Wall clock time and date at job start Tue Mar 31 2020 12:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00240 * 2 1 4 4 C 1.50708 * 109.46938 * 293.95193 * 3 2 1 5 5 H 1.08000 * 119.99710 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99810 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00374 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99821 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47465 * 119.99722 * 8 6 4 11 11 H 1.48507 * 109.46813 * 240.00090 * 8 6 4 12 12 C 1.46902 * 110.99979 * 123.95089 * 2 1 3 13 13 C 1.53002 * 109.47065 * 164.06925 * 12 2 1 14 14 H 1.09000 * 109.47434 * 57.82283 * 13 12 2 15 15 O 1.42902 * 109.46914 * 297.81954 * 13 12 2 16 16 C 1.53001 * 109.46829 * 177.82549 * 13 12 2 17 17 N 1.46908 * 109.46817 * 184.99728 * 16 13 12 18 18 C 1.46897 * 110.99686 * 179.97438 * 17 16 13 19 19 C 1.53005 * 109.47024 * 179.08659 * 18 17 16 20 20 S 1.81404 * 112.90400 * 293.53319 * 19 18 17 21 21 C 1.81407 * 102.99901 * 305.62721 * 20 19 18 22 22 O 1.42095 * 109.47343 * 62.01336 * 20 19 18 23 23 C 1.53782 * 113.61795 * 64.77762 * 19 18 17 24 24 C 1.53780 * 87.17118 * 139.94284 * 23 19 18 25 25 C 1.53771 * 113.61739 * 162.28030 * 19 18 17 26 26 H 1.09008 * 109.46638 * 301.30263 * 1 2 3 27 27 H 1.08998 * 109.47088 * 61.30271 * 1 2 3 28 28 H 1.08993 * 109.47324 * 181.30531 * 1 2 3 29 29 H 1.08997 * 109.47524 * 53.95029 * 3 2 1 30 30 H 1.09001 * 109.47404 * 173.95538 * 3 2 1 31 31 H 0.96994 * 120.00115 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47068 * 44.06974 * 12 2 1 33 33 H 1.09001 * 109.46928 * 284.06579 * 12 2 1 34 34 H 0.96696 * 114.00603 * 300.00385 * 15 13 12 35 35 H 1.09004 * 109.47433 * 65.00044 * 16 13 12 36 36 H 1.08995 * 109.46991 * 304.99456 * 16 13 12 37 37 H 1.00900 * 110.99871 * 56.04317 * 17 16 13 38 38 H 1.09003 * 109.47434 * 59.08524 * 18 17 16 39 39 H 1.08998 * 109.47314 * 299.07876 * 18 17 16 40 40 H 1.09003 * 109.46679 * 65.74652 * 21 20 19 41 41 H 1.08994 * 109.47010 * 185.74457 * 21 20 19 42 42 H 1.08998 * 109.46820 * 305.74561 * 21 20 19 43 43 H 1.08997 * 113.61989 * 254.53463 * 23 19 18 44 44 H 1.09001 * 113.60966 * 25.35509 * 23 19 18 45 45 H 1.08996 * 113.61332 * 89.16593 * 24 23 19 46 46 H 1.09004 * 113.61020 * 220.06542 * 24 23 19 47 47 H 1.09001 * 113.61784 * 334.56500 * 25 19 18 48 48 H 1.09002 * 113.61622 * 105.38439 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0278 3.3490 -1.5290 7 7 2.7130 4.0015 -0.6155 8 14 1.5828 4.1868 -3.1383 9 1 0.8147 3.2445 -3.9910 10 1 0.7563 5.3884 -2.8589 11 1 2.8244 4.5932 -3.8445 12 6 1.9954 -0.7659 1.1376 13 6 3.4732 -1.0827 0.8991 14 1 4.0259 -0.1537 0.7589 15 8 3.6036 -1.8955 -0.2690 16 6 4.0354 -1.8332 2.1080 17 7 5.4803 -2.0321 1.9323 18 6 6.0558 -2.7507 3.0769 19 6 7.5542 -2.9586 2.8475 20 16 7.9082 -4.0758 1.4628 21 6 6.9604 -5.5634 1.8862 22 8 7.3987 -3.5159 0.2603 23 6 8.3583 -1.6485 2.8029 24 6 9.4484 -2.3793 3.6044 25 6 8.3321 -3.3004 4.1292 26 1 -0.3633 0.5340 0.8782 27 1 -0.3633 0.4935 -0.9014 28 1 -0.3633 -1.0273 0.0234 29 1 1.5612 1.9274 0.8308 30 1 3.0798 1.3444 0.1082 31 1 2.9876 4.9176 -0.7775 32 1 1.4363 -1.6960 1.2393 33 1 1.8925 -0.1784 2.0500 34 1 3.1359 -2.7401 -0.2147 35 1 3.5433 -2.8019 2.1954 36 1 3.8561 -1.2517 3.0123 37 1 5.9511 -1.1520 1.7844 38 1 5.5665 -3.7191 3.1813 39 1 5.9049 -2.1675 3.9853 40 1 5.8949 -5.3347 1.8611 41 1 7.1799 -6.3513 1.1658 42 1 7.2368 -5.8980 2.8861 43 1 8.6720 -1.3626 1.7990 44 1 7.8896 -0.8298 3.3491 45 1 10.1799 -2.8918 2.9797 46 1 9.9079 -1.7640 4.3780 47 1 7.8571 -2.9338 5.0392 48 1 8.6235 -4.3486 4.1966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578436509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:56 Heat of formation + Delta-G solvation = -87.346565 kcal Electronic energy + Delta-G solvation = -25590.407853 eV Core-core repulsion = 21999.718542 eV Total energy + Delta-G solvation = -3590.689311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10296 -39.42171 -37.38904 -36.52907 -35.79115 -34.66901 -31.60465 -29.93981 -29.44429 -28.61914 -26.69118 -26.30080 -25.10347 -23.23354 -22.98097 -21.75316 -20.83861 -18.68280 -17.97782 -17.72309 -17.10137 -16.97818 -16.57844 -16.45159 -16.09099 -15.88436 -15.75994 -15.34274 -15.07861 -14.98600 -14.59493 -14.48855 -14.07681 -13.93950 -13.77715 -13.31213 -13.23985 -13.17698 -13.04380 -12.94346 -12.74074 -12.65456 -12.60476 -12.50158 -12.38328 -12.25585 -11.84170 -11.62115 -11.38696 -11.32474 -11.16632 -10.75624 -10.66634 -10.66296 -9.45682 -9.03040 -9.01042 -8.26279 -6.36022 0.90182 1.34704 1.37159 1.50580 1.90115 2.35793 2.77656 3.05355 3.07986 3.34303 3.54358 3.64166 3.78594 3.82395 3.98602 4.01867 4.08882 4.24815 4.30403 4.40636 4.43010 4.46385 4.50209 4.53555 4.54712 4.59835 4.68533 4.69297 4.88644 4.92520 4.98016 5.01418 5.11810 5.12897 5.22187 5.22575 5.28025 5.33764 5.55445 5.58947 5.92985 6.00389 6.17371 6.27807 6.56865 6.79343 6.99725 7.33373 8.85482 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002842 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.603249 B = 9850.640572 C =10340.037465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.211 3.789 4 C -0.524 4.524 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.030 3.970 13 C 0.125 3.875 14 H 0.054 0.946 15 O -0.552 6.552 16 C 0.044 3.956 17 N -0.690 5.690 18 C 0.076 3.924 19 C -0.414 4.414 20 S 1.311 4.689 21 C -0.488 4.488 22 O -0.898 6.898 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.080 4.080 26 H 0.010 0.990 27 H 0.055 0.945 28 H 0.082 0.918 29 H -0.040 1.040 30 H -0.001 1.001 31 H 0.265 0.735 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.374 0.626 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.334 0.666 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -22.218 15.447 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.269 5.269 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.204 1.204 12 C -0.099 4.099 13 C 0.065 3.935 14 H 0.072 0.928 15 O -0.357 6.357 16 C -0.086 4.086 17 N -0.321 5.321 18 C -0.054 4.054 19 C -0.511 4.511 20 S 1.509 4.491 21 C -0.646 4.646 22 O -0.893 6.893 23 C -0.157 4.157 24 C -0.170 4.170 25 C -0.118 4.118 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.101 0.899 29 H -0.022 1.022 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.221 0.779 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.162 0.838 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.426 -22.176 13.662 30.272 hybrid contribution -3.316 2.358 0.953 4.179 sum 12.111 -19.819 14.615 27.442 Atomic orbital electron populations 1.22215 0.87190 1.01178 0.99995 1.61923 1.08126 1.15237 1.41653 1.19372 0.93489 0.83806 0.94893 1.21498 1.34805 0.97537 1.02390 0.92190 1.25963 0.94948 0.98054 1.00933 1.70090 1.39410 1.11885 1.36220 0.85296 0.78131 0.78219 0.78751 1.18832 1.19802 1.20425 1.22762 0.96423 0.98851 0.91863 1.21673 0.93858 0.92716 0.85257 0.92840 1.86694 1.76243 1.33400 1.39378 1.22508 0.89381 1.00574 0.96119 1.60381 1.02754 1.27069 1.41891 1.21976 0.93433 0.98827 0.91134 1.29321 0.97642 1.09949 1.14227 1.69375 1.12366 0.86842 0.80502 1.27633 1.09966 1.15968 1.11055 1.93126 1.80935 1.76766 1.38506 1.22589 0.97968 0.94610 1.00580 1.23012 0.96014 0.98191 0.99825 1.22611 0.94186 1.02377 0.92669 0.97135 0.92586 0.89903 1.02242 0.98267 0.92650 0.88441 0.95399 0.77875 0.89243 0.94146 0.84859 0.90459 0.94824 0.92048 0.87062 0.83779 0.93115 0.91269 0.86784 0.90088 0.89773 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.33 127.69 1.19 2.91 16 2 N -0.55 -25.70 4.61 -927.04 -4.28 -29.98 16 3 C 0.21 12.20 4.57 85.56 0.39 12.59 16 4 C -0.52 -32.16 8.53 25.60 0.22 -31.94 16 5 H 0.06 3.64 7.10 -2.91 -0.02 3.62 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 8 Si 0.97 47.22 29.54 68.60 2.03 49.25 16 9 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.03 1.13 4.63 86.30 0.40 1.53 16 13 C 0.13 4.83 3.17 30.60 0.10 4.93 16 14 H 0.05 2.55 6.53 -2.39 -0.02 2.54 16 15 O -0.55 -23.11 13.19 -148.98 -1.96 -25.08 16 16 C 0.04 1.30 5.32 86.30 0.46 1.76 16 17 N -0.69 -20.68 5.82 -513.86 -2.99 -23.67 16 18 C 0.08 1.57 4.94 86.31 0.43 2.00 16 19 C -0.41 -6.42 0.93 -10.27 -0.01 -6.43 16 20 S 1.31 21.69 12.91 -56.49 -0.73 20.96 16 21 C -0.49 -6.01 10.07 113.37 1.14 -4.87 16 22 O -0.90 -31.04 17.59 -148.98 -2.62 -33.66 16 23 C -0.12 -2.06 6.53 31.12 0.20 -1.86 16 24 C -0.13 -1.06 7.83 31.18 0.24 -0.82 16 25 C -0.08 -0.54 7.25 31.18 0.23 -0.31 16 26 H 0.01 0.41 8.13 -2.38 -0.02 0.39 16 27 H 0.06 2.46 6.89 -2.39 -0.02 2.44 16 28 H 0.08 2.69 7.97 -2.39 -0.02 2.67 16 29 H -0.04 -2.47 8.11 -2.39 -0.02 -2.49 16 30 H 0.00 -0.04 6.37 -2.39 -0.02 -0.06 16 31 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.10 2.94 7.88 -2.39 -0.02 2.92 16 33 H 0.03 1.06 8.05 -2.39 -0.02 1.04 16 34 H 0.37 12.25 9.05 -74.06 -0.67 11.58 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.33 11.27 8.07 -89.69 -0.72 10.54 16 38 H 0.08 1.44 6.74 -2.39 -0.02 1.42 16 39 H 0.03 0.67 8.05 -2.39 -0.02 0.65 16 40 H 0.06 1.11 7.33 -2.39 -0.02 1.09 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 44 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 45 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.08 0.62 8.03 -2.39 -0.02 0.60 16 48 H 0.11 -0.03 8.10 -2.39 -0.02 -0.05 16 Total: -1.00 -90.07 392.59 -5.28 -95.35 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.45 Total: 26.10 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.45 Total: -20.14 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -6.98 Total: -112.77 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -4.59 Total: -58.74 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 21.69 SS G_CDS: -0.73 Total: 20.96 kcal Total: -90.07 -5.28 -95.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.999 kcal (2) G-P(sol) polarization free energy of solvation -90.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds