27 -0.01 -5.88 16 20 S 1.29 24.11 13.21 -56.49 -0.75 23.36 16 21 C -0.48 -6.69 10.37 113.37 1.18 -5.51 16 22 O -0.91 -28.10 16.23 -148.98 -2.42 -30.52 16 23 C -0.11 -1.69 7.20 31.18 0.22 -1.47 16 24 C -0.16 -3.09 7.66 31.18 0.24 -2.85 16 25 C -0.09 -1.59 6.28 31.12 0.20 -1.39 16 26 H 0.08 2.29 7.93 -2.39 -0.02 2.27 16 27 H 0.05 2.05 6.91 -2.38 -0.02 2.03 16 28 H 0.01 0.25 8.13 -2.39 -0.02 0.23 16 29 H 0.01 0.55 6.64 -2.39 -0.02 0.53 16 30 H -0.04 -2.34 8.11 -2.38 -0.02 -2.36 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.09 2.12 7.80 -2.39 -0.02 2.11 16 33 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 34 H 0.38 7.27 9.04 -74.06 -0.67 6.60 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.35 6.00 7.15 -89.69 -0.64 5.36 16 38 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 39 H 0.09 0.84 7.00 -2.39 -0.02 0.83 16 40 H 0.14 1.21 7.34 -2.39 -0.02 1.19 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.12 7.35 -2.39 -0.02 1.11 16 43 H 0.10 1.20 7.91 -2.39 -0.02 1.18 16 44 H 0.05 0.90 7.30 -2.39 -0.02 0.88 16 45 H 0.07 1.69 6.66 -2.38 -0.02 1.68 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 48 H 0.10 1.39 7.99 -2.39 -0.02 1.38 16 Total: -1.00 -76.52 387.88 -5.09 -81.61 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.36 Total: 17.37 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.50 Total: -24.37 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -7.22 Total: -96.41 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -4.28 Total: -48.17 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 24.11 SS G_CDS: -0.75 Total: 23.36 kcal Total: -76.52 -5.09 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.513 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds