Wall clock time and date at job start Tue Mar 31 2020 12:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00279 * 2 1 4 4 S 1.65601 * 119.99797 * 179.97438 * 2 1 3 5 5 O 1.42100 * 104.27822 * 333.92989 * 4 2 1 6 6 O 1.42103 * 104.27772 * 206.07654 * 4 2 1 7 7 C 1.81399 * 104.44938 * 90.00306 * 4 2 1 8 8 C 1.52999 * 109.46810 * 179.97438 * 7 4 2 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 4 10 10 N 1.46896 * 109.47501 * 180.02562 * 9 8 7 11 11 C 1.46845 * 110.99677 * 294.21046 * 10 9 8 12 12 C 1.53038 * 109.52162 * 174.15956 * 11 10 9 13 13 C 1.53120 * 109.27912 * 59.17918 * 12 11 10 14 14 C 1.53007 * 109.57278 * 182.41028 * 13 12 11 15 15 C 1.50699 * 109.46758 * 294.71226 * 14 13 12 16 16 H 1.07997 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99694 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00196 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46698 * 59.99715 * 19 17 15 21 21 H 1.48501 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46878 * 299.99966 * 19 17 15 23 23 C 1.53121 * 109.15964 * 302.34400 * 13 12 11 24 24 C 1.46847 * 111.00413 * 169.99808 * 10 9 8 25 25 H 1.08994 * 109.47510 * 240.00470 * 1 2 3 26 26 H 1.09001 * 109.47006 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46839 * 120.00144 * 1 2 3 28 28 H 1.08998 * 109.47096 * 269.99857 * 3 2 1 29 29 H 1.09006 * 109.47110 * 29.99539 * 3 2 1 30 30 H 1.09001 * 109.47725 * 149.99380 * 3 2 1 31 31 H 1.09000 * 109.47070 * 299.99993 * 7 4 2 32 32 H 1.09001 * 109.46593 * 59.99990 * 7 4 2 33 33 H 1.09000 * 109.47486 * 299.99969 * 8 7 4 34 34 H 1.09001 * 109.47362 * 60.00691 * 8 7 4 35 35 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 36 36 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 37 37 H 1.08997 * 109.46411 * 294.16980 * 11 10 9 38 38 H 1.09004 * 109.46690 * 54.14536 * 11 10 9 39 39 H 1.09002 * 109.50416 * 299.23326 * 12 11 10 40 40 H 1.08998 * 109.50408 * 179.11946 * 12 11 10 41 41 H 1.08994 * 109.52456 * 62.25290 * 13 12 11 42 42 H 1.09002 * 109.47257 * 54.71330 * 14 13 12 43 43 H 1.08999 * 109.46769 * 174.71588 * 14 13 12 44 44 H 0.96993 * 120.00554 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.50283 * 297.71284 * 23 13 12 46 46 H 1.08994 * 109.50340 * 177.59558 * 23 13 12 47 47 H 1.08997 * 109.45837 * 305.85531 * 24 10 9 48 48 H 1.09004 * 109.45866 * 65.83373 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.3969 -2.3559 0.6063 6 8 3.5394 -1.1190 0.6058 7 6 2.5194 -1.8269 -1.7558 8 6 3.2819 -3.1466 -1.8891 9 6 3.4735 -3.4776 -3.3706 10 7 4.2051 -4.7449 -3.4986 11 6 5.5744 -4.6163 -2.9841 12 6 6.2569 -5.9860 -2.9985 13 6 6.2787 -6.5249 -4.4316 14 6 6.9058 -7.9205 -4.4449 15 6 8.3544 -7.8241 -4.0409 16 1 8.7847 -6.8637 -3.7984 17 6 9.1305 -8.9622 -3.9808 18 7 8.6064 -10.1319 -4.2756 19 14 10.9260 -8.8429 -3.4793 20 1 11.0210 -8.2712 -2.1122 21 1 11.5346 -10.1974 -3.4924 22 1 11.6493 -7.9654 -4.4343 23 6 4.8440 -6.6035 -4.9608 24 6 4.2025 -5.2160 -4.8895 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5833 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 1.5452 -1.9197 -2.2359 32 1 3.0867 -1.0297 -2.2361 33 1 4.2561 -3.0534 -1.4091 34 1 2.7149 -3.9440 -1.4087 35 1 2.4994 -3.5706 -3.8509 36 1 4.0406 -2.6802 -3.8507 37 1 6.1351 -3.9246 -3.6127 38 1 5.5446 -4.2362 -1.9629 39 1 5.7046 -6.6746 -2.3591 40 1 7.2784 -5.8875 -2.6312 41 1 6.8639 -5.8566 -5.0632 42 1 6.3749 -8.5641 -3.7434 43 1 6.8356 -8.3407 -5.4482 44 1 9.1524 -10.9324 -4.2337 45 1 4.2694 -7.3018 -4.3523 46 1 4.8561 -6.9461 -5.9954 47 1 3.1761 -5.2713 -5.2522 48 1 4.7698 -4.5214 -5.5091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581545781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:17 Heat of formation + Delta-G solvation = -109.762469 kcal Electronic energy + Delta-G solvation = -25058.978882 eV Core-core repulsion = 21467.317545 eV Total energy + Delta-G solvation = -3591.661338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.16919 -38.26348 -37.21323 -36.91762 -36.79008 -34.98634 -33.48860 -31.70946 -29.91745 -28.90519 -27.26356 -25.68346 -25.10908 -24.19575 -22.68840 -21.79217 -20.45134 -19.88374 -18.58213 -18.42710 -17.71563 -17.40673 -16.70881 -16.46707 -16.35396 -15.72296 -15.43183 -15.27756 -15.11393 -14.98102 -14.73888 -14.24206 -14.07955 -13.91470 -13.62765 -13.47105 -13.33419 -13.21983 -13.18675 -13.11522 -13.02250 -12.81046 -12.57199 -12.53625 -12.46454 -12.43805 -12.17873 -12.01107 -11.81267 -11.69882 -11.55422 -11.23283 -10.84198 -10.69054 -10.51269 -9.94720 -9.22015 -8.17198 -6.26891 -0.78527 1.38905 1.41927 1.49475 1.67554 2.41546 2.75808 2.98792 3.13785 3.15588 3.64759 3.76729 3.89539 3.95958 4.06515 4.08523 4.16685 4.33324 4.40577 4.52405 4.57022 4.57436 4.59657 4.67495 4.70187 4.77130 4.79971 4.84255 4.92561 4.99579 5.00029 5.02408 5.04949 5.08777 5.13778 5.17413 5.38701 5.42090 5.46098 5.57928 5.60372 5.81415 5.89657 6.16496 6.24176 6.31081 6.89153 7.41265 8.94458 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.002284 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.403483 B =12254.520235 C =12890.736061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.010 6.010 3 C 0.073 3.927 4 S 2.609 3.391 5 O -0.992 6.992 6 O -0.993 6.993 7 C -0.601 4.601 8 C -0.121 4.121 9 C 0.066 3.934 10 N -0.553 5.553 11 C 0.059 3.941 12 C -0.097 4.097 13 C -0.075 4.075 14 C 0.034 3.966 15 C -0.530 4.530 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.961 3.039 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.109 4.109 24 C 0.068 3.932 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.049 0.951 42 H -0.014 1.014 43 H -0.014 1.014 44 H 0.262 0.738 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 26.765 3.479 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.850 5.850 3 C -0.072 4.072 4 S 2.706 3.294 5 O -0.982 6.982 6 O -0.984 6.984 7 C -0.733 4.733 8 C -0.161 4.161 9 C -0.063 4.063 10 N -0.279 5.279 11 C -0.069 4.069 12 C -0.135 4.135 13 C -0.094 4.094 14 C -0.003 4.003 15 C -0.568 4.568 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.147 4.147 24 C -0.060 4.060 25 H 0.070 0.930 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.004 0.996 43 H 0.005 0.995 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.803 25.821 4.557 32.265 hybrid contribution 1.473 -0.041 -0.784 1.669 sum -17.330 25.780 3.773 31.291 Atomic orbital electron populations 1.21765 0.77025 1.05284 1.02384 1.57165 1.15945 1.21376 1.90508 1.21855 0.97153 0.84563 1.03599 1.04813 0.72810 0.73030 0.78706 1.93545 1.65281 1.63963 1.75439 1.93540 1.45838 1.83452 1.75550 1.30377 1.12002 1.06845 1.24100 1.21406 1.00637 0.94620 0.99421 1.22075 0.99559 0.89579 0.95061 1.61869 1.15289 1.29878 1.20832 1.22142 0.88231 0.96250 1.00292 1.21439 0.99401 0.96003 0.96659 1.21093 0.95232 0.96913 0.96144 1.19007 0.94501 0.92541 0.94285 1.21624 0.96735 0.93390 1.45068 0.92211 1.25975 1.03337 0.95152 0.95618 1.70098 1.38095 0.98911 1.50489 0.85566 0.79485 0.77228 0.79171 1.19321 1.21004 1.19156 1.21613 0.95316 0.97296 1.00442 1.22023 1.01142 0.94981 0.87825 0.92957 0.87738 0.90521 0.90334 0.88914 0.91388 0.81996 0.82421 0.91009 0.90193 0.88517 0.93364 0.94585 0.89995 0.93455 0.92650 0.93276 0.99573 0.99519 0.92951 0.92807 0.91874 0.88877 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.26 127.77 1.31 1.91 16 2 N -1.01 -11.38 3.52 -562.70 -1.98 -13.36 16 3 C 0.07 0.56 10.61 127.77 1.36 1.92 16 4 S 2.61 45.67 5.43 -56.49 -0.31 45.37 16 5 O -0.99 -24.79 17.10 -127.65 -2.18 -26.97 16 6 O -0.99 -24.85 16.57 -127.65 -2.12 -26.97 16 7 C -0.60 -6.26 6.18 71.98 0.44 -5.81 16 8 C -0.12 -2.13 5.15 30.60 0.16 -1.98 16 9 C 0.07 1.18 4.96 86.31 0.43 1.61 16 10 N -0.55 -14.46 4.66 -896.38 -4.17 -18.63 16 11 C 0.06 1.72 5.29 86.33 0.46 2.18 16 12 C -0.10 -3.74 5.15 30.65 0.16 -3.58 16 13 C -0.08 -3.14 2.20 -10.71 -0.02 -3.16 16 14 C 0.03 1.82 4.45 29.85 0.13 1.95 16 15 C -0.53 -30.55 8.45 25.60 0.22 -30.34 16 16 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 19 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.11 -3.74 5.38 30.65 0.16 -3.57 16 24 C 0.07 1.76 5.46 86.32 0.47 2.24 16 25 H 0.05 0.57 7.90 -2.39 -0.02 0.55 16 26 H 0.10 0.25 7.79 -2.39 -0.02 0.23 16 27 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.38 7.92 -2.38 -0.02 0.36 16 30 H 0.07 0.78 6.91 -2.39 -0.02 0.76 16 31 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.39 6.43 -2.39 -0.02 1.38 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.36 7.99 -2.39 -0.02 1.34 16 36 H 0.05 0.76 8.12 -2.39 -0.02 0.75 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 2.20 6.21 -2.38 -0.01 2.19 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.29 7.05 -2.39 -0.02 2.27 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 42 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.09 1.96 8.01 -2.39 -0.02 1.94 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.56 385.99 -1.81 -81.37 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.90 Total: 6.29 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 5.73 Total: -36.38 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -5.87 Total: -90.01 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -4.30 Total: -53.94 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.31 Total: 45.37 kcal Total: -79.56 -1.81 -81.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581545781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.390 kcal (2) G-P(sol) polarization free energy of solvation -79.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds