Wall clock time and date at job start Tue Mar 31 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47319 * 2 1 4 4 C 1.46501 * 119.99805 * 276.59775 * 3 2 1 5 5 C 1.50706 * 109.46604 * 274.99262 * 4 3 2 6 6 H 1.07999 * 120.00162 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99551 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99958 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00228 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47412 * 90.00200 * 9 7 5 11 11 H 1.48506 * 109.47046 * 210.00159 * 9 7 5 12 12 H 1.48502 * 109.47309 * 329.99741 * 9 7 5 13 13 S 1.65595 * 120.00087 * 96.58953 * 3 2 1 14 14 O 1.42100 * 106.40357 * 340.24727 * 13 3 2 15 15 O 1.42102 * 106.40421 * 207.32947 * 13 3 2 16 16 N 1.65600 * 107.21698 * 93.78957 * 13 3 2 17 17 C 1.46496 * 120.00415 * 66.43269 * 16 13 3 18 18 H 1.09006 * 115.55798 * 359.97438 * 17 16 13 19 19 C 1.52998 * 117.50066 * 214.29549 * 17 16 13 20 20 C 1.53001 * 117.49962 * 145.66972 * 17 16 13 21 21 H 1.09005 * 117.49959 * 359.97438 * 20 17 16 22 22 C 1.52999 * 117.50014 * 214.98361 * 20 17 16 23 23 C 1.53002 * 109.46784 * 175.00346 * 22 20 17 24 24 C 1.53001 * 109.47299 * 59.99989 * 23 22 20 25 25 C 1.52995 * 109.47087 * 299.99675 * 23 22 20 26 26 C 1.52999 * 109.46784 * 179.97438 * 23 22 20 27 27 H 1.08999 * 109.47485 * 305.01528 * 1 2 3 28 28 H 1.09003 * 109.47052 * 65.01472 * 1 2 3 29 29 H 1.09000 * 109.47493 * 185.00526 * 1 2 3 30 30 H 1.08999 * 109.47219 * 239.99947 * 2 1 3 31 31 H 1.08994 * 109.47152 * 119.99590 * 2 1 3 32 32 H 1.09004 * 109.47410 * 34.99369 * 4 3 2 33 33 H 1.08995 * 109.47468 * 155.00002 * 4 3 2 34 34 H 0.97003 * 120.00076 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99569 * 246.43929 * 16 13 3 36 36 H 1.08997 * 117.49535 * 145.02261 * 19 17 16 37 37 H 1.08997 * 117.50156 * 0.02562 * 19 17 16 38 38 H 1.09000 * 109.46965 * 55.00359 * 22 20 17 39 39 H 1.09001 * 109.47086 * 295.00192 * 22 20 17 40 40 H 1.08997 * 109.46790 * 299.99711 * 24 23 22 41 41 H 1.09001 * 109.47168 * 59.99788 * 24 23 22 42 42 H 1.08997 * 109.46923 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.47184 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47537 * 299.99944 * 25 23 22 45 45 H 1.09000 * 109.47103 * 60.00609 * 25 23 22 46 46 H 1.09001 * 109.47086 * 299.99846 * 26 23 22 47 47 H 1.09000 * 109.47697 * 59.99877 * 26 23 22 48 48 H 1.08997 * 109.47327 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1251 2.1204 -1.2604 5 6 3.4450 1.8064 -1.9165 6 1 4.1350 1.1242 -1.4423 7 6 3.7715 2.3902 -3.1222 8 7 4.9231 2.1159 -3.6951 9 14 2.5783 3.5707 -3.9419 10 1 2.8551 4.9546 -3.4801 11 1 2.7444 3.4982 -5.4159 12 1 1.1868 3.1976 -3.5818 13 16 2.4495 2.1070 1.4246 14 8 1.8215 1.3634 2.4600 15 8 2.2520 3.5021 1.2401 16 7 4.0799 1.8865 1.6132 17 6 5.0178 2.5303 0.6902 18 1 4.5645 3.1374 -0.0934 19 6 6.3004 1.7717 0.3432 20 6 6.3598 2.9967 1.2580 21 1 6.5447 2.8250 2.3185 22 6 6.9629 4.2797 0.6825 23 6 8.2297 4.6413 1.4605 24 6 9.2444 3.5025 1.3407 25 6 7.8788 4.8589 2.9337 26 6 8.8331 5.9240 0.8846 27 1 -0.3634 0.5896 0.8416 28 1 -0.3633 0.4341 -0.9315 29 1 -0.3634 -1.0237 0.0897 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.3109 1.8276 -1.9234 33 1 2.0641 3.1901 -1.0605 34 1 5.1531 2.5268 -4.5431 35 1 4.4138 1.3309 2.3349 36 1 6.6909 1.8799 -0.6687 37 1 6.4462 0.7935 0.8012 38 1 6.2400 5.0910 0.7679 39 1 7.2128 4.1247 -0.3671 40 1 8.8147 2.5885 1.7507 41 1 9.4944 3.3474 0.2911 42 1 10.1470 3.7603 1.8945 43 1 8.7815 5.1161 3.4880 44 1 7.1560 5.6703 3.0191 45 1 7.4493 3.9449 3.3437 46 1 9.0831 5.7685 -0.1649 47 1 8.1105 6.7356 0.9695 48 1 9.7353 6.1819 1.4390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593627685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:05 Heat of formation + Delta-G solvation = -75.650859 kcal Electronic energy + Delta-G solvation = -26854.536132 eV Core-core repulsion = 23264.353985 eV Total energy + Delta-G solvation = -3590.182147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -38.64205 -36.74990 -36.27543 -36.04881 -35.28329 -32.66586 -31.79674 -30.23860 -27.28829 -27.16567 -27.12616 -26.84533 -22.92683 -21.58815 -21.52515 -20.59823 -19.03370 -18.33525 -17.27446 -16.93154 -16.67390 -16.11715 -15.28795 -14.51270 -14.39276 -14.31297 -14.13328 -13.94302 -13.44652 -13.10764 -13.00046 -12.71901 -12.52665 -12.21753 -12.15488 -12.01072 -11.90796 -11.62310 -11.60516 -11.58293 -11.47776 -11.43818 -11.39482 -11.15275 -11.08852 -10.99071 -10.59388 -10.49989 -10.48686 -10.39300 -10.24904 -10.13915 -9.58084 -9.41454 -8.66951 -8.38478 -8.12092 -6.18332 -4.17951 1.23055 3.23872 3.30920 3.35466 3.45748 4.08055 4.32930 4.38943 4.81175 4.95316 4.99883 5.00573 5.13774 5.34658 5.41976 5.46084 5.54248 5.59756 5.65974 5.68840 5.70225 5.76223 5.80271 5.83538 5.89199 5.98363 5.99991 6.02441 6.14890 6.22288 6.24555 6.28984 6.38956 6.48632 6.50521 6.54698 6.56852 6.58371 6.81695 6.82097 6.96602 7.12310 7.26489 7.48172 7.57154 8.39431 8.88553 9.42777 10.92961 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.005517 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.722480 B = 5074.107588 C = 6643.183435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.986 5.986 4 C 0.211 3.789 5 C -0.542 4.542 6 H 0.089 0.911 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.790 3.210 14 O -0.999 6.999 15 O -0.982 6.982 16 N -1.098 6.098 17 C 0.111 3.889 18 H 0.152 0.848 19 C -0.170 4.170 20 C -0.170 4.170 21 H 0.101 0.899 22 C -0.079 4.079 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 0.521 9.041 9.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.087 3.913 5 C -0.581 4.581 6 H 0.107 0.893 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.689 3.311 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.798 3.202 14 O -0.983 6.983 15 O -0.965 6.965 16 N -0.852 5.852 17 C 0.003 3.997 18 H 0.169 0.831 19 C -0.209 4.209 20 C -0.191 4.191 21 H 0.119 0.881 22 C -0.117 4.117 23 C -0.066 4.066 24 C -0.195 4.195 25 C -0.199 4.199 26 C -0.199 4.199 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.435 1.149 9.315 9.994 hybrid contribution -0.069 0.047 -0.615 0.621 sum 3.366 1.197 8.700 9.404 Atomic orbital electron populations 1.22197 0.96970 1.01491 1.02140 1.21009 0.93491 0.82567 1.02653 1.57489 1.78469 1.22903 1.23799 1.19620 0.98555 0.91790 0.81323 1.21539 1.01708 1.28865 1.05993 0.89297 1.24806 0.94885 0.96022 0.96675 1.69878 1.21496 1.43428 1.17824 0.87060 0.82562 0.82410 0.79066 1.19783 1.21135 1.18904 1.01593 0.72524 0.73569 0.72532 1.93551 1.74464 1.73719 1.56604 1.93569 1.84991 1.31752 1.86216 1.55542 1.25589 1.63572 1.40536 1.21595 0.84648 0.99503 0.93955 0.83103 1.23426 1.01802 0.94893 1.00810 1.22932 1.01392 0.96089 0.98683 0.88103 1.21230 0.95371 0.95755 0.99303 1.20506 0.95525 0.95254 0.95352 1.21848 0.97790 0.98175 1.01699 1.21933 1.00802 1.01763 0.95443 1.21873 1.00222 0.96987 1.00810 0.92814 0.92296 0.92142 0.89949 0.91401 0.94585 0.94164 0.92574 0.76278 0.87321 0.89691 0.91607 0.91069 0.92281 0.92643 0.93576 0.93311 0.92753 0.92383 0.92583 0.92772 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.23 37.15 0.38 -2.15 16 2 C 0.13 2.17 6.10 -4.04 -0.02 2.14 16 3 N -0.99 -19.28 2.83 -115.66 -0.33 -19.61 16 4 C 0.21 4.70 4.51 -5.19 -0.02 4.68 16 5 C -0.54 -13.32 7.88 -34.44 -0.27 -13.59 16 6 H 0.09 2.30 7.39 -52.49 -0.39 1.91 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -24.23 13.96 55.43 0.77 -23.46 16 9 Si 0.86 19.99 27.47 -169.99 -4.67 15.32 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 13 S 2.79 53.78 6.10 -107.50 -0.66 53.12 16 14 O -1.00 -19.83 16.95 -57.17 -0.97 -20.80 16 15 O -0.98 -21.83 16.47 -57.17 -0.94 -22.77 16 16 N -1.10 -18.31 6.10 -4.89 -0.03 -18.34 16 17 C 0.11 1.97 4.91 -67.93 -0.33 1.63 16 18 H 0.15 3.16 6.69 -51.93 -0.35 2.82 16 19 C -0.17 -2.77 10.02 -26.73 -0.27 -3.04 16 20 C -0.17 -2.52 4.18 -90.62 -0.38 -2.90 16 21 H 0.10 1.35 6.06 -51.93 -0.31 1.04 16 22 C -0.08 -1.13 4.55 -26.73 -0.12 -1.25 16 23 C -0.07 -0.78 0.80 -154.51 -0.12 -0.91 16 24 C -0.14 -1.56 8.23 37.16 0.31 -1.25 16 25 C -0.14 -1.57 8.23 37.16 0.31 -1.26 16 26 C -0.14 -1.55 8.47 37.16 0.31 -1.24 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 31 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 32 H 0.04 0.80 7.15 -51.93 -0.37 0.43 16 33 H 0.04 0.94 6.39 -51.93 -0.33 0.61 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.41 5.62 8.96 -34.47 -0.31 5.31 16 36 H 0.11 2.01 8.03 -51.93 -0.42 1.59 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 40 H 0.06 0.68 7.20 -51.93 -0.37 0.30 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.64 6.14 -51.93 -0.32 0.32 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -28.90 387.64 -9.94 -38.84 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.63 Total: 9.03 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.34 Total: -17.18 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.42 Total: -61.41 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.91 Total: -43.57 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.66 Total: 53.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.90 -9.94 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593627685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.813 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds