Wall clock time and date at job start Tue Mar 31 2020 12:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47319 * 2 1 4 4 C 1.46501 * 119.99805 * 276.59775 * 3 2 1 5 5 C 1.50706 * 109.46604 * 274.99262 * 4 3 2 6 6 H 1.07999 * 120.00162 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99551 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99958 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00228 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47412 * 90.00200 * 9 7 5 11 11 H 1.48506 * 109.47046 * 210.00159 * 9 7 5 12 12 H 1.48502 * 109.47309 * 329.99741 * 9 7 5 13 13 S 1.65595 * 120.00087 * 96.58953 * 3 2 1 14 14 O 1.42100 * 106.40357 * 340.24727 * 13 3 2 15 15 O 1.42102 * 106.40421 * 207.32947 * 13 3 2 16 16 N 1.65600 * 107.21698 * 93.78957 * 13 3 2 17 17 C 1.46496 * 120.00415 * 66.43269 * 16 13 3 18 18 H 1.09006 * 115.55798 * 359.97438 * 17 16 13 19 19 C 1.52998 * 117.50066 * 214.29549 * 17 16 13 20 20 C 1.53001 * 117.49962 * 145.66972 * 17 16 13 21 21 H 1.09005 * 117.49959 * 359.97438 * 20 17 16 22 22 C 1.52999 * 117.50014 * 214.98361 * 20 17 16 23 23 C 1.53002 * 109.46784 * 175.00346 * 22 20 17 24 24 C 1.53001 * 109.47299 * 59.99989 * 23 22 20 25 25 C 1.52995 * 109.47087 * 299.99675 * 23 22 20 26 26 C 1.52999 * 109.46784 * 179.97438 * 23 22 20 27 27 H 1.08999 * 109.47485 * 305.01528 * 1 2 3 28 28 H 1.09003 * 109.47052 * 65.01472 * 1 2 3 29 29 H 1.09000 * 109.47493 * 185.00526 * 1 2 3 30 30 H 1.08999 * 109.47219 * 239.99947 * 2 1 3 31 31 H 1.08994 * 109.47152 * 119.99590 * 2 1 3 32 32 H 1.09004 * 109.47410 * 34.99369 * 4 3 2 33 33 H 1.08995 * 109.47468 * 155.00002 * 4 3 2 34 34 H 0.97003 * 120.00076 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99569 * 246.43929 * 16 13 3 36 36 H 1.08997 * 117.49535 * 145.02261 * 19 17 16 37 37 H 1.08997 * 117.50156 * 0.02562 * 19 17 16 38 38 H 1.09000 * 109.46965 * 55.00359 * 22 20 17 39 39 H 1.09001 * 109.47086 * 295.00192 * 22 20 17 40 40 H 1.08997 * 109.46790 * 299.99711 * 24 23 22 41 41 H 1.09001 * 109.47168 * 59.99788 * 24 23 22 42 42 H 1.08997 * 109.46923 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.47184 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47537 * 299.99944 * 25 23 22 45 45 H 1.09000 * 109.47103 * 60.00609 * 25 23 22 46 46 H 1.09001 * 109.47086 * 299.99846 * 26 23 22 47 47 H 1.09000 * 109.47697 * 59.99877 * 26 23 22 48 48 H 1.08997 * 109.47327 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1251 2.1204 -1.2604 5 6 3.4450 1.8064 -1.9165 6 1 4.1350 1.1242 -1.4423 7 6 3.7715 2.3902 -3.1222 8 7 4.9231 2.1159 -3.6951 9 14 2.5783 3.5707 -3.9419 10 1 2.8551 4.9546 -3.4801 11 1 2.7444 3.4982 -5.4159 12 1 1.1868 3.1976 -3.5818 13 16 2.4495 2.1070 1.4246 14 8 1.8215 1.3634 2.4600 15 8 2.2520 3.5021 1.2401 16 7 4.0799 1.8865 1.6132 17 6 5.0178 2.5303 0.6902 18 1 4.5645 3.1374 -0.0934 19 6 6.3004 1.7717 0.3432 20 6 6.3598 2.9967 1.2580 21 1 6.5447 2.8250 2.3185 22 6 6.9629 4.2797 0.6825 23 6 8.2297 4.6413 1.4605 24 6 9.2444 3.5025 1.3407 25 6 7.8788 4.8589 2.9337 26 6 8.8331 5.9240 0.8846 27 1 -0.3634 0.5896 0.8416 28 1 -0.3633 0.4341 -0.9315 29 1 -0.3634 -1.0237 0.0897 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.3109 1.8276 -1.9234 33 1 2.0641 3.1901 -1.0605 34 1 5.1531 2.5268 -4.5431 35 1 4.4138 1.3309 2.3349 36 1 6.6909 1.8799 -0.6687 37 1 6.4462 0.7935 0.8012 38 1 6.2400 5.0910 0.7679 39 1 7.2128 4.1247 -0.3671 40 1 8.8147 2.5885 1.7507 41 1 9.4944 3.3474 0.2911 42 1 10.1470 3.7603 1.8945 43 1 8.7815 5.1161 3.4880 44 1 7.1560 5.6703 3.0191 45 1 7.4493 3.9449 3.3437 46 1 9.0831 5.7685 -0.1649 47 1 8.1105 6.7356 0.9695 48 1 9.7353 6.1819 1.4390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593627685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:04 Heat of formation + Delta-G solvation = -93.851839 kcal Electronic energy + Delta-G solvation = -26855.325386 eV Core-core repulsion = 23264.353985 eV Total energy + Delta-G solvation = -3590.971401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.84544 -38.34266 -37.76887 -37.30834 -36.92270 -34.58610 -33.16093 -31.77902 -28.89709 -28.22372 -28.05131 -27.94500 -24.55755 -23.17721 -22.94440 -21.84705 -20.49967 -19.47071 -18.96583 -18.61440 -18.32769 -17.53969 -16.80564 -16.11813 -15.79869 -15.49319 -15.42313 -15.14653 -14.81667 -14.53649 -14.25752 -14.19349 -14.03799 -13.72563 -13.54018 -13.29296 -13.23818 -13.16022 -13.10818 -12.93821 -12.78343 -12.71352 -12.60009 -12.55639 -12.48675 -12.26789 -12.17345 -12.09430 -11.69977 -11.55885 -11.51343 -11.47566 -11.27345 -10.75646 -10.68027 -9.81037 -9.69326 -8.19986 -6.20988 -0.31826 1.37281 1.42766 1.47573 1.93092 2.38900 2.56654 3.02900 3.15001 3.39436 3.77426 3.92154 3.93464 4.01900 4.15654 4.24185 4.26608 4.32025 4.42957 4.49292 4.53144 4.69193 4.74956 4.80362 4.85245 4.95159 4.99810 5.00138 5.00833 5.03439 5.04694 5.11676 5.15997 5.19758 5.29994 5.37759 5.42886 5.43924 5.48305 5.51798 5.55023 5.59372 5.65116 5.79180 6.20433 6.40616 6.85846 7.41273 8.93253 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.005517 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.722480 B = 5074.107588 C = 6643.183435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.990 5.990 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.070 0.930 7 C 0.034 3.966 8 N -0.925 5.925 9 Si 0.905 3.095 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.249 1.249 13 S 2.802 3.198 14 O -1.002 7.002 15 O -1.013 7.013 16 N -1.085 6.085 17 C 0.089 3.911 18 H 0.115 0.885 19 C -0.165 4.165 20 C -0.141 4.141 21 H 0.126 0.874 22 C -0.082 4.082 23 C -0.063 4.063 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.141 4.141 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 0.130 10.627 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.831 5.831 4 C 0.093 3.907 5 C -0.565 4.565 6 H 0.088 0.912 7 C -0.166 4.166 8 N -0.565 5.565 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.173 1.173 13 S 2.810 3.190 14 O -0.986 6.986 15 O -0.997 6.997 16 N -0.843 5.843 17 C -0.020 4.020 18 H 0.133 0.867 19 C -0.204 4.204 20 C -0.161 4.161 21 H 0.143 0.857 22 C -0.120 4.120 23 C -0.063 4.063 24 C -0.193 4.193 25 C -0.198 4.198 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.415 0.736 10.923 11.468 hybrid contribution -0.034 0.125 -1.070 1.078 sum 3.381 0.861 9.853 10.453 Atomic orbital electron populations 1.22188 0.95403 1.03312 1.01656 1.21276 0.94887 0.81053 1.03360 1.57462 1.78967 1.23973 1.22652 1.19382 0.97333 0.91587 0.82442 1.21630 1.02129 1.27364 1.05385 0.91171 1.25389 0.96056 0.97542 0.97571 1.69981 1.23090 1.45021 1.18359 0.86347 0.81768 0.80570 0.78218 1.20133 1.21031 1.17296 1.01098 0.72864 0.72787 0.72255 1.93541 1.74936 1.73546 1.56572 1.93528 1.85704 1.33821 1.86607 1.55173 1.24496 1.63797 1.40795 1.21372 0.85391 1.00690 0.94510 0.86683 1.23321 1.00615 0.96468 1.00028 1.22999 0.98164 0.95426 0.99557 0.85651 1.21262 0.96681 0.95266 0.98763 1.20490 0.94213 0.95918 0.95724 1.21833 0.98317 0.97833 1.01356 1.21924 1.01595 1.01730 0.94574 1.21871 1.00887 0.96472 1.00633 0.93483 0.92642 0.89145 0.90179 0.89779 0.93919 0.95211 0.92744 0.74388 0.90081 0.87792 0.92548 0.93053 0.92350 0.93684 0.91778 0.91543 0.93133 0.92240 0.93318 0.92944 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 10.23 71.98 0.74 -3.92 16 2 C 0.12 3.83 6.10 86.38 0.53 4.36 16 3 N -0.99 -38.11 2.83 -519.84 -1.47 -39.58 16 4 C 0.22 9.67 4.51 85.63 0.39 10.05 16 5 C -0.53 -26.22 7.88 25.60 0.20 -26.02 16 6 H 0.07 3.72 7.39 -2.91 -0.02 3.70 16 7 C 0.03 1.81 5.47 84.65 0.46 2.27 16 8 N -0.92 -51.77 13.96 21.45 0.30 -51.47 16 9 Si 0.91 41.24 27.47 68.60 1.88 43.12 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 13 S 2.80 106.20 6.10 -56.49 -0.34 105.86 16 14 O -1.00 -38.16 16.95 -128.00 -2.17 -40.32 16 15 O -1.01 -45.16 16.47 -128.00 -2.11 -47.27 16 16 N -1.08 -35.30 6.10 -169.39 -1.03 -36.33 16 17 C 0.09 3.17 4.91 44.99 0.22 3.39 16 18 H 0.12 5.04 6.69 -2.38 -0.02 5.02 16 19 C -0.16 -5.40 10.02 30.60 0.31 -5.09 16 20 C -0.14 -4.08 4.18 -10.79 -0.05 -4.13 16 21 H 0.13 3.05 6.06 -2.38 -0.01 3.04 16 22 C -0.08 -2.36 4.55 30.59 0.14 -2.22 16 23 C -0.06 -1.42 0.80 -52.18 -0.04 -1.46 16 24 C -0.14 -2.85 8.23 71.98 0.59 -2.25 16 25 C -0.14 -2.77 8.23 71.98 0.59 -2.18 16 26 C -0.14 -2.94 8.47 71.98 0.61 -2.33 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 31 H 0.08 2.41 7.44 -2.39 -0.02 2.39 16 32 H 0.04 1.85 7.15 -2.38 -0.02 1.83 16 33 H 0.03 1.40 6.39 -2.39 -0.02 1.39 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.42 10.89 8.96 -96.74 -0.87 10.03 16 36 H 0.08 3.13 8.03 -2.39 -0.02 3.12 16 37 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.67 7.88 -2.39 -0.02 1.65 16 40 H 0.06 1.22 7.20 -2.39 -0.02 1.20 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.14 6.14 -2.39 -0.01 1.13 16 46 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -61.93 387.64 -0.25 -62.18 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.00 Total: 33.35 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.69 Total: -29.53 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -2.20 Total: -127.38 kcal Atomic # 8 Polarization: -83.32 SS G_CDS: -4.28 Total: -87.60 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.12 kcal Atomic # 16 Polarization: 106.20 SS G_CDS: -0.34 Total: 105.86 kcal Total: -61.93 -0.25 -62.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593627685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.669 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds