Wall clock time and date at job start Tue Mar 31 2020 11:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47134 * 2 1 4 4 C 1.46906 * 111.00012 * 314.30110 * 3 2 1 5 5 C 1.53696 * 109.25898 * 172.60693 * 4 3 2 6 6 N 1.47075 * 108.27386 * 54.08063 * 5 4 3 7 7 S 1.65608 * 120.87815 * 128.75540 * 6 5 4 8 8 O 1.42102 * 104.27540 * 153.64962 * 7 6 5 9 9 O 1.42095 * 104.27707 * 25.79323 * 7 6 5 10 10 C 1.81396 * 104.44869 * 269.72122 * 7 6 5 11 11 C 1.53004 * 109.47142 * 180.02562 * 10 7 6 12 12 C 1.52998 * 109.47200 * 59.99836 * 11 10 7 13 13 C 1.53005 * 109.46471 * 299.99809 * 11 10 7 14 14 C 1.50701 * 109.47211 * 180.02562 * 11 10 7 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 11 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.47078 * 118.24220 * 308.48266 * 6 5 4 23 23 C 1.46893 * 111.00256 * 190.00040 * 3 2 1 24 24 H 1.08995 * 109.49458 * 67.29342 * 23 3 2 25 25 C 1.53000 * 109.51352 * 307.22675 * 23 3 2 26 26 H 1.09001 * 109.46544 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47045 * 299.99933 * 1 2 3 28 28 H 1.09000 * 109.46913 * 60.00472 * 1 2 3 29 29 H 1.08995 * 109.47507 * 239.99824 * 2 1 3 30 30 H 1.09000 * 109.46913 * 119.99528 * 2 1 3 31 31 H 1.08995 * 109.48929 * 292.70755 * 4 3 2 32 32 H 1.09000 * 109.48963 * 52.78245 * 4 3 2 33 33 H 1.09000 * 109.79376 * 294.42033 * 5 4 3 34 34 H 1.08998 * 109.69986 * 173.68438 * 5 4 3 35 35 H 1.09000 * 109.47615 * 59.99959 * 10 7 6 36 36 H 1.09007 * 109.47380 * 299.99639 * 10 7 6 37 37 H 1.09004 * 109.46783 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46870 * 300.00189 * 12 11 10 39 39 H 1.08998 * 109.47156 * 60.00128 * 12 11 10 40 40 H 1.08995 * 109.47438 * 299.99599 * 13 11 10 41 41 H 1.08996 * 109.47069 * 60.00459 * 13 11 10 42 42 H 1.09004 * 109.46658 * 179.97438 * 13 11 10 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.62936 * 171.16562 * 22 6 5 45 45 H 1.09000 * 109.62815 * 291.55753 * 22 6 5 46 46 H 1.09007 * 109.47211 * 300.11798 * 25 23 3 47 47 H 1.09000 * 109.47275 * 60.11792 * 25 23 3 48 48 H 1.09003 * 109.47133 * 180.12155 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2921 2.2006 -0.9815 5 6 1.7024 3.6731 -0.8208 6 7 3.1682 3.7557 -0.9088 7 16 3.8987 4.8249 -1.9411 8 8 5.1634 5.0790 -1.3450 9 8 2.9432 5.8640 -2.1033 10 6 4.0986 3.8969 -3.4869 11 6 4.7716 4.7877 -4.5331 12 6 6.1446 5.2277 -4.0212 13 6 3.9027 6.0212 -4.7874 14 6 4.9371 4.0170 -5.8175 15 1 4.5967 2.9940 -5.8811 16 6 5.5286 4.6159 -6.9094 17 7 5.9434 5.8615 -6.8320 18 14 5.7408 3.6580 -8.4991 19 1 4.5430 3.8490 -9.3558 20 1 6.9452 4.1489 -9.2159 21 1 5.9030 2.2148 -8.1895 22 6 3.9680 2.8678 -0.0514 23 6 3.4685 1.4312 -0.2381 24 1 3.6806 1.1017 -1.2552 25 6 4.1794 0.5102 0.7555 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5345 1.8604 -1.9883 32 1 0.2198 2.1026 -0.8124 33 1 1.3723 4.0444 0.1494 34 1 1.2537 4.2684 -1.6160 35 1 3.1205 3.5831 -3.8515 36 1 4.7179 3.0183 -3.3058 37 1 6.6238 5.8627 -4.7664 38 1 6.0244 5.7853 -3.0923 39 1 6.7635 4.3489 -3.8400 40 1 2.9246 5.7077 -5.1522 41 1 3.7827 6.5788 -3.8586 42 1 4.3824 6.6560 -5.5325 43 1 6.3599 6.2827 -7.6001 44 1 5.0178 2.9306 -0.3376 45 1 3.8542 3.1655 0.9910 46 1 3.9663 0.8395 1.7726 47 1 3.8238 -0.5115 0.6224 48 1 5.2545 0.5467 0.5796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590750852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:30 Heat of formation + Delta-G solvation = -82.602856 kcal Electronic energy + Delta-G solvation = -27218.415637 eV Core-core repulsion = 23627.932029 eV Total energy + Delta-G solvation = -3590.483608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36151 -38.21663 -38.16219 -36.95986 -36.18458 -33.87281 -33.65435 -31.18148 -28.43666 -28.31222 -27.72286 -27.28365 -26.96016 -23.65962 -22.76957 -21.41701 -20.78035 -19.79885 -18.86338 -17.93246 -17.31040 -16.99923 -16.83003 -16.61851 -16.14340 -15.79521 -15.71646 -15.23366 -15.01811 -14.74443 -14.48536 -14.39700 -13.90301 -13.78657 -13.56178 -13.20142 -13.16025 -13.02591 -12.91775 -12.81521 -12.79754 -12.73429 -12.59247 -12.51098 -12.22709 -12.17814 -12.13161 -12.00242 -11.95190 -11.75680 -11.60208 -11.51660 -11.31730 -10.65613 -10.43752 -10.02838 -9.21419 -8.05044 -6.24011 -0.68197 1.42234 1.44006 1.52626 1.73759 2.42301 2.85212 2.89604 3.15082 3.19490 3.57339 3.89206 3.98792 4.01110 4.12097 4.15362 4.27300 4.29521 4.43903 4.45275 4.53540 4.56265 4.65142 4.68955 4.81262 4.82481 4.83866 4.91279 4.94330 4.97340 5.00233 5.04596 5.06672 5.16648 5.19244 5.33176 5.34999 5.39949 5.46878 5.59706 5.61807 5.94302 6.08408 6.11576 6.17546 6.31524 6.80142 7.44340 8.94896 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.004231 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.706311 B = 6615.789655 C = 7236.332602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.034 3.966 5 C 0.119 3.881 6 N -1.004 6.004 7 S 2.609 3.391 8 O -0.987 6.987 9 O -0.986 6.986 10 C -0.583 4.583 11 C 0.069 3.931 12 C -0.158 4.158 13 C -0.158 4.158 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.019 3.981 17 N -0.907 5.907 18 Si 0.954 3.046 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.125 3.875 23 C 0.066 3.934 24 H 0.039 0.961 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.262 0.738 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -12.840 14.533 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.095 4.095 5 C -0.006 4.006 6 N -0.843 5.843 7 S 2.708 3.292 8 O -0.977 6.977 9 O -0.976 6.976 10 C -0.716 4.716 11 C 0.067 3.933 12 C -0.216 4.216 13 C -0.216 4.216 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.181 4.181 17 N -0.546 5.546 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.193 1.193 22 C 0.000 4.000 23 C -0.045 4.045 24 H 0.057 0.943 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.066 -11.590 15.142 21.114 hybrid contribution 0.457 -0.932 -2.308 2.531 sum -8.609 -12.522 12.834 19.890 Atomic orbital electron populations 1.21940 0.94096 1.02669 1.02491 1.22203 0.96408 0.88185 1.01105 1.62031 1.02996 1.11538 1.49506 1.22761 1.00625 0.92327 0.93795 1.21800 0.77720 0.97160 1.03914 1.57790 1.15188 1.56633 1.54659 1.04955 0.73041 0.75061 0.76127 1.93490 1.44026 1.84299 1.75867 1.93490 1.62609 1.54407 1.87088 1.30499 1.10286 1.13171 1.17601 1.17935 0.91313 0.91544 0.92518 1.22190 0.99546 1.00791 0.99085 1.22187 0.99040 0.99495 1.00839 1.21247 1.39561 0.98777 0.96027 0.92161 1.25668 0.95003 0.95789 1.01616 1.69937 1.40667 1.12873 1.31118 0.85614 0.77495 0.79074 0.79780 1.20298 1.21124 1.19283 1.21715 0.94391 0.88298 0.95597 1.22051 0.88579 0.95100 0.98730 0.94292 1.21851 1.00276 0.98810 0.99143 0.91084 0.91664 0.92353 0.95343 0.89402 0.94757 0.86772 0.89581 0.89152 0.85117 0.85249 0.90942 0.95005 0.94181 0.94129 0.95011 0.91003 0.92856 0.89432 0.89676 0.91006 0.91099 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.16 71.98 0.66 -1.17 16 2 C 0.05 0.70 5.03 86.30 0.43 1.13 16 3 N -0.53 -9.85 4.62 -869.09 -4.02 -13.87 16 4 C 0.03 0.66 5.06 86.54 0.44 1.09 16 5 C 0.12 2.80 6.50 86.50 0.56 3.36 16 6 N -1.00 -28.41 3.25 -511.34 -1.66 -30.07 16 7 S 2.61 97.83 4.45 -56.49 -0.25 97.57 16 8 O -0.99 -41.69 14.41 -127.65 -1.84 -43.53 16 9 O -0.99 -41.49 14.40 -127.65 -1.84 -43.33 16 10 C -0.58 -22.66 5.12 71.98 0.37 -22.29 16 11 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 12 C -0.16 -7.95 7.77 71.98 0.56 -7.39 16 13 C -0.16 -7.92 7.78 71.98 0.56 -7.36 16 14 C -0.52 -27.08 8.01 25.60 0.21 -26.87 16 15 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 16 C 0.02 1.00 5.15 84.65 0.44 1.43 16 17 N -0.91 -50.37 9.35 21.45 0.20 -50.17 16 18 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 C 0.13 3.03 5.75 86.35 0.50 3.53 16 23 C 0.07 1.31 2.56 45.00 0.12 1.42 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 25 C -0.14 -2.13 8.73 71.98 0.63 -1.50 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.71 6.18 -2.39 -0.01 0.69 16 29 H 0.03 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.09 1.11 6.85 -2.39 -0.02 1.09 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.70 5.73 -2.39 -0.01 1.68 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.18 7.18 -2.39 -0.02 2.16 16 35 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 36 H 0.13 4.57 8.14 -2.39 -0.02 4.56 16 37 H 0.07 3.96 6.06 -2.38 -0.01 3.95 16 38 H 0.03 1.53 5.46 -2.38 -0.01 1.51 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 42 H 0.07 3.92 6.08 -2.38 -0.01 3.91 16 43 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.09 2.20 7.19 -2.39 -0.02 2.18 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.07 0.90 6.56 -2.39 -0.02 0.89 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.66 363.09 -1.02 -66.69 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.93 Total: 23.83 kcal Atomic # 6 Polarization: -56.71 SS G_CDS: 5.44 Total: -51.27 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -5.48 Total: -94.12 kcal Atomic # 8 Polarization: -83.18 SS G_CDS: -3.68 Total: -86.86 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 97.83 SS G_CDS: -0.25 Total: 97.57 kcal Total: -65.66 -1.02 -66.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590750852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.917 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds