Wall clock time and date at job start Tue Mar 31 2020 12:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00279 * 2 1 4 4 S 1.65601 * 119.99797 * 179.97438 * 2 1 3 5 5 O 1.42100 * 104.27822 * 333.92989 * 4 2 1 6 6 O 1.42103 * 104.27772 * 206.07654 * 4 2 1 7 7 C 1.81399 * 104.44938 * 90.00306 * 4 2 1 8 8 C 1.52999 * 109.46810 * 179.97438 * 7 4 2 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 4 10 10 N 1.46896 * 109.47501 * 180.02562 * 9 8 7 11 11 C 1.46845 * 110.99677 * 294.21046 * 10 9 8 12 12 C 1.53038 * 109.52162 * 174.15956 * 11 10 9 13 13 C 1.53120 * 109.27912 * 59.17918 * 12 11 10 14 14 C 1.53007 * 109.57278 * 182.41028 * 13 12 11 15 15 C 1.50699 * 109.46758 * 294.71226 * 14 13 12 16 16 H 1.07997 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99694 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00196 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46698 * 59.99715 * 19 17 15 21 21 H 1.48501 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46878 * 299.99966 * 19 17 15 23 23 C 1.53121 * 109.15964 * 302.34400 * 13 12 11 24 24 C 1.46847 * 111.00413 * 169.99808 * 10 9 8 25 25 H 1.08994 * 109.47510 * 240.00470 * 1 2 3 26 26 H 1.09001 * 109.47006 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46839 * 120.00144 * 1 2 3 28 28 H 1.08998 * 109.47096 * 269.99857 * 3 2 1 29 29 H 1.09006 * 109.47110 * 29.99539 * 3 2 1 30 30 H 1.09001 * 109.47725 * 149.99380 * 3 2 1 31 31 H 1.09000 * 109.47070 * 299.99993 * 7 4 2 32 32 H 1.09001 * 109.46593 * 59.99990 * 7 4 2 33 33 H 1.09000 * 109.47486 * 299.99969 * 8 7 4 34 34 H 1.09001 * 109.47362 * 60.00691 * 8 7 4 35 35 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 36 36 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 37 37 H 1.08997 * 109.46411 * 294.16980 * 11 10 9 38 38 H 1.09004 * 109.46690 * 54.14536 * 11 10 9 39 39 H 1.09002 * 109.50416 * 299.23326 * 12 11 10 40 40 H 1.08998 * 109.50408 * 179.11946 * 12 11 10 41 41 H 1.08994 * 109.52456 * 62.25290 * 13 12 11 42 42 H 1.09002 * 109.47257 * 54.71330 * 14 13 12 43 43 H 1.08999 * 109.46769 * 174.71588 * 14 13 12 44 44 H 0.96993 * 120.00554 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.50283 * 297.71284 * 23 13 12 46 46 H 1.08994 * 109.50340 * 177.59558 * 23 13 12 47 47 H 1.08997 * 109.45837 * 305.85531 * 24 10 9 48 48 H 1.09004 * 109.45866 * 65.83373 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.3969 -2.3559 0.6063 6 8 3.5394 -1.1190 0.6058 7 6 2.5194 -1.8269 -1.7558 8 6 3.2819 -3.1466 -1.8891 9 6 3.4735 -3.4776 -3.3706 10 7 4.2051 -4.7449 -3.4986 11 6 5.5744 -4.6163 -2.9841 12 6 6.2569 -5.9860 -2.9985 13 6 6.2787 -6.5249 -4.4316 14 6 6.9058 -7.9205 -4.4449 15 6 8.3544 -7.8241 -4.0409 16 1 8.7847 -6.8637 -3.7984 17 6 9.1305 -8.9622 -3.9808 18 7 8.6064 -10.1319 -4.2756 19 14 10.9260 -8.8429 -3.4793 20 1 11.0210 -8.2712 -2.1122 21 1 11.5346 -10.1974 -3.4924 22 1 11.6493 -7.9654 -4.4343 23 6 4.8440 -6.6035 -4.9608 24 6 4.2025 -5.2160 -4.8895 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5833 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 1.5452 -1.9197 -2.2359 32 1 3.0867 -1.0297 -2.2361 33 1 4.2561 -3.0534 -1.4091 34 1 2.7149 -3.9440 -1.4087 35 1 2.4994 -3.5706 -3.8509 36 1 4.0406 -2.6802 -3.8507 37 1 6.1351 -3.9246 -3.6127 38 1 5.5446 -4.2362 -1.9629 39 1 5.7046 -6.6746 -2.3591 40 1 7.2784 -5.8875 -2.6312 41 1 6.8639 -5.8566 -5.0632 42 1 6.3749 -8.5641 -3.7434 43 1 6.8356 -8.3407 -5.4482 44 1 9.1524 -10.9324 -4.2337 45 1 4.2694 -7.3018 -4.3523 46 1 4.8561 -6.9461 -5.9954 47 1 3.1761 -5.2713 -5.2522 48 1 4.7698 -4.5214 -5.5091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581545781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:18 Heat of formation + Delta-G solvation = -84.244392 kcal Electronic energy + Delta-G solvation = -25057.872335 eV Core-core repulsion = 21467.317545 eV Total energy + Delta-G solvation = -3590.554791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.92251 -37.45820 -36.65850 -36.16800 -35.57435 -33.38120 -31.88748 -30.38854 -28.55604 -28.29879 -26.00389 -25.09348 -23.59842 -22.88878 -21.43574 -20.52645 -19.23751 -18.90866 -17.96282 -16.96873 -16.76168 -16.21923 -15.71233 -15.52364 -14.92743 -14.82093 -14.53936 -14.38318 -13.99329 -13.58409 -13.50471 -13.17450 -13.17099 -12.94708 -12.71462 -12.58673 -12.35905 -12.34609 -12.01562 -11.99786 -11.89611 -11.87382 -11.62556 -11.21352 -11.00952 -10.88283 -10.78261 -10.63699 -10.52791 -10.23603 -9.93060 -9.52301 -9.49518 -9.02298 -8.85992 -8.29733 -8.14041 -5.94539 -3.96052 -0.12578 2.24672 3.36078 3.40604 3.42886 3.45429 3.76847 3.88643 4.22474 4.37961 4.49691 4.49933 4.75225 4.84872 4.89882 4.99761 5.08993 5.20682 5.31087 5.32073 5.32980 5.37394 5.40726 5.44385 5.48731 5.54765 5.69789 5.74729 5.83294 5.87816 5.99833 6.01304 6.14188 6.25173 6.45670 6.58749 6.68421 6.99873 7.11982 7.21871 7.30818 7.36341 7.73057 7.89981 8.06123 8.49148 9.10282 9.67229 11.16733 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.002284 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.403483 B =12254.520235 C =12890.736061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.012 6.012 3 C 0.081 3.919 4 S 2.610 3.390 5 O -0.950 6.950 6 O -0.951 6.951 7 C -0.623 4.623 8 C -0.112 4.112 9 C 0.065 3.935 10 N -0.538 5.538 11 C 0.049 3.951 12 C -0.101 4.101 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.112 4.112 24 C 0.060 3.940 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.260 0.740 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.047 23.822 4.462 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.850 5.850 3 C -0.064 4.064 4 S 2.703 3.297 5 O -0.940 6.940 6 O -0.942 6.942 7 C -0.754 4.754 8 C -0.151 4.151 9 C -0.064 4.064 10 N -0.263 5.263 11 C -0.078 4.078 12 C -0.138 4.138 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.150 4.150 24 C -0.067 4.067 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -17.993 22.847 5.507 29.599 hybrid contribution 1.276 0.890 -1.060 1.883 sum -16.716 23.738 4.447 29.372 Atomic orbital electron populations 1.21542 0.78188 1.03572 1.02236 1.57408 1.15300 1.21931 1.90408 1.21656 0.97753 0.85036 1.01967 1.05150 0.73913 0.72990 0.77655 1.93602 1.64547 1.62323 1.73533 1.93596 1.44092 1.82834 1.73651 1.30589 1.10275 1.07724 1.26767 1.21367 1.00678 0.93234 0.99845 1.21966 0.98886 0.91005 0.94545 1.61931 1.16111 1.27363 1.20936 1.22317 0.87449 0.99000 0.99034 1.21558 1.00100 0.93858 0.98326 1.21242 0.93477 1.00542 0.94788 1.19110 0.94927 0.89795 0.97022 1.21215 0.95592 0.93070 1.45434 0.92783 1.25023 0.98300 0.95551 0.95644 1.69953 1.36210 0.98113 1.49301 0.86707 0.85457 0.76983 0.79133 1.20263 1.21380 1.20384 1.21696 0.97549 0.94895 1.00871 1.22100 0.99856 0.97349 0.87415 0.91289 0.90248 0.92297 0.92772 0.90634 0.89642 0.85007 0.85161 0.90045 0.89212 0.90716 0.94861 0.95324 0.91313 0.91735 0.90811 0.93090 0.96485 0.96791 0.93049 0.91510 0.92105 0.91632 0.95391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.26 59.85 0.61 1.05 16 2 N -1.01 -6.67 3.52 -129.21 -0.45 -7.13 16 3 C 0.08 0.40 10.61 59.84 0.63 1.04 16 4 S 2.61 24.10 5.43 -107.50 -0.58 23.52 16 5 O -0.95 -11.83 17.10 -57.54 -0.98 -12.81 16 6 O -0.95 -11.85 16.57 -57.54 -0.95 -12.80 16 7 C -0.62 -4.32 6.18 37.16 0.23 -4.09 16 8 C -0.11 -1.13 5.15 -26.73 -0.14 -1.27 16 9 C 0.07 0.72 4.96 -3.82 -0.02 0.70 16 10 N -0.54 -7.71 4.66 -234.68 -1.09 -8.80 16 11 C 0.05 0.76 5.29 -3.83 -0.02 0.74 16 12 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 13 C -0.08 -1.68 2.20 -90.49 -0.20 -1.88 16 14 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 15 C -0.51 -14.46 8.45 -34.44 -0.29 -14.75 16 16 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 24 C 0.06 0.87 5.46 -3.84 -0.02 0.85 16 25 H 0.07 0.40 7.90 -51.93 -0.41 -0.01 16 26 H 0.08 0.22 7.79 -51.93 -0.40 -0.19 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 30 H 0.08 0.52 6.91 -51.93 -0.36 0.16 16 31 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.13 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.08 0.86 6.43 -51.93 -0.33 0.52 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.72 7.99 -51.93 -0.41 0.30 16 36 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -35.22 385.99 -11.11 -46.33 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -8.86 Total: -4.90 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 0.29 Total: -19.63 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.81 Total: -42.35 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.94 Total: -25.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 24.10 SS G_CDS: -0.58 Total: 23.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.22 -11.11 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581545781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.916 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds