Wall clock time and date at job start Tue Mar 31 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00240 * 2 1 4 4 C 1.50708 * 109.46938 * 293.95193 * 3 2 1 5 5 H 1.08000 * 119.99710 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99810 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00374 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99821 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47465 * 119.99722 * 8 6 4 11 11 H 1.48507 * 109.46813 * 240.00090 * 8 6 4 12 12 C 1.46902 * 110.99979 * 123.95089 * 2 1 3 13 13 C 1.53002 * 109.47065 * 164.06925 * 12 2 1 14 14 H 1.09000 * 109.47434 * 57.82283 * 13 12 2 15 15 O 1.42902 * 109.46914 * 297.81954 * 13 12 2 16 16 C 1.53001 * 109.46829 * 177.82549 * 13 12 2 17 17 N 1.46908 * 109.46817 * 184.99728 * 16 13 12 18 18 C 1.46897 * 110.99686 * 179.97438 * 17 16 13 19 19 C 1.53005 * 109.47024 * 179.08659 * 18 17 16 20 20 S 1.81404 * 112.90400 * 293.53319 * 19 18 17 21 21 C 1.81407 * 102.99901 * 305.62721 * 20 19 18 22 22 O 1.42095 * 109.47343 * 62.01336 * 20 19 18 23 23 C 1.53782 * 113.61795 * 64.77762 * 19 18 17 24 24 C 1.53780 * 87.17118 * 139.94284 * 23 19 18 25 25 C 1.53771 * 113.61739 * 162.28030 * 19 18 17 26 26 H 1.09008 * 109.46638 * 301.30263 * 1 2 3 27 27 H 1.08998 * 109.47088 * 61.30271 * 1 2 3 28 28 H 1.08993 * 109.47324 * 181.30531 * 1 2 3 29 29 H 1.08997 * 109.47524 * 53.95029 * 3 2 1 30 30 H 1.09001 * 109.47404 * 173.95538 * 3 2 1 31 31 H 0.96994 * 120.00115 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47068 * 44.06974 * 12 2 1 33 33 H 1.09001 * 109.46928 * 284.06579 * 12 2 1 34 34 H 0.96696 * 114.00603 * 300.00385 * 15 13 12 35 35 H 1.09004 * 109.47433 * 65.00044 * 16 13 12 36 36 H 1.08995 * 109.46991 * 304.99456 * 16 13 12 37 37 H 1.00900 * 110.99871 * 56.04317 * 17 16 13 38 38 H 1.09003 * 109.47434 * 59.08524 * 18 17 16 39 39 H 1.08998 * 109.47314 * 299.07876 * 18 17 16 40 40 H 1.09003 * 109.46679 * 65.74652 * 21 20 19 41 41 H 1.08994 * 109.47010 * 185.74457 * 21 20 19 42 42 H 1.08998 * 109.46820 * 305.74561 * 21 20 19 43 43 H 1.08997 * 113.61989 * 254.53463 * 23 19 18 44 44 H 1.09001 * 113.60966 * 25.35509 * 23 19 18 45 45 H 1.08996 * 113.61332 * 89.16593 * 24 23 19 46 46 H 1.09004 * 113.61020 * 220.06542 * 24 23 19 47 47 H 1.09001 * 113.61784 * 334.56500 * 25 19 18 48 48 H 1.09002 * 113.61622 * 105.38439 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0278 3.3490 -1.5290 7 7 2.7130 4.0015 -0.6155 8 14 1.5828 4.1868 -3.1383 9 1 0.8147 3.2445 -3.9910 10 1 0.7563 5.3884 -2.8589 11 1 2.8244 4.5932 -3.8445 12 6 1.9954 -0.7659 1.1376 13 6 3.4732 -1.0827 0.8991 14 1 4.0259 -0.1537 0.7589 15 8 3.6036 -1.8955 -0.2690 16 6 4.0354 -1.8332 2.1080 17 7 5.4803 -2.0321 1.9323 18 6 6.0558 -2.7507 3.0769 19 6 7.5542 -2.9586 2.8475 20 16 7.9082 -4.0758 1.4628 21 6 6.9604 -5.5634 1.8862 22 8 7.3987 -3.5159 0.2603 23 6 8.3583 -1.6485 2.8029 24 6 9.4484 -2.3793 3.6044 25 6 8.3321 -3.3004 4.1292 26 1 -0.3633 0.5340 0.8782 27 1 -0.3633 0.4935 -0.9014 28 1 -0.3633 -1.0273 0.0234 29 1 1.5612 1.9274 0.8308 30 1 3.0798 1.3444 0.1082 31 1 2.9876 4.9176 -0.7775 32 1 1.4363 -1.6960 1.2393 33 1 1.8925 -0.1784 2.0500 34 1 3.1359 -2.7401 -0.2147 35 1 3.5433 -2.8019 2.1954 36 1 3.8561 -1.2517 3.0123 37 1 5.9511 -1.1520 1.7844 38 1 5.5665 -3.7191 3.1813 39 1 5.9049 -2.1675 3.9853 40 1 5.8949 -5.3347 1.8611 41 1 7.1799 -6.3513 1.1658 42 1 7.2368 -5.8980 2.8861 43 1 8.6720 -1.3626 1.7990 44 1 7.8896 -0.8298 3.3491 45 1 10.1799 -2.8918 2.9797 46 1 9.9079 -1.7640 4.3780 47 1 7.8571 -2.9338 5.0392 48 1 8.6235 -4.3486 4.1966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578436509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:57 Heat of formation + Delta-G solvation = -53.314032 kcal Electronic energy + Delta-G solvation = -25588.932092 eV Core-core repulsion = 21999.718542 eV Total energy + Delta-G solvation = -3589.213550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.35020 -37.96088 -35.81794 -35.45529 -34.53158 -32.42905 -30.29473 -29.11479 -27.74428 -27.16914 -25.95612 -24.98784 -23.36030 -22.35982 -21.47313 -20.24002 -19.94315 -17.07698 -16.71321 -16.46931 -16.04529 -15.63723 -15.33545 -14.94960 -14.83108 -14.57350 -14.44815 -14.17372 -13.83680 -13.79184 -13.36702 -13.19435 -12.88233 -12.68301 -12.59177 -12.48506 -12.00480 -11.91463 -11.89925 -11.71401 -11.34417 -11.29971 -11.10125 -10.89411 -10.65946 -10.61529 -10.57269 -10.56663 -10.29912 -9.89471 -9.70221 -9.39068 -9.05345 -8.39930 -8.36692 -8.17129 -7.14904 -5.97105 -3.97014 1.59551 2.56074 3.35956 3.42986 3.48949 3.66641 4.01862 4.23342 4.42575 4.48886 4.54414 4.62454 4.86567 4.98947 5.04347 5.08071 5.18319 5.25725 5.35165 5.37042 5.38680 5.42891 5.46946 5.55055 5.60760 5.66094 5.72356 5.74530 5.79483 5.83319 5.88714 5.99485 6.07440 6.13633 6.36655 6.57098 6.74983 6.97864 7.32921 7.34991 7.38757 7.86364 8.14168 8.24208 8.37135 8.61641 9.10343 9.66655 11.14271 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002842 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.603249 B = 9850.640572 C =10340.037465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.119 3.881 14 H 0.100 0.900 15 O -0.525 6.525 16 C 0.030 3.970 17 N -0.672 5.672 18 C 0.079 3.921 19 C -0.413 4.413 20 S 1.272 4.728 21 C -0.494 4.494 22 O -0.809 6.809 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.094 4.094 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.042 0.958 29 H -0.013 1.013 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.358 0.642 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.347 0.653 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.189 -19.826 14.057 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.103 4.103 13 C 0.059 3.941 14 H 0.118 0.882 15 O -0.327 6.327 16 C -0.100 4.100 17 N -0.304 5.304 18 C -0.051 4.051 19 C -0.509 4.509 20 S 1.466 4.534 21 C -0.651 4.651 22 O -0.804 6.804 23 C -0.141 4.141 24 C -0.181 4.181 25 C -0.133 4.133 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.005 0.995 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.202 0.798 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.166 0.834 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.238 -19.756 12.267 27.802 hybrid contribution -3.252 1.686 1.288 3.883 sum 11.986 -18.069 13.555 25.571 Atomic orbital electron populations 1.22194 0.88898 0.98860 1.00859 1.62026 1.06451 1.17819 1.39167 1.19779 0.95490 0.81457 0.96541 1.21198 1.34378 0.96771 1.01650 0.91821 1.24990 0.95354 0.97385 0.97016 1.69965 1.38728 1.11357 1.34091 0.86432 0.78159 0.79176 0.83613 1.19636 1.21215 1.20963 1.22683 0.96046 0.98080 0.93474 1.21843 0.94269 0.93975 0.84025 0.88227 1.86746 1.75570 1.32225 1.38169 1.22702 0.88967 1.00151 0.98150 1.60338 1.02911 1.27529 1.39584 1.21822 0.91910 0.98983 0.92406 1.29311 0.98934 1.09932 1.12677 1.70522 1.12990 0.87340 0.82592 1.27692 1.11972 1.17125 1.08301 1.93252 1.78859 1.74536 1.33742 1.22517 0.95861 0.94460 1.01272 1.22947 0.96335 0.98698 1.00108 1.22559 0.95755 1.00120 0.94837 0.97261 0.90749 0.93912 0.99507 0.95106 0.93087 0.92242 0.95466 0.79781 0.91405 0.94925 0.83413 0.91484 0.95280 0.89773 0.88030 0.87811 0.90753 0.89948 0.89160 0.90906 0.89980 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.33 60.06 0.56 1.40 16 2 N -0.53 -12.30 4.61 -244.37 -1.13 -13.43 16 3 C 0.19 5.31 4.57 -4.97 -0.02 5.28 16 4 C -0.50 -14.91 8.53 -34.44 -0.29 -15.21 16 5 H 0.06 1.89 7.10 -52.49 -0.37 1.52 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 8 Si 0.90 22.70 29.54 -169.99 -5.02 17.68 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 12 C 0.03 0.51 4.63 -3.82 -0.02 0.49 16 13 C 0.12 2.22 3.17 -26.73 -0.08 2.13 16 14 H 0.10 2.18 6.53 -51.93 -0.34 1.84 16 15 O -0.53 -10.69 13.19 -35.23 -0.46 -11.16 16 16 C 0.03 0.45 5.32 -3.82 -0.02 0.43 16 17 N -0.67 -9.76 5.82 -113.77 -0.66 -10.42 16 18 C 0.08 0.85 4.94 -3.82 -0.02 0.84 16 19 C -0.41 -3.44 0.93 -89.81 -0.08 -3.52 16 20 S 1.27 10.99 12.91 -107.50 -1.39 9.61 16 21 C -0.49 -3.70 10.07 101.05 1.02 -2.68 16 22 O -0.81 -13.33 17.59 -35.23 -0.62 -13.95 16 23 C -0.10 -0.87 6.53 -25.92 -0.17 -1.04 16 24 C -0.14 -0.74 7.83 -25.83 -0.20 -0.94 16 25 C -0.09 -0.48 7.25 -25.83 -0.19 -0.67 16 26 H 0.01 0.18 8.13 -51.92 -0.42 -0.24 16 27 H 0.07 1.63 6.89 -51.93 -0.36 1.28 16 28 H 0.04 0.75 7.97 -51.93 -0.41 0.33 16 29 H -0.01 -0.37 8.11 -51.93 -0.42 -0.79 16 30 H 0.03 0.91 6.37 -51.93 -0.33 0.58 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 32 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 33 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 34 H 0.36 5.90 9.05 45.56 0.41 6.31 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.35 5.38 8.07 -39.29 -0.32 5.07 16 38 H 0.07 0.70 6.74 -51.93 -0.35 0.35 16 39 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 40 H 0.08 0.84 7.33 -51.92 -0.38 0.46 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 48 H 0.08 0.20 8.10 -51.93 -0.42 -0.22 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -38.90 392.59 -10.14 -49.04 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.89 Total: 5.78 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 0.38 Total: -12.00 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -1.05 Total: -50.91 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.08 Total: -25.11 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 10.99 SS G_CDS: -1.39 Total: 9.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.90 -10.14 -49.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.278 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds