Wall clock time and date at job start Tue Mar 31 2020 11:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47134 * 2 1 4 4 C 1.46906 * 111.00012 * 314.30110 * 3 2 1 5 5 C 1.53696 * 109.25898 * 172.60693 * 4 3 2 6 6 N 1.47075 * 108.27386 * 54.08063 * 5 4 3 7 7 S 1.65608 * 120.87815 * 128.75540 * 6 5 4 8 8 O 1.42102 * 104.27540 * 153.64962 * 7 6 5 9 9 O 1.42095 * 104.27707 * 25.79323 * 7 6 5 10 10 C 1.81396 * 104.44869 * 269.72122 * 7 6 5 11 11 C 1.53004 * 109.47142 * 180.02562 * 10 7 6 12 12 C 1.52998 * 109.47200 * 59.99836 * 11 10 7 13 13 C 1.53005 * 109.46471 * 299.99809 * 11 10 7 14 14 C 1.50701 * 109.47211 * 180.02562 * 11 10 7 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 11 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.47078 * 118.24220 * 308.48266 * 6 5 4 23 23 C 1.46893 * 111.00256 * 190.00040 * 3 2 1 24 24 H 1.08995 * 109.49458 * 67.29342 * 23 3 2 25 25 C 1.53000 * 109.51352 * 307.22675 * 23 3 2 26 26 H 1.09001 * 109.46544 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47045 * 299.99933 * 1 2 3 28 28 H 1.09000 * 109.46913 * 60.00472 * 1 2 3 29 29 H 1.08995 * 109.47507 * 239.99824 * 2 1 3 30 30 H 1.09000 * 109.46913 * 119.99528 * 2 1 3 31 31 H 1.08995 * 109.48929 * 292.70755 * 4 3 2 32 32 H 1.09000 * 109.48963 * 52.78245 * 4 3 2 33 33 H 1.09000 * 109.79376 * 294.42033 * 5 4 3 34 34 H 1.08998 * 109.69986 * 173.68438 * 5 4 3 35 35 H 1.09000 * 109.47615 * 59.99959 * 10 7 6 36 36 H 1.09007 * 109.47380 * 299.99639 * 10 7 6 37 37 H 1.09004 * 109.46783 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46870 * 300.00189 * 12 11 10 39 39 H 1.08998 * 109.47156 * 60.00128 * 12 11 10 40 40 H 1.08995 * 109.47438 * 299.99599 * 13 11 10 41 41 H 1.08996 * 109.47069 * 60.00459 * 13 11 10 42 42 H 1.09004 * 109.46658 * 179.97438 * 13 11 10 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.62936 * 171.16562 * 22 6 5 45 45 H 1.09000 * 109.62815 * 291.55753 * 22 6 5 46 46 H 1.09007 * 109.47211 * 300.11798 * 25 23 3 47 47 H 1.09000 * 109.47275 * 60.11792 * 25 23 3 48 48 H 1.09003 * 109.47133 * 180.12155 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2921 2.2006 -0.9815 5 6 1.7024 3.6731 -0.8208 6 7 3.1682 3.7557 -0.9088 7 16 3.8987 4.8249 -1.9411 8 8 5.1634 5.0790 -1.3450 9 8 2.9432 5.8640 -2.1033 10 6 4.0986 3.8969 -3.4869 11 6 4.7716 4.7877 -4.5331 12 6 6.1446 5.2277 -4.0212 13 6 3.9027 6.0212 -4.7874 14 6 4.9371 4.0170 -5.8175 15 1 4.5967 2.9940 -5.8811 16 6 5.5286 4.6159 -6.9094 17 7 5.9434 5.8615 -6.8320 18 14 5.7408 3.6580 -8.4991 19 1 4.5430 3.8490 -9.3558 20 1 6.9452 4.1489 -9.2159 21 1 5.9030 2.2148 -8.1895 22 6 3.9680 2.8678 -0.0514 23 6 3.4685 1.4312 -0.2381 24 1 3.6806 1.1017 -1.2552 25 6 4.1794 0.5102 0.7555 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5345 1.8604 -1.9883 32 1 0.2198 2.1026 -0.8124 33 1 1.3723 4.0444 0.1494 34 1 1.2537 4.2684 -1.6160 35 1 3.1205 3.5831 -3.8515 36 1 4.7179 3.0183 -3.3058 37 1 6.6238 5.8627 -4.7664 38 1 6.0244 5.7853 -3.0923 39 1 6.7635 4.3489 -3.8400 40 1 2.9246 5.7077 -5.1522 41 1 3.7827 6.5788 -3.8586 42 1 4.3824 6.6560 -5.5325 43 1 6.3599 6.2827 -7.6001 44 1 5.0178 2.9306 -0.3376 45 1 3.8542 3.1655 0.9910 46 1 3.9663 0.8395 1.7726 47 1 3.8238 -0.5115 0.6224 48 1 5.2545 0.5467 0.5796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590750852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:31 Heat of formation + Delta-G solvation = -61.883788 kcal Electronic energy + Delta-G solvation = -27217.517191 eV Core-core repulsion = 23627.932029 eV Total energy + Delta-G solvation = -3589.585162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.48950 -36.61765 -36.28744 -35.44910 -35.09815 -33.04423 -31.67611 -30.38930 -27.53246 -26.73335 -26.02383 -25.72832 -25.23723 -22.72690 -22.00302 -20.10912 -19.31567 -18.45477 -17.43932 -16.13318 -16.00438 -15.80780 -15.45698 -15.30811 -14.93146 -14.74440 -14.55224 -14.30719 -13.55743 -13.21889 -13.04093 -12.73546 -12.56567 -12.51687 -12.27577 -12.20785 -12.11141 -11.97494 -11.83560 -11.57211 -11.26109 -11.16359 -11.13853 -11.07049 -10.94761 -10.81021 -10.70339 -10.69101 -10.36737 -10.28457 -10.11349 -9.66715 -9.58151 -8.99886 -8.65731 -8.41639 -8.37063 -6.04782 -4.16899 0.82589 3.07328 3.24088 3.31496 3.33319 3.66425 4.32195 4.40253 4.56696 4.57876 4.74443 4.86333 4.90888 5.06395 5.17012 5.19672 5.20716 5.22984 5.29358 5.39960 5.46863 5.58347 5.63545 5.66089 5.69504 5.73237 5.79367 5.86523 5.91871 5.93529 6.11242 6.13078 6.36608 6.67159 6.69086 6.78530 6.89728 6.92137 6.93683 7.03298 7.29983 7.49160 7.66187 7.96670 8.08217 8.31634 8.81392 9.48528 10.96519 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.004231 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.706311 B = 6615.789655 C = 7236.332602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.032 3.968 5 C 0.127 3.873 6 N -1.012 6.012 7 S 2.593 3.407 8 O -0.961 6.961 9 O -0.961 6.961 10 C -0.582 4.582 11 C 0.082 3.918 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.501 4.501 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.133 3.867 23 C 0.065 3.935 24 H 0.049 0.951 25 C -0.147 4.147 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.262 0.738 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -10.671 13.648 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.257 5.257 4 C -0.098 4.098 5 C 0.002 3.998 6 N -0.847 5.847 7 S 2.692 3.308 8 O -0.952 6.952 9 O -0.952 6.952 10 C -0.715 4.715 11 C 0.079 3.921 12 C -0.221 4.221 13 C -0.220 4.220 14 C -0.541 4.541 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.007 3.993 23 C -0.045 4.045 24 H 0.067 0.933 25 C -0.206 4.206 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.969 -9.413 14.263 18.856 hybrid contribution 0.152 -1.594 -2.114 2.652 sum -7.817 -11.007 12.149 18.162 Atomic orbital electron populations 1.21964 0.95140 1.01828 1.02583 1.22123 0.95531 0.89375 1.00820 1.62004 1.03421 1.10425 1.49852 1.22756 0.99342 0.93726 0.93940 1.21542 0.79378 0.95533 1.03390 1.58115 1.14044 1.56916 1.55667 1.05752 0.73740 0.75043 0.76282 1.93532 1.42464 1.83589 1.75585 1.93531 1.62149 1.52805 1.86673 1.30580 1.09604 1.13382 1.17923 1.17936 0.91393 0.91156 0.91572 1.22268 0.99048 1.01069 0.99691 1.22265 0.99016 0.99355 1.01397 1.20925 1.39642 0.98485 0.95027 0.92440 1.24932 0.95109 0.94993 0.98667 1.69798 1.40196 1.11674 1.30468 0.86544 0.77713 0.80075 0.83345 1.20636 1.21084 1.20018 1.21472 0.94735 0.87422 0.95651 1.22067 0.87831 0.96156 0.98475 0.93343 1.21873 1.00224 0.98795 0.99664 0.92298 0.91722 0.92202 0.94949 0.90416 0.94119 0.88941 0.90660 0.88849 0.86679 0.86703 0.88617 0.95374 0.94535 0.94523 0.95389 0.88664 0.92725 0.88918 0.90646 0.91483 0.92264 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.16 37.16 0.34 -0.82 16 2 C 0.05 0.42 5.03 -3.82 -0.02 0.40 16 3 N -0.53 -5.55 4.62 -226.05 -1.05 -6.60 16 4 C 0.03 0.34 5.06 -3.46 -0.02 0.32 16 5 C 0.13 1.61 6.50 -3.37 -0.02 1.58 16 6 N -1.01 -14.93 3.25 -112.98 -0.37 -15.30 16 7 S 2.59 49.19 4.45 -107.50 -0.48 48.71 16 8 O -0.96 -20.37 14.41 -57.54 -0.83 -21.20 16 9 O -0.96 -20.33 14.40 -57.54 -0.83 -21.16 16 10 C -0.58 -11.50 5.12 37.16 0.19 -11.31 16 11 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 12 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 13 C -0.16 -4.02 7.78 37.16 0.29 -3.74 16 14 C -0.50 -13.19 8.01 -34.44 -0.28 -13.47 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.13 1.71 5.75 -3.60 -0.02 1.69 16 23 C 0.06 0.71 2.56 -67.59 -0.17 0.54 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -1.28 8.73 37.16 0.32 -0.95 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.45 6.18 -51.93 -0.32 0.12 16 29 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.08 0.61 6.85 -51.93 -0.36 0.26 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.81 5.73 -51.93 -0.30 0.52 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.18 7.18 -51.93 -0.37 0.81 16 35 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 36 H 0.11 2.09 8.14 -51.92 -0.42 1.67 16 37 H 0.10 2.55 6.06 -51.93 -0.31 2.23 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 42 H 0.09 2.54 6.08 -51.93 -0.32 2.22 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.09 1.21 7.19 -51.93 -0.37 0.84 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -31.03 363.09 -10.14 -41.17 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.29 Total: 2.87 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 0.73 Total: -25.95 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.89 Total: -45.52 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.66 Total: -42.37 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 49.19 SS G_CDS: -0.48 Total: 48.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.03 -10.14 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590750852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.714 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds